NO10G03300, NO10G03300 (gene) Nannochloropsis oceanica

Overview
NameNO10G03300
Unique NameNO10G03300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3153
Alignment locationchr10:926461..929613 -

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Properties
Property NameValue
DescriptionCullin repeat-like-containing domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:926461..929613 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006887exocytosis
GO:0006887exocytosis
Vocabulary: Cellular Component
TermDefinition
GO:0000145exocyst
GO:0000145exocyst
Vocabulary: INTERPRO
TermDefinition
IPR016159Cullin_repeat-like_dom
IPR033961Exo84
IPR032403Exo84_C
Homology
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BLAST of NO10G03300 vs. NCBI_GenBank
Match: EWM25549.1 (Cullin repeat-like-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 267.7 bits (683), Expect = 1.500e-67
Identity = 186/474 (39.24%), Postives = 254/474 (53.59%), Query Frame = 0 
Query:   38 PRRPGGHAPGTA-ALSDQWMDFAERVFVAEDYVEGFFLTHSEAEAEERCAELMNLRYQTQDLLRHEVSSHYQLFMRGTEDIQHVEADIIKLRLLVKNMQESLKALDHASSTILIGDAAAGXXXXXXXXXXQGDERGNVRMSMRGEAGGVGGKSAANWISIARXXXXXXXXXXXXXXXSSRPCFAGTGRTSVRLSPSFSSLPSTSYVNPTSFLQSSFSINSADLSMDACMHFPEWVLLALEDLERCMIGKERSAAVGHIQKLRTYLSSFPPSSSSSPAQAAAHKDLSFLVTRQADAVACRVMQELESMAPSTAPSILSDFSDVTRQLKLLVLLGKSEMAVDFFIRNRGDVLARSLRQLDAGGETLSSITLLAETFFGLITEACGAFEAL---CATXXXXXXXXXXXXXXXXXXEGKQGTERKGGKEGGKAVTMTWPS----DCVARLVLWVEGEVKYFAELVGRRLRMMKMDLWM 504
            PR+    +P +A  ++D   +FAE+ FV E+Y E FF  H EAEAEERCAEL +LR QTQ+LLR EV+SHYQLFMR TEDIQHVEADI +LR  V  MQ+SLKALD A +T L G AA              D    ++    G   G+G ++      +A           XXXXX            S           S    N +S L+          +       P WV  A+EDL++C++  +RS AV HI KLR  L+S  PS +SSP      +DL   VT +   +A R+++EL+++AP    SIL DF+D+ +QL+ LV L ++E AVDFF+RN+G VLAR+L   +  GE L  + +LAE FFGL+ +AC +F+AL     +                    +  T      + G  ++  WPS    +C  RLVLWVE EV+ FA L+GR+LR ++ D W+
Sbjct:   38 PRKHKSRSPSSATGITDSLAEFAEQTFVPEEYAEAFFAAHPEAEAEERCAELTDLRCQTQELLRAEVASHYQLFMRSTEDIQHVEADIARLRRHVGRMQKSLKALDGAMTTTLSGAAADNVSIAFAASSKVRDGSIAIKEMEDGGQDGIGARAR----DVASLPESLRSWGAXXXXXXXXXXXXXXXXXSDGFKGGLHHQGSDPAANLSSDLEGKGPSGQPAPNSLERDDLPAWVAAAMEDLDKCIVENQRSVAVNHIVKLRALLASLSPSRASSPHS----QDLQRRVTSKGKEIAGRIVRELDALAPGANLSILFDFADMAQQLRFLVALDEAETAVDFFVRNKGGVLARALHSPETSGEPLVYVAVLAERFFGLMADACESFDALFTVSVSEGRSEAITAGGTPITPPPNFEAFTSTDVENQRGGPMSTPWPSVRPPECFLRLVLWVEEEVRQFAVLLGRQLRSLRQD-WL 502
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BLAST of NO10G03300 vs. NCBI_GenBank
Match: CBJ28418.1 (exocyst complex component, putative [Ectocarpus siliculosus])

HSP 1 Score: 68.6 bits (166), Expect = 1.400e-7
Identity = 60/247 (24.29%), Postives = 111/247 (44.94%), Query Frame = 0 
Query:  265 MHFPEWVLLALEDLERCMIGKERSAAVGHIQKLRTYLSSFPPSSSSSPAQAAAHKDLSFLVTRQADAVACRVMQELESMAPSTAPSILSD-----------FSDVTRQLKLLVLLGKSEMAVDFFIRNRGDVLARSLRQLDAGGETLSSITLLAETFFGLITEACGAF-EALCATXXXXXXXXXXXXXXXXXXEGKQGTERKGGKEGGKAVTMTWPSDCVARLVLWVEGEVKYFAELVGRRLRMMKM 500
            +  PEW+  A  +LE  ++ ++   A   I+++R + ++   +++               + R  +    R+ Q++E+MA   A  +L++           F +      LL+ LG+SE A  FF+  R  ++ RSLR ++   + LS + +L+ETFFG + +A  AF +  C +                  +  QG +  G          T P     RLV+WV  ++  +A L+GR++R + M
Sbjct:  155 LKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATN---------------LGRGVE----RIFQKVETMAAGMAERLLAEISAANTLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQVLDAVSAFLKLFCKSARIHERRSIKTGKSTAYYQVYQGVKDCG----------TAP---FCRLVVWVNQQIDQYAVLMGRQIRAITM 369
The following BLAST results are available for this feature:
BLAST of NO10G03300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25549.11.500e-6739.24Cullin repeat-like-containing domain protein [Nann... [more]
CBJ28418.11.400e-724.29exocyst complex component, putative [Ectocarpus si... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR013ngnoR013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03300.1NO10G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585667gene_3866Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100130g12gene4954Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03300.1NO10G03300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03300 ID=NO10G03300|Name=NO10G03300|organism=Nannochloropsis oceanica|type=gene|length=3153bp
ATGATGATGTCGCCCTCCAAAAAAGTAGCAATTCAAGAGGGGGGATCAAC
CACCGCAGCAGGTGCAGCGGCCGGCATCAGGTCTTTCCTCTCTTCCCAGC
CGAAGCAGTCGCCACGACGCCCAGGCGGCCATGCACCAGGTACCGCAGCG
TTGAGTGACCAGTGGATGGACTTTGCTGAGCGTGTTTTTGTCGCAGAAGA
TTACGTGGAGGGATTTTTCCTGACGCATTCCGAGGCGGAGGCCGAGGAGC
GGTGCGCAGAGCTAATGAATTTGCGGTACCAAACGCAGGACTTGCTTCGG
CACGAGGTCTCATCGCATTACCAGCTTTTTATGCGTGGCACGGAGGACAT
CCAGCACGTGGAGGCAGATATTATCAAGCTCCGGTTATTGGTCAAAAATA
TGCAAGAGTCTTTGAAAGCACTCGACCATGCGTCAAGCACCATCTTGATC
GGTGACGCCGCCGCAGGAGGAGCAGCAGGTGCGACGGCAGCTGGAGGGCA
AGGAGATGAAAGAGGGAATGTGAGGATGTCGATGCGTGGAGAAGCGGGAG
GTGTTGGTGGAAAAAGCGCGGCAAATTGGATATCTATTGCTCGAGGAGAA
GGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGAAAGAAGCAGCCGACC
CTGCTTTGCTGGCACCGGGCGTACGAGCGTCCGCCTAAGCCCCTCCTTCT
CCTCCCTTCCTAGCACATCCTATGTAAATCCAACCTCCTTCCTCCAGTCC
TCTTTTTCTATCAATTCTGCGGACCTTAGCATGGACGCCTGCATGCATTT
TCCCGAATGGGTGCTCCTCGCCTTGGAAGACCTTGAACGCTGCATGATCG
GGAAAGAACGCTCAGCTGCCGTCGGACACATTCAAAAACTCCGGACCTAC
CTCTCCTCCTTCCCTCCCTCCTCCTCGTCCTCCCCAGCACAAGCAGCAGC
GCACAAGGATCTCTCTTTCTTGGTGACGCGACAGGCGGATGCGGTCGCGT
GTCGGGTGATGCAAGAATTGGAGTCCATGGCACCATCAACCGCCCCTTCG
ATCTTGTCTGATTTCTCCGATGTGACTCGACAGTTGAAGCTGTTGGTCTT
GCTGGGGAAGAGTGAGATGGCGGTGGATTTCTTCATCAGGAACAGGGGGG
ACGTGCTGGCACGGAGTTTGCGTCAGTTGGACGCTGGAGGGGAAACGTTA
TCGTCCATCACCCTCCTCGCGGAGACTTTTTTCGGGTTGATTACTGAGGC
GTGTGGGGCGTTTGAGGCGCTTTGTGCTACTGCTGCTGCAGGGAGAACTA
CTCCTGCTGCTGCTGCTGGTGGTGGTGGTGCAGTTGAGGGGAAGCAGGGT
ACGGAGAGGAAGGGAGGAAAGGAGGGAGGGAAGGCGGTGACGATGACATG
GCCATCGGATTGTGTCGCGAGACTTGTTTTGTGGGTCGAGGGGGAGGTGA
AATACTTTGCAGAGCTGGTGGGGAGGCGTCTGAGGATGATGAAAATGGAC
CTGTGGATGGGACAGAGCTGTGGTAGTGTGGGTAGTAGTAGTAGCAGTAG
TAGTAGCAGTAGTAGCAGTAATAGTAGTAATAGTAGTAGTATTGGCGATG
GAGGGAGCAAGACATTATTGCAGTGTGTGGATCCCCTGCGTCATCCTCTT
GGGCCCTCGGACACGAGAGGGAGCAGCAGCAGCAGCAGCACAAGCAACGG
TGGCACCTCCACCTCCTTCCTCACCCCTCTCTCTGTGCTCACGTCGGCGA
TCGCCTTTCCTTCCTCAGCAGCAGCAACAGTAGTACCAACAGCAGCAGCA
ACAGCATCAGCAACAGCAGGAGGAGGAGGAGGGGGAGAAGGAGAAGGAGA
AGGAGGAGAAGTTAGAGGAGGAGAAGAAGGGGCTCTTCCCGACGCTTATC
TTTCTTCTGCTCGCTGTTGCTTGTTAAGACAAATGAATTTTATGCCCCAG
TCACCTTCACGGCAAACCCACCAGCACCAGCACCAGCACCAGCACCAGCA
CCAGCAACAGCAGCAGCAGCAATCGCAACAACAGGAACTCCACCCTCAAC
AACCAGACCAACAACACGGCCCCTCGTCCTTTTCTTTCCCCCTTACCTGC
GATCCATCCTTCATCACCATTGGCGCTTGTCTAGAGGTTTGCTTTGCCCT
TGCCGAAAGGCTTGACGCGCTCGGCCTCCCCCTCCGTCCCTCCCTCGCCT
CTGTTCTCACCCACGACGTCCTTTCCCTTCTCCGCAGAGTCGCCCATACA
GCTTTGCTTCGAATCGACGACGCAGTGGAGAAGGAAGGAGGAAGGGAGGG
AGGGATATTGGTACCAGCGGAGGCCCTTGTGCTCGTGACCCCCATGTCAG
TGACTGCTCGAGTAGACAACTTGCTCTCGGGAGGAGCAGGGCAAGAAGGA
GAGGAAAAAATGGCACCAGATGCAGCAGCAAGGGACGCCCCTTCCCCCTT
CACTTACTCCTCGTCCTCTACACCAGCCCGCCTCTTCCCTGTTCTCCCTT
CCACCCTCCTCCTCCTGGCCGAAATCAATTCCTTAATAATCAGCTGGGTG
ATGATGAAAGAAAGCAAAGGCGCGATCGCTCAATATTCTGATCTAATGGG
TCCTGCGGTGGATAAAATGGTGGTGAGAGAGATTTGCGGGTTGCTAAGAG
ACTATGCGGATACGGTGAAGAGGAGGCTCTTGACGGAGGGGGAGGGAGGA
GTAAGAGGAGAAGGAGGAGAAGGAAAGGCAGAAGGTGGAAGTGGATTAAG
GACCACTACGTTGAGCAGCAGTAGCAGCGGCATTGGTAGTGAAGAAAATT
TGACACCTGCAGAGATGAGAAAGAGGGCAGTGACAGCAGAGGCGCTTCAG
GCTATTCGAGGCGTGACGCTCTGGGAGTTGAGCCATACATGGATTAATGA
TCCATTGGTTTTGGTCGACCCCTCCTCGGCTGTTATCAAAGACATCATCC
TCGTGCATGAACTATACGCTTGCGTGATAAAAGCCTTGAAAGAAGCGAGT
GGTGAAGCTGCCATGGCGAGGAGTACTGCTGCTGCTGTCTCTGATGCGGC
TGCTACTTCAGAGGCTCCTGGATCGCCCTCCGCGCCGTCGGGTCCAGAGA
GAGGAAAGATATCGCCGGCCTCGGCTTTCTCACGCTTGACCATGGGAAGA
TGA
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protein sequence of NO10G03300.1

>NO10G03300.1-protein ID=NO10G03300.1-protein|Name=NO10G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1051bp
MMMSPSKKVAIQEGGSTTAAGAAAGIRSFLSSQPKQSPRRPGGHAPGTAA
LSDQWMDFAERVFVAEDYVEGFFLTHSEAEAEERCAELMNLRYQTQDLLR
HEVSSHYQLFMRGTEDIQHVEADIIKLRLLVKNMQESLKALDHASSTILI
GDAAAGGAAGATAAGGQGDERGNVRMSMRGEAGGVGGKSAANWISIARGE
GGGGGGGGEGEERSSRPCFAGTGRTSVRLSPSFSSLPSTSYVNPTSFLQS
SFSINSADLSMDACMHFPEWVLLALEDLERCMIGKERSAAVGHIQKLRTY
LSSFPPSSSSSPAQAAAHKDLSFLVTRQADAVACRVMQELESMAPSTAPS
ILSDFSDVTRQLKLLVLLGKSEMAVDFFIRNRGDVLARSLRQLDAGGETL
SSITLLAETFFGLITEACGAFEALCATAAAGRTTPAAAAGGGGAVEGKQG
TERKGGKEGGKAVTMTWPSDCVARLVLWVEGEVKYFAELVGRRLRMMKMD
LWMGQSCGSVGSSSSSSSSSSSSNSSNSSSIGDGGSKTLLQCVDPLRHPL
GPSDTRGSSSSSSTSNGGTSTSFLTPLSVLTSAIAFPSSAAATVVPTAAA
TASATAGGGGGGEGEGEGGEVRGGEEGALPDAYLSSARCCLLRQMNFMPQ
SPSRQTHQHQHQHQHQHQQQQQQQSQQQELHPQQPDQQHGPSSFSFPLTC
DPSFITIGACLEVCFALAERLDALGLPLRPSLASVLTHDVLSLLRRVAHT
ALLRIDDAVEKEGGREGGILVPAEALVLVTPMSVTARVDNLLSGGAGQEG
EEKMAPDAAARDAPSPFTYSSSSTPARLFPVLPSTLLLLAEINSLIISWV
MMKESKGAIAQYSDLMGPAVDKMVVREICGLLRDYADTVKRRLLTEGEGG
VRGEGGEGKAEGGSGLRTTTLSSSSSGIGSEENLTPAEMRKRAVTAEALQ
AIRGVTLWELSHTWINDPLVLVDPSSAVIKDIILVHELYACVIKALKEAS
GEAAMARSTAAAVSDAAATSEAPGSPSAPSGPERGKISPASAFSRLTMGR
*
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Synonyms
Publications