NO10G03210, NO10G03210 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G03210 vs. NCBI_GenBank
Match: XP_005852792.1 (ribosome recycling factor [Nannochloropsis gaditana CCMP526] >EKU23037.1 ribosome recycling factor [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 303.1 bits (775), Expect = 8.500e-79 Identity = 175/291 (60.14%), Postives = 212/291 (72.85%), Query Frame = 0 Query: 1 MRRLSSTIFAPR------RGLCRV-TLSSAINTRTRPTLMPKVLRATHPSQSVRLFSKKDKKNTAA-------------PAHHTAPHHKHAPSVGGTTHNEEPLVDLAKLQAKMERALTTLQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINVYDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSRYTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMTEEWVKKAGEMLERKRKEILTV 272 MR LS + +PR R L R S +RT L P V+ PSQ+VR FSKKD++ +A PS+GG THNE+PLVDL KLQ+KMER L L+KEFSGVRGGRPD GMFDHLHVQAYG++TPLS+VAQVTIKSPTLAVI+VYDP++L V+EA+++SKLELNPRVDGNVV+VPLPKPSAE R+ YVKLVS+ TETARQN+RK+RREG+DR+K EG+ GVGED+VRR+ KLIE+MTEEWVK+ GE LE+K+KEI+TV Sbjct: 10 MRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGL-PSQAVRNFSKKDRRKGSAXXXXXXXXXXXXXXXXXXXXXXXXXPSIGGVTHNEQPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLK------GEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
BLAST of NO10G03210 vs. NCBI_GenBank
Match: EWM25543.1 (ribosome recycling factor [Nannochloropsis gaditana]) HSP 1 Score: 302.8 bits (774), Expect = 1.100e-78 Identity = 175/291 (60.14%), Postives = 212/291 (72.85%), Query Frame = 0 Query: 1 MRRLSSTIFAPR------RGLCRV-TLSSAINTRTRPTLMPKVLRATHPSQSVRLFSKKDKKNTAA-------------PAHHTAPHHKHAPSVGGTTHNEEPLVDLAKLQAKMERALTTLQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINVYDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSRYTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMTEEWVKKAGEMLERKRKEILTV 272 MR LS + +PR R L R S +RT L P V+ PSQ+VR FSKKD++ +A PS+GG THNE+PLVDL KLQ+KMER L L+KEFSGVRGGRPD GMFDHLHVQAYG++TPLS+VAQVTIKSPTLAVI+VYDP++L V+EA+++SKLELNPRVDGNVV+VPLPKPSAE R+ YVKLVS+ TETARQN+RK+RREG+DR+K EG+ GVGED+VRR+ KLIE+MTEEWVK+ GE LE+K+KEI+TV Sbjct: 10 MRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGL-PSQAVRNFSKKDRRKGSAXXXXXXXXXXXXXXXXXXXXXXXXXPSIGGVTHNEKPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLK------GEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
BLAST of NO10G03210 vs. NCBI_GenBank
Match: WP_051417719.1 (ribosome recycling factor [Roseomonas gilardii]) HSP 1 Score: 131.7 bits (330), Expect = 3.400e-27 Identity = 74/194 (38.14%), Postives = 117/194 (60.31%), Query Frame = 0 Query: 78 THNEEPLVDLAKLQAKMERALTTLQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINVYDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSRYTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMTEEWVKKAGEMLERKRKEILTV 272 TH ++ L+ +M+ AL TL+KEF+G+R GR P + + + V+AYG + PLS+VA V++ P L + V+D V+ +V AI+ S L LNP+ +G V+ VPLP + E R K SRY E A+ +R VRR+G++ VK G E ++ + +D+ +R+ I+ +T++ VK+ E L K K+I V Sbjct: 8 THLKQDLI------RRMDGALDTLKKEFTGLRTGRASPALLEPIRVEAYGANQPLSQVANVSVAGPGLLSVQVWDKSVVKAVEVAIRDSNLGLNPQAEGQVIRVPLPPLTQERRNELAKQASRYAEAAKVAVRGVRRDGMETVK-----GWETKSEISKDDAKRHSDEIQKLTDQAVKRVDEALAEKEKDIKAV 190
BLAST of NO10G03210 vs. NCBI_GenBank
Match: WP_075798272.1 (ribosome recycling factor [Roseomonas gilardii] >APT57430.1 ribosome recycling factor [Roseomonas gilardii]) HSP 1 Score: 131.7 bits (330), Expect = 3.400e-27 Identity = 71/179 (39.66%), Postives = 111/179 (62.01%), Query Frame = 0 Query: 93 KMERALTTLQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINVYDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSRYTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMTEEWVKKAGEMLERKRKEILTV 272 +M+ AL TL+KEF+G+R GR P + + + V+AYG + PLS+VA V++ P L + V+D V+ +V AI+ S L LNP+ +G V+ VPLP + E R K SRY E A+ +R VRR+G++ VK G E ++ + +D+ +R+ I+ +T++ VK+ E L K K+I V Sbjct: 17 RMDGALDTLKKEFTGLRTGRASPALLEPIRVEAYGANQPLSQVANVSVAGPGLLSVQVWDKSVVKAVEVAIRDSNLGLNPQAEGQVIRVPLPPLTQERRNELAKQASRYAEAAKVAVRGVRRDGMETVK-----GWETKSEISKDDAKRHSDEIQKLTDQAVKRVDEALAEKEKDIKAV 190
BLAST of NO10G03210 vs. NCBI_GenBank
Match: WP_019460057.1 (MULTISPECIES: ribosome recycling factor [Roseomonas] >GAV33129.1 ribosome-recycling factor [Roseomonas sp. TAS13] >ONH84509.1 ribosome recycling factor [Roseomonas mucosa] >ATR20081.1 ribosome-recycling factor [Roseomonas sp. FDAARGOS_362]) HSP 1 Score: 131.0 bits (328), Expect = 5.800e-27 Identity = 72/182 (39.56%), Postives = 111/182 (60.99%), Query Frame = 0 Query: 90 LQAKMERALTTLQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINVYDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSRYTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMTEEWVKKAGEMLERKRKEILTV 272 L +M+ AL TL+KEFSG+R GR P + + + V+AYG + PLS+VA V++ P L + V+D V+ +V AI+ S L LNP+ +G V+ VPLP + E R K SRY E A+ +R VRR+G++ VK E ++ + +D+ +R+ I+ +T++ VK+ E L K K+I V Sbjct: 14 LVRRMDGALDTLKKEFSGLRTGRASPALLEPIRVEAYGANQPLSQVANVSVAGPGLLSVQVWDKSVVKAVEVAIRDSSLGLNPQAEGQVIRVPLPPLTQERRNELAKQASRYAEAAKVAVRGVRRDGMETVK-----AWETKSEISKDDAKRHSDEIQKLTDQAVKRVDEALAEKEKDIKAV 190
BLAST of NO10G03210 vs. NCBI_GenBank
Match: OFX05935.1 (ribosome recycling factor [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_12]) HSP 1 Score: 131.0 bits (328), Expect = 5.800e-27 Identity = 67/189 (35.45%), Postives = 113/189 (59.79%), Query Frame = 0 Query: 83 PLVDLAKLQAKMERALTTLQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINVYDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSRYTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMTEEWVKKAGEMLERKRKEILTV 272 P ++ L+ +M+ AL +L+ EFSG+R GR + +H+ V AYG P+++V V + P + I V+D ++S+V+ AI+ + + +NP VDG V +P+P + E R+ + K+ +Y E AR IR VRREG+D++K+ GVGED+ +R + ++ +T+ +KK E + K EI+ V Sbjct: 4 PGANMKDLEKRMDGALASLKSEFSGLRSGRASASLVEHIMVDAYGSHMPVNQVGSVNVPEPRMISIGVWDKALVSAVDRAIRDAGIGVNPIVDGTNVRIPIPPLTEERRKEFTKVAHKYAEAARVAIRNVRREGMDQIKKA--------EGVGEDDQKRQSEQVQKLTDAMIKKVDEAVAAKEAEIMQV 184
BLAST of NO10G03210 vs. NCBI_GenBank
Match: WP_011384876.1 (ribosome-recycling factor [Magnetospirillum magneticum] >Q2W4C6.1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor >BAE51299.1 Ribosome recycling factor [Magnetospirillum magneticum AMB-1]) HSP 1 Score: 130.6 bits (327), Expect = 7.500e-27 Identity = 71/187 (37.97%), Postives = 118/187 (63.10%), Query Frame = 0 Query: 86 DLAK-LQAKMERALTTLQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINVYDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSRYTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMTEEWVKKAGEMLERKRKEILTV 272 DL K + +M+ A+ L+KEFSG+R GR + D + V+AYG++ PLS+ V + P + + V+D + +V +AI ++ L LNP+ DG ++ VP+P + E R+ K+ +Y+E AR ++R VRR+G+D +K+ + G + EDE++++EK I+A+T+E +KK E L K KEI+ V Sbjct: 9 DLKKDITRRMDSAVEVLKKEFSGLRSGRASINLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLTVQVWDKSQVKAVEKAIANAGLGLNPQADGQMIRVPIPPLNEERRKELQKVAGKYSEQARISVRNVRRDGMDTLKKMEKDGH-----ISEDEIKKHEKEIQAITDETIKKIDEALGHKEKEIMQV 190
BLAST of NO10G03210 vs. NCBI_GenBank
Match: WP_072748366.1 (ribosome recycling factor [Oceanicella actignis] >SET84400.1 ribosome recycling factor [Oceanicella actignis] >SHN76474.1 ribosome recycling factor [Oceanicella actignis]) HSP 1 Score: 130.2 bits (326), Expect = 9.800e-27 Identity = 70/187 (37.43%), Postives = 113/187 (60.43%), Query Frame = 0 Query: 85 VDLAKLQAKMERALTTLQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINVYDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSRYTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMTEEWVKKAGEMLERKRKEILTV 272 +D LQ +M+ AL L+ EF+ +R GR M D++ V AYG TP+++VA V + P + INV+D ++ V +AI++S L +NP VDG ++ +P+P+ + E R K+ +Y E AR +R VRR+G+D VK K G+ ED+ + I++MT++ + + E+LERK+ EI+ V Sbjct: 7 IDTDDLQRRMDGALAALKAEFASLRTGRASASMLDNILVDAYGAPTPINQVATVNVPEPRMITINVWDKSLVGKVEKAIRASGLGINPVVDGTILRLPIPELNEERRRELAKVAGQYAEQARIAVRNVRRDGMDMVK------KAKAAGMSEDDQKMWSDEIQSMTDKTIARIDELLERKQAEIMQV 187
BLAST of NO10G03210 vs. NCBI_GenBank
Match: WP_038033647.1 (ribosome recycling factor [Thermopetrobacter sp. TC1]) HSP 1 Score: 129.8 bits (325), Expect = 1.300e-26 Identity = 68/187 (36.36%), Postives = 114/187 (60.96%), Query Frame = 0 Query: 85 VDLAKLQAKMERALTTLQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINVYDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSRYTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMTEEWVKKAGEMLERKRKEILTV 272 +DL L+ +ME A+ L++EF+G+R GR + +H+ V AYG P++++ +++ P L + V+D V+S+V +AI+ + L LNP+ +GNV+ VP+P+ S E R+ ++ +Y E AR +R VRR+G++ +KR E + EDE RR ++ +T ++KK EML K EI+ V Sbjct: 7 LDLKDLKRRMEGAVNVLKEEFAGLRTGRASAALLEHIQVNAYGSKMPINQLGTISVPEPRLLSVQVWDASVVSAVEKAIREANLGLNPQTEGNVIRVPIPELSKERRKELSRVAHQYAEQARVAVRNVRRDGMETLKR-----LEKEHQISEDEHRRLADEVQELTNTYIKKIDEMLAAKDAEIMQV 188
BLAST of NO10G03210 vs. NCBI_GenBank
Match: WP_008615509.1 (ribosome recycling factor [Magnetospirillum caucaseum] >EME70808.1 ribosome recycling factor [Magnetospirillum caucaseum]) HSP 1 Score: 129.4 bits (324), Expect = 1.700e-26 Identity = 70/187 (37.43%), Postives = 117/187 (62.57%), Query Frame = 0 Query: 86 DLAK-LQAKMERALTTLQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINVYDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSRYTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMTEEWVKKAGEMLERKRKEILTV 272 DL K + +M+ A+ L+KEFSG+R GR + D + V+AYG++ PLS+ V + P + + V+D + +V +AI ++ L LNP+ DG + VP+P + E R+ K+ +Y+E AR ++R VRR+G+D +K+ + G + EDE++++EK I+++T+E +KK E L K KEI+ V Sbjct: 9 DLKKDITRRMDSAVEVLKKEFSGLRSGRASVNLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLTVQVWDKSQVKAVEKAIANAGLGLNPQADGQTIRVPIPALNEERRKELQKVAGKYSEQARISVRNVRRDGMDTLKKMEKDGH-----ISEDEIKKHEKEIQSITDETIKKIDEALGHKEKEIMQV 190 The following BLAST results are available for this feature:
BLAST of NO10G03210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G03210 ID=NO10G03210|Name=NO10G03210|organism=Nannochloropsis oceanica|type=gene|length=1607bpback to top protein sequence of NO10G03210.1 >NO10G03210.1-protein ID=NO10G03210.1-protein|Name=NO10G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bpback to top Synonyms
Publications
|