NO10G03280, NO10G03280 (gene) Nannochloropsis oceanica

Overview
NameNO10G03280
Unique NameNO10G03280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2280
Alignment locationchr10:916495..918774 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:916495..918774 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G03280 vs. NCBI_GenBank
Match: EWM25552.1 (hypothetical protein Naga_100130g4 [Nannochloropsis gaditana])

HSP 1 Score: 69.7 bits (169), Expect = 4.400e-8
Identity = 227/744 (30.51%), Postives = 306/744 (41.13%), Query Frame = 0 
Query:   32 LRRWLSLVKERMERWEIEDQGLALQQEKCLR---RCLDVWAKMTMISMRQRGREKVGVAAW-KGQQKRGWVAFQKMMHRKEWNRRNDVQARWLWLQQRQALTLVRWVYWTRGQKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRALTEAEERRLKLLQSAYPTWHISGGNSNGRSCTALFEGRRDRGEIGEGGRRHFPTPRPWNGDGAGWNAYGTGGRGHLALSGGNKNRSSSSHSYRAFLSVSAASVSPPASTR-ERTLLSS--SSLPTATPSSFDSSSSFSRSLPILPPSQRGSLRPPPRRPLEVVLEAQGVQVPAWILREMHSHVVNE-KQEVKEVESVAMARESGRMTSTAEVVESTAAPAAAALAGGRQAMVASLATETVEEKEGKWLNGAGRVTRGREGGASLISSSSRSPGTGMLPSFFTPSFSSSFSPPTSPHGLSAHASPLASSSSFNRSSFPGLTDITTYATSTAAPATGTD-VCGSYYNAGTRRAPPRRGRDEDREGSGERGGRMKEMEMR-------KEEGDEGKHKHEKEVDLGNDDGIDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGILEARLRGWMMERERFEQA------RVEVEELEAIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQELREVLREYEEWQERTLPLIRGVHRKIGQLKLRVSGARLTT 754
            LR W  LV+ + E     D+G      KC R   RCL  WA+ TM  M QR + + G  A+ K  + +GW A+       +     + +A  LW  ++ +  L +W         XXXXXXXXXXXXXXXXXXXXXX                  +R   +AE R+ KL+++A   W   G ++  + CT         G  G  GRR  P PRPW G+      +G    G  +  G   NR  +         +   S   P   R ER   SS  SSLP     S  SS+ F+R  P          R  PRRPLE++LE+ GV+VP WI  E+ +   +   +E+ +       +E     S    V S          GGR        T +VE++            RG   G S+      +P     P   T         PT+P  +        SS+     SFPG+  +   A   + P  G   +  S   +G   A P  G + D     ERG R++ +EM        + EG E + +   +V  G   G DG                                  L ILEARLRGWMMERERFE A                 XXXXXXXXXXXXXXXXXXX                                     XXXXXX +EL +V+REYE WQ++T+PLI+ V+ ++ + KL++S  + TT
Sbjct:  524 LRVWEGLVRRKKEE---RDRGRRTLAWKCSRGQDRCLQRWARRTMADMWQRAKVECGQQAYGKRGEAKGWEAWSMGTQSLKAFHEQEERAGRLWAHRQVSWALRKWTCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAWRAWKIWAARHRLERARRVQQQAEARQAKLVEAATSWWR--GASTGAKVCT---WRTCAVGIKGPKGRRLLPPPRPWTGEDIQIRHHGIRSAGGTSWGGSVDNRVRNPR-------LDTVSWQGPIHDRIERDGRSSFASSLPIPPFLSSSSSAHFTRIGP----------RCQPRRPLELMLESYGVRVPPWIAEELRTREASAVDEEISQTSHRGTRKERNDQLSACSFVPS----------GGR--------TRSVEDR------------RGDPPGKSI-----TTPAPPFCPRTDT-------LVPTAPRDV--------SSTVGCSPSFPGVDAVGIEALGKSGPDLGAGALVASAPKSGI--ALPMEGMENDGR-KRERGERVEGLEMDAVSTLVWENEGGEDRERDTLDVQAGG--GGDG---------------DTEEDVGACENAEDIEGDELDILEARLRGWMMERERFEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSHPMVHLDRHTSNRLEGSEDHNTEGHNPSDRTQRRNXXXXXXMEELHDVMREYEMWQKKTMPLIQAVYERVRRKKLQLSEGKETT 1172
The following BLAST results are available for this feature:
BLAST of NO10G03280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25552.14.400e-830.51hypothetical protein Naga_100130g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03280.1NO10G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585676gene_3869Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03280.1NO10G03280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03280 ID=NO10G03280|Name=NO10G03280|organism=Nannochloropsis oceanica|type=gene|length=2280bp
ATGTGGAAAGTTAGGGAGGAGCAGAGGAGGGAGGAGGAGGAGGAGAGTGC
TGCTTTTATAGCTGCACGCTGTCAGCAGACACGACGCAGGGCGTTACGGC
GATGGCTCTCTCTGGTGAAGGAGAGAATGGAACGATGGGAGATTGAAGAT
CAGGGCCTGGCGCTGCAGCAGGAAAAATGTCTCCGCCGGTGCTTGGACGT
GTGGGCGAAGATGACGATGATCAGCATGCGTCAGCGAGGGAGGGAGAAAG
TGGGGGTCGCAGCGTGGAAAGGGCAGCAAAAGAGGGGATGGGTGGCTTTT
CAAAAGATGATGCACCGAAAGGAATGGAATCGAAGGAATGATGTGCAGGC
CCGCTGGCTGTGGTTGCAGCAACGACAAGCTCTGACTTTGGTCCGATGGG
TGTATTGGACTCGCGGACAAAAATCGCGGAAGAGGAGAGAGAGGGAGGGA
GGGAAGGAGGGATTGTGGCAATGGAAGGGATGGAGGGAAGGGTGGGCATT
TAAAAGGTGGCGAATTTGGGTGCATCGGCATCGGAAGAAGAGGCAACAGC
GAGCACTGACAGAAGCAGAGGAACGTCGGTTGAAGCTCTTGCAGTCTGCT
TATCCTACATGGCATATCAGTGGTGGGAACAGCAACGGCCGGAGCTGCAC
CGCTTTATTCGAAGGGAGAAGAGACAGGGGGGAGATAGGGGAGGGAGGAA
GGCGTCATTTCCCTACACCTCGCCCTTGGAATGGTGATGGTGCGGGGTGG
AATGCGTATGGGACGGGAGGGAGGGGCCATCTTGCACTTTCTGGTGGGAA
TAAAAACAGAAGTAGCAGTAGTCACAGCTATAGAGCCTTTTTATCTGTTT
CTGCTGCCTCAGTCTCACCACCGGCCTCGACTAGGGAACGGACCTTATTA
TCCTCATCCTCCCTACCGACAGCAACTCCCTCCTCCTTCGATTCCTCGTC
CTCCTTCTCTCGGTCATTGCCCATACTCCCTCCCTCCCAACGAGGGTCCC
TACGCCCTCCTCCTCGCCGGCCGTTGGAGGTGGTGTTGGAGGCTCAAGGA
GTGCAAGTCCCTGCTTGGATTCTGCGAGAGATGCATTCCCATGTGGTCAA
CGAAAAACAGGAGGTCAAAGAGGTGGAGAGCGTGGCGATGGCGAGAGAAA
GCGGCAGAATGACGTCAACAGCTGAAGTAGTGGAGTCAACAGCTGCTCCT
GCTGCTGCTGCGCTTGCTGGTGGGAGGCAAGCGATGGTGGCTTCTTTAGC
CACAGAGACAGTAGAGGAAAAGGAGGGAAAGTGGTTGAATGGCGCAGGGA
GGGTAACACGTGGGAGGGAGGGAGGAGCGTCTCTAATTAGCAGTAGCAGC
CGCTCACCGGGAACAGGCATGTTGCCTTCCTTCTTTACGCCTTCATTCTC
TTCCTCTTTCTCGCCACCCACAAGCCCCCACGGGTTATCGGCCCATGCGT
CACCTTTGGCCTCTTCTTCCTCTTTCAATCGATCGTCCTTCCCAGGGCTT
ACGGATATCACTACTTATGCTACATCTACTGCTGCTCCTGCTACTGGTAC
CGATGTGTGTGGGAGTTATTACAACGCAGGCACACGCCGAGCGCCCCCTA
GAAGAGGAAGAGATGAAGACCGAGAAGGCTCTGGAGAAAGAGGAGGGAGA
ATGAAAGAAATGGAAATGAGAAAAGAGGAGGGAGATGAAGGCAAGCACAA
ACACGAGAAGGAAGTCGACCTCGGCAATGACGACGGTATAGACGGGCAGC
AGCAAAAAGAGGACAAGGACGTGGAAGAGAGGGAAGAGGAGGAGCAGAAT
GTTTTAAAGGAGGAGGGGGTTGTAGAAGAGAAGGAGGAGGAGGAAGATTT
GGGGATTTTGGAGGCGCGATTGCGGGGGTGGATGATGGAGCGTGAACGAT
TTGAGCAAGCGCGTGTGGAAGTAGAGGAACTTGAAGCCATTCAACAACAA
CGACGACACCACCCAGGGCAGCAGAAGAAGGAGCAGGCGTCGACCGAATC
CTCTTCTCTTTCGTTATCCACCTCACAGGCGTCTTCTGCATTGTCGCAAG
CAACGCCGTCCAGCCCAAACAGGAGCAGCAGCAGCAGCACGAGTGTAGGG
AGTTTGAGGAGGCGTCAGCAGGAGGAGCGGCTGCAGGAATTGCGAGAAGT
CTTGCGAGAGTATGAAGAGTGGCAAGAACGGACATTACCTTTAATTAGGG
GGGTGCACAGGAAAATCGGACAGCTGAAGCTGCGTGTGTCAGGAGCGAGG
CTGACGACAACAACGACTGCTTCTATCTGA
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protein sequence of NO10G03280.1

>NO10G03280.1-protein ID=NO10G03280.1-protein|Name=NO10G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=760bp
MWKVREEQRREEEEESAAFIAARCQQTRRRALRRWLSLVKERMERWEIED
QGLALQQEKCLRRCLDVWAKMTMISMRQRGREKVGVAAWKGQQKRGWVAF
QKMMHRKEWNRRNDVQARWLWLQQRQALTLVRWVYWTRGQKSRKRREREG
GKEGLWQWKGWREGWAFKRWRIWVHRHRKKRQQRALTEAEERRLKLLQSA
YPTWHISGGNSNGRSCTALFEGRRDRGEIGEGGRRHFPTPRPWNGDGAGW
NAYGTGGRGHLALSGGNKNRSSSSHSYRAFLSVSAASVSPPASTRERTLL
SSSSLPTATPSSFDSSSSFSRSLPILPPSQRGSLRPPPRRPLEVVLEAQG
VQVPAWILREMHSHVVNEKQEVKEVESVAMARESGRMTSTAEVVESTAAP
AAAALAGGRQAMVASLATETVEEKEGKWLNGAGRVTRGREGGASLISSSS
RSPGTGMLPSFFTPSFSSSFSPPTSPHGLSAHASPLASSSSFNRSSFPGL
TDITTYATSTAAPATGTDVCGSYYNAGTRRAPPRRGRDEDREGSGERGGR
MKEMEMRKEEGDEGKHKHEKEVDLGNDDGIDGQQQKEDKDVEEREEEEQN
VLKEEGVVEEKEEEEDLGILEARLRGWMMERERFEQARVEVEELEAIQQQ
RRHHPGQQKKEQASTESSSLSLSTSQASSALSQATPSSPNRSSSSSTSVG
SLRRRQQEERLQELREVLREYEEWQERTLPLIRGVHRKIGQLKLRVSGAR
LTTTTTASI*
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Synonyms
Publications