NO10G03230, NO10G03230 (gene) Nannochloropsis oceanica

Overview
NameNO10G03230
Unique NameNO10G03230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr10:909274..910188 +

Link to JBrowse

Properties
Property NameValue
DescriptionSerine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:909274..910188 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO10G03230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03230.1NO10G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03230.1NO10G03230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03230 ID=NO10G03230|Name=NO10G03230|organism=Nannochloropsis oceanica|type=gene|length=915bp
ATGACCCTGGTTTTCGACCGCATGACCGAGCCAGAGCTCCGCGCCTGGTT
GGATGCCAACCCTCATAGCGTCAATGCCCGAAATATGGATGGCGAGACCT
GCCTGTTCCGTGCCGTCAATCACTGGAAGAGCGCTTCATTGGTCATGTGG
CTTGTAGAGCGAGGGGTTAATGTAAATACCGCCGACATGTGCGGATACAC
TGCGATTCAATATGCGCGCTCAACCGAAATTCTTGATGCGCTGTTGCTTT
CTGGTGCGGACCCCACCATCCGGACGGAAAAGGGCTTCACGCTGTTGATG
GCTGAGGTCCGCTCACGTCGTTACGTGCTCGCGACTCATTTGCTGAAGGA
CTCGCGCATTCGCACCCTCATCAACGCGCAAGACCAATTTGGAAACTCAG
CATTGCACTTTGTCTGCCATGATTTGGACGATCCCGCCGTGCATCCTCTC
ATTCTGCTTTTTCTCAAATATGGAGCCAGTCTGATGCTTGAGGATGCGCG
TGGAGAGACACCCATGCGTTTACTTCAACGGCTTTACCCTACCAATCCCC
TTACCATCACCTTGGCCGACGAGATCCTAACCGTAGAGAAGACCGATGCC
CTCGTCATGACCGTCCGTAAAGTAATGGCGACGAAGAGTCCCGTCGCGAC
TTGCTTGCAACATCGCGTGGAGTGCGGCCGACCCTTACCTATAGTGGAAA
TGGCTCAGCAGTCGTGTCTCAATGACGAGAAAAGGCTTCGGGTTGGGGTG
GCGCTTTTGTCAGGCGTGGGACGAAAGGGACTGCCGAGGGATATGTTTTG
GGCAGTGCTGGATATGATTATGCCAGCATGGGACCCTTTGAGACGTTGTA
TGTCACCGCAGAAGAAGCGAGTTACAATGAAAAGGGGAGGAGCAGAAAAG
CCTATGGTGGGTTAG
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protein sequence of NO10G03230.1

>NO10G03230.1-protein ID=NO10G03230.1-protein|Name=NO10G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MTLVFDRMTEPELRAWLDANPHSVNARNMDGETCLFRAVNHWKSASLVMW
LVERGVNVNTADMCGYTAIQYARSTEILDALLLSGADPTIRTEKGFTLLM
AEVRSRRYVLATHLLKDSRIRTLINAQDQFGNSALHFVCHDLDDPAVHPL
ILLFLKYGASLMLEDARGETPMRLLQRLYPTNPLTITLADEILTVEKTDA
LVMTVRKVMATKSPVATCLQHRVECGRPLPIVEMAQQSCLNDEKRLRVGV
ALLSGVGRKGLPRDMFWAVLDMIMPAWDPLRRCMSPQKKRVTMKRGGAEK
PMVG*
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Synonyms
Publications