NO10G03320, NO10G03320 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G03320 vs. NCBI_GenBank
Match: EWM25547.1 (e3 ubiquitin-protein ligase ring1 [Nannochloropsis gaditana]) HSP 1 Score: 139.8 bits (351), Expect = 1.300e-29 Identity = 73/116 (62.93%), Postives = 82/116 (70.69%), Query Frame = 0 Query: 172 MSGLIAQLMRGETQRYEAPHASEEAIAALETVVW---------GGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREIKSRERGGGGAGGEESAR 279 M+ L+AQLMR E + A ASE AIA+LETVVW GGG E ERECVVCQE GDG+VLKRMPCGHVFHGEC+ETWLRRHANNCP+CRR ++ E G G GE R Sbjct: 1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAE--ERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALE--EEGEPGREGEGGGR 112
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_019441686.1 (PREDICTED: E3 ubiquitin-protein ligase RING1 [Lupinus angustifolius] >OIW12755.1 hypothetical protein TanjilG_24688 [Lupinus angustifolius]) HSP 1 Score: 89.7 bits (221), Expect = 1.500e-14 Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = 0 Query: 164 MGDYAVG-DMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQE-RECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI-------KSRERGG-GGAGGEES 277 +GDY +G + LI QL + RY P AS+ AI L TV+ E +C VCQ+ F G +K+MPC HV+HG+CL WL+ H N+CPVCR E+ ++R RG G AGG ES Sbjct: 148 IGDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAIDNLPTVIVDDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHGDCLIPWLQLH-NSCPVCRHELPTDDSDYENRPRGAQGNAGGNES 269
BLAST of NO10G03320 vs. NCBI_GenBank
Match: CCA20603.1 (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 87.4 bits (215), Expect = 7.500e-14 Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = 0 Query: 165 GDYAVGDMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI 262 GDY VG++S +I QLM+ ++ R+ P A++EAI L + + EC VC++ F +RMPC H FH +C+ WL++H N+CPVCR E+ Sbjct: 198 GDYVVGNLSTVINQLMQNDSNRHGTPPAAKEAIEKLPVLSITQEDINTNSECAVCKDDFNLAEEARRMPCTHTFHPDCILPWLKQH-NSCPVCRYEL 293
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_022572242.1 (E3 ubiquitin-protein ligase RING1-like [Brassica napus]) HSP 1 Score: 87.0 bits (214), Expect = 9.800e-14 Identity = 54/119 (45.38%), Postives = 66/119 (55.46%), Query Frame = 0 Query: 164 MGDYAVG-DMSGLIAQLMRGETQRYEAPHASEEAIAALETV-VWGGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREIKS----RERGGGGAGGEES 277 MGDY G + LI QL + RY P AS+ AI AL TV V + +C VC + F DG +K+MPC HVFH +CL WL H N+CPVCR E+ + E G G GGE S Sbjct: 150 MGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTLDMLNSEMNQCAVCMDEFEDGGDVKQMPCKHVFHQDCLMPWLELH-NSCPVCRYELPTDDPEYESRGQGQGGEAS 267
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_019187789.1 (PREDICTED: E3 ubiquitin-protein ligase RING1 [Ipomoea nil]) HSP 1 Score: 86.7 bits (213), Expect = 1.300e-13 Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 0 Query: 164 MGDYAVG-DMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQE-RECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI---------KSRERGGGGAGG 274 +GDY +G LI QL + RY P AS+ A+AAL T+ E +C VC++ F G +K+MPC HV+H +C+ WL H N+CPVCR E+ ++RE GGG A G Sbjct: 162 IGDYFIGAGFEDLIQQLAENDPNRYGTPPASKSAVAALPTIKANKDLLSSELAQCAVCKDDFELGMEVKQMPCKHVYHNDCILPWLELH-NSCPVCRYELPTDDPDYESRARENGGGSAAG 281
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_012570237.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum] >XP_012570238.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum] >XP_012570239.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum]) HSP 1 Score: 86.3 bits (212), Expect = 1.700e-13 Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 0 Query: 164 MGDYAVG-DMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQE-RECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI-------KSRERGGGGAG 273 +GDY +G + LI QL + RY P AS++A+ L TV E +C VCQ+ F G +K+MPC HV+H ECL WL+ H N+CPVCR E+ ++R RG GG G Sbjct: 139 IGDYFLGPGLEQLIQQLAENDPNRYGTPPASKDAVQKLPTVTVDDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHDECLLPWLQLH-NSCPVCRYELPTDDADYENRARGDGGDG 255
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_018464716.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Raphanus sativus]) HSP 1 Score: 86.3 bits (212), Expect = 1.700e-13 Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 0 Query: 165 GDYAVG-DMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGG----EEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI-------KSRERGGGGAG-GEESAR 279 GDY +G + LI QL + RY P AS+ A+ L TV ++ +C VC + F DG +K MPC HVFH +CL WLR H N+CPVCR E+ +SR RGGG +G G+++ R Sbjct: 67 GDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAVDGLPTVKVSKDRLLKDDEMMNQCAVCMDEFEDGCDVKEMPCKHVFHQDCLMPWLRLH-NSCPVCRFELPTDDPDYESRGRGGGTSGDGQQTPR 192
BLAST of NO10G03320 vs. NCBI_GenBank
Match: CCI42106.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 85.9 bits (211), Expect = 2.200e-13 Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 0 Query: 165 GDYAVGDMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI 262 GDY VG++S +I QLM+ ++ R+ P A++EAI L + + EC VC++ F +RMPC H FH +C+ WL++H N+CP+CR E+ Sbjct: 141 GDYVVGNLSTVINQLMQNDSNRHGTPPAAKEAIEKLPMLAITQEDININPECAVCKDEFNLAEEARRMPCTHTFHPDCILPWLKQH-NSCPICRYEL 236
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_017224236.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Daucus carota subsp. sativus] >KZM82796.1 hypothetical protein DCAR_030365 [Daucus carota subsp. sativus]) HSP 1 Score: 85.9 bits (211), Expect = 2.200e-13 Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 0 Query: 164 MGDYAVGD-MSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQE-RECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI-------KSRERGGGGAGGEESA 278 +GDY +G + LI QL + RY P AS A+ L VV G + +C VCQ+ F V+K+MPC HV+H ECL WL H N+CPVCR E+ ++R RG +GGE + Sbjct: 146 LGDYFLGQGLEQLIQQLAENDPNRYGTPPASRTAVEGLPDVVVDDKLLGSDLAQCAVCQDDFEKDMVVKQMPCKHVYHSECLLPWLELH-NSCPVCRYELPTDDPDYENRVRGTAASGGENDS 267
BLAST of NO10G03320 vs. NCBI_GenBank
Match: GAV72272.1 (zf-RING_2 domain-containing protein/zf-RING_3 domain-containing protein, partial [Cephalotus follicularis]) HSP 1 Score: 85.9 bits (211), Expect = 2.200e-13 Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 0 Query: 164 MGDYAVGD-MSGLIAQLMRGETQRYEAPHASEEAIAALETV-VWGGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREIKSRE--------RGGGGAGG 274 +GDY +G + LI QL + RY P AS+ AI +L+TV V E + +C VC++ F G +K+MPC H++H EC+ WL H N+CPVCR E+ + + RGG +GG Sbjct: 173 LGDYFIGPRLDDLIQQLAENDPNRYGTPPASKSAIESLKTVKVTEQVMESEMNQCAVCKDAFERGNEVKQMPCKHIYHEECILPWLEMH-NSCPVCRYELPTDDPDYENRVARGGHESGG 291 The following BLAST results are available for this feature:
BLAST of NO10G03320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G03320 ID=NO10G03320|Name=NO10G03320|organism=Nannochloropsis oceanica|type=gene|length=837bpback to top protein sequence of NO10G03320.1 >NO10G03320.1-protein ID=NO10G03320.1-protein|Name=NO10G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bpback to top Synonyms
Publications
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