NO10G03270, NO10G03270 (gene) Nannochloropsis oceanica

Overview
NameNO10G03270
Unique NameNO10G03270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1317
Alignment locationchr10:915080..916396 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:915080..916396 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G03270 vs. NCBI_GenBank
Match: EWM25552.1 (hypothetical protein Naga_100130g4 [Nannochloropsis gaditana])

HSP 1 Score: 115.5 bits (288), Expect = 4.000e-22
Identity = 134/440 (30.45%), Postives = 180/440 (40.91%), Query Frame = 0 
Query:   11 PPFSP-PRRSVSGSSSLSSSP-----STQPFPVSSSLLPLLPSPLVISLPPSNSSRDHTVEIDNNNNDQHALHEVEDGFVRQLDALERF-RPSLCSRPSSPDFTRRAIPLPVGEADAYHRSRHAARARQALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEIALFLA-----------------------------CGRRGLHSLRLHAAQASTRRHRLLCLDGYAQSTAARRCLRRWRLVFVQQSRLNVYAAWHQVKGKQLVIRWWRTVEVQGPGVQREGQAVAATRHALRLMFLC---WKRWXXXHFQRRXXXXQQMMKKGLSVDVDKWREGRGRLRALALLLVGVRHQRRMQRGEDWRKVRLALKGWTSFLHVCTKRSAVKESLARVVEVGEMARLVGKSEKALQQWRERTRRRVGGVVRLEVGETRWRERRLSQA 412
            PPF+P      S SSS SSSP     ST   P +SSLLP + S   +S P    S+ +  E   + +DQ  LHEVEDGF RQ+DALER  +PS+      P F R   P  V +A A   + HA  +RQ                               G  A   A                               RR LHSLRL   +A TRR R +CLDG+AQSTA RR LR WR   +Q        AW   + ++  +RWW      G   QRE +A+A TRHAL +MF C       XXX     XXXX    ++G + D++ WR                                                   + +   + EVG MA  VG++ +A++QW+      V    R+E G+T W++++L  +
Sbjct:    6 PPFAPIADFHFSLSSSASSSPNSSYSSTLSLPAASSLLPHVASSGFLSSP----SKFYDSE---SADDQDVLHEVEDGFARQMDALERIHKPSIV-----PGFRRTEAPFTVADA-AVDGTGHATGSRQPSHTPPANEAGETAATRKPATEWGNRKVLEGGHGAQGTAGTNVQVPPISDDSDDSAPGDHASRSSPFQGKRRTLHSLRLRTGRALTRRRRFMCLDGFAQSTAMRRTLRCWRGRGLQAWYEKTAIAWADARRQRRALRWWWETIKHGEKEQREAEALAGTRHALSVMFRCXXXXXXXXXXXXXXXXXXXXXAKEEGRTADMEAWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAWRQWRATEVYLGEVGMMACCVGRATRAVRQWQIWAEEHVRARERVEAGDTGWQKQQLESS 432
The following BLAST results are available for this feature:
BLAST of NO10G03270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25552.14.000e-2230.45hypothetical protein Naga_100130g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001202NSK001202Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03270.1NO10G03270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100130g4gene4959Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03270.1NO10G03270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03270 ID=NO10G03270|Name=NO10G03270|organism=Nannochloropsis oceanica|type=gene|length=1317bp
ATGCACGACATTGAAATCCCGTCCTCCCCGCCGCCCTTCTCTCCCCCCCG
GAGAAGCGTCTCTGGCTCCTCTAGCCTCTCCTCCTCCCCCTCCACGCAGC
CTTTCCCGGTCTCCTCCTCCCTTCTGCCCCTATTACCGTCACCATTAGTG
ATTTCGTTACCACCATCCAACAGCTCGCGCGACCACACCGTTGAAATTGA
CAACAATAACAATGATCAACATGCCTTGCACGAGGTAGAGGATGGCTTCG
TCCGGCAACTGGACGCCCTTGAACGTTTCCGGCCTTCGTTGTGTTCTCGT
CCTTCCTCTCCCGATTTTACACGCAGGGCGATCCCTCTTCCGGTGGGTGA
AGCTGATGCGTATCATAGGAGTCGCCACGCCGCTCGTGCTCGGCAGGCTC
TTCGAACGGCGTTAGCTAAGGGGGGGGAACACGGGCAAGAGCACCAGCAG
CATGTTTCACAAGCCGACGAAGAGAAGCACGAGCAACACGGAGAGATTGC
ATTGTTTCTGGCTTGTGGTCGCCGTGGCCTTCACTCCCTTCGTTTGCACG
CAGCGCAAGCCTCCACTCGCCGTCACCGCCTCCTATGCTTGGATGGGTAT
GCTCAATCCACTGCTGCCCGCCGTTGCCTCCGTCGCTGGCGCCTTGTCTT
CGTACAGCAATCAAGGCTGAATGTATATGCTGCTTGGCATCAGGTAAAAG
GGAAACAACTGGTGATCAGATGGTGGAGGACGGTCGAAGTACAGGGACCA
GGGGTTCAGAGAGAGGGGCAGGCAGTGGCAGCGACGAGACATGCGCTCCG
ATTGATGTTTCTATGTTGGAAACGTTGGAAAGCGTGGCATTTCCAACGAC
GACAGCAATGGCAGCAGCAGATGATGAAAAAGGGGTTGAGTGTGGATGTG
GACAAATGGAGGGAGGGTAGAGGAAGGCTCAGGGCATTGGCCTTGCTGCT
GGTAGGAGTGAGGCACCAACGACGGATGCAGCGTGGGGAGGACTGGAGGA
AGGTGAGGCTGGCATTGAAGGGATGGACATCTTTTTTGCACGTTTGTACC
AAAAGAAGTGCCGTGAAGGAGAGCTTGGCCCGTGTGGTGGAGGTGGGAGA
GATGGCCCGCTTGGTGGGGAAAAGTGAGAAGGCGCTGCAGCAGTGGAGGG
AACGGACGAGGAGGAGGGTAGGGGGAGTGGTAAGGTTGGAAGTAGGAGAG
ACGCGGTGGAGAGAAAGGAGGCTGAGTCAAGCGTGGGAGGGATGGAAGGG
ATGGGCACGGTGGCAGGGGCGGCAGGAGAGGGGGTGGGGGAGGGAAGGGT
GTGGTGGTACGCGTTGA
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protein sequence of NO10G03270.1

>NO10G03270.1-protein ID=NO10G03270.1-protein|Name=NO10G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MHDIEIPSSPPPFSPPRRSVSGSSSLSSSPSTQPFPVSSSLLPLLPSPLV
ISLPPSNSSRDHTVEIDNNNNDQHALHEVEDGFVRQLDALERFRPSLCSR
PSSPDFTRRAIPLPVGEADAYHRSRHAARARQALRTALAKGGEHGQEHQQ
HVSQADEEKHEQHGEIALFLACGRRGLHSLRLHAAQASTRRHRLLCLDGY
AQSTAARRCLRRWRLVFVQQSRLNVYAAWHQVKGKQLVIRWWRTVEVQGP
GVQREGQAVAATRHALRLMFLCWKRWKAWHFQRRQQWQQQMMKKGLSVDV
DKWREGRGRLRALALLLVGVRHQRRMQRGEDWRKVRLALKGWTSFLHVCT
KRSAVKESLARVVEVGEMARLVGKSEKALQQWRERTRRRVGGVVRLEVGE
TRWRERRLSQAWEGWKGWARWQGRQERGWGREGCGGTR*
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Synonyms
Publications