NO10G03070, NO10G03070 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G03070 vs. NCBI_GenBank
Match: EWM25510.1 (splicing factor 3a subunit 2 [Nannochloropsis gaditana]) HSP 1 Score: 389.0 bits (998), Expect = 2.200e-104 Identity = 189/205 (92.20%), Postives = 198/205 (96.59%), Query Frame = 0 Query: 207 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFREKGAEGGG 412 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAA+EAKEQQYRPNKPT+VAARR+MKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRV+STK+REWQYLLFACEPYET+GFKIPNVEIDKGEGRF S WD KA+KF+LQLYFRE+G G Sbjct: 1 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAG 205
BLAST of NO10G03070 vs. NCBI_GenBank
Match: CBN77971.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 358.6 bits (919), Expect = 3.200e-95 Identity = 179/279 (64.16%), Postives = 215/279 (77.06%), Query Frame = 0 Query: 128 IHNISKSRKSTVEKQEEECLKGIPAGLQRLTLGGRHLRDEQTLAESAVVGH-TTLHLLLPLPGGIDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFREK 406 + ++ R ST+ + E L G+P LQRLT G R L + + H T+ L L L GGIDFQHR+GSKFGGGG MSE A DRRERLRKLA ET+DLNKDPYFMRNHLG YECKLCLTLHNNEGNYLAHTQGKRHQ+NLARRAA EAK +P V R V+KIGRPGYKVTKARDLS+ QRSL+FE+DYP+AE+ QPRHRFMSA+EQ+V++ D+ +QYLLFAC+PYET+GFK+PN++IDK EGRF ++W+ +AKKF LQLYF ++ Sbjct: 17 VSSLRDYRVSTL-RSAVEGLSGVPPHLQRLTSGARDLASPSASLDDYGIEHGCTVRLSLRLLGGIDFQHREGSKFGGGGVMSEGQAAVDRRERLRKLAQETVDLNKDPYFMRNHLGKYECKLCLTLHNNEGNYLAHTQGKRHQQNLARRAAMEAKNALVKPQPAITVQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEA-PDKGYQYLLFACDPYETIGFKVPNLKIDKQEGRFFTNWEKEAKKFTLQLYFEDE 293
BLAST of NO10G03070 vs. NCBI_GenBank
Match: OQS04647.1 (splicing factor 3A subunit [Thraustotheca clavata]) HSP 1 Score: 308.5 bits (789), Expect = 3.800e-80 Identity = 156/264 (59.09%), Postives = 190/264 (71.97%), Query Frame = 0 Query: 141 KQEEECLKGIPAGLQRLTLGGRHLRDEQTLAESAVVGHTTLHLLLPLPGGIDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKE--QQYRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYF 403 K + L GIPA L L L D L++ +V +TL+ L+ L GG+DFQ+R G+KFGGGG MSE AN DRRERLRKLALET+DL+KDPY ++NHLG++ECKLCLTLH+NEGNYLAHTQGKRHQ NLARRAAK+A E P + V R +KIG PGYKVTK RD T R L+F+I YP + QPRHRFMSAFEQRV+ D+ +QYLLFACEPYET+ FKIPN+E+DK +G+F ++WD K F L + F Sbjct: 27 KYQVSKLMGIPASLFNLAFNAHQLIDANYLSDYGIVHGSTLNALMSLKGGMDFQNRVGTKFGGGGVMSEQQANIDRRERLRKLALETVDLSKDPYILKNHLGTFECKLCLTLHSNEGNYLAHTQGKRHQTNLARRAAKDAAEASASVPPPQKLDVPKIRTIKIGLPGYKVTKQRDPDTGARMLLFQIFYPDIMDGYQPRHRFMSAFEQRVE-VADKNFQYLLFACEPYETIAFKIPNLEVDKSDGKFYTNWDKSGKSFTLHVAF 289
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_022094954.1 (splicing factor 3A subunit 2-like [Acanthaster planci]) HSP 1 Score: 298.5 bits (763), Expect = 4.000e-77 Identity = 155/247 (62.75%), Postives = 191/247 (77.33%), Query Frame = 0 Query: 191 IDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRP---NKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFR--EKGAEGGGREGG---RGTPVPDHLQRNEG 430 +DFQHR G K GGGG SES +N DRRERLR+LALETIDLNKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAAKEAK+ +P KP V ++ +KIGRPGYKVTK RD + Q+SL+F+IDYP+ E + PRHRFMSA+EQRV+ D+ WQYLLFA EPYET+ FK+P+ E+DK E +F +SW+ + K+F LQ +F+ K +GGG G RG P+PD+ + N+G Sbjct: 1 MDFQHRAGGKTGGGGVASESESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQSNLARRAAKEAKDAPAQPALLEKPK-VDIKKFVKIGRPGYKVTKQRDPNLGQQSLLFQIDYPEIAEGIVPRHRFMSAYEQRVE-PPDKRWQYLLFAAEPYETIAFKVPSREVDKSEAKFWTSWNKETKQFFLQFHFKMEPKPMQGGGDGPGPRIRG-PMPDNHRSNQG 244
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_008610743.1 (hypothetical protein SDRG_06723 [Saprolegnia diclina VS20] >EQC35981.1 hypothetical protein SDRG_06723 [Saprolegnia diclina VS20]) HSP 1 Score: 295.0 bits (754), Expect = 4.400e-76 Identity = 149/259 (57.53%), Postives = 186/259 (71.81%), Query Frame = 0 Query: 147 LKGIPAGLQRLTLGGRHLRDEQTLAESAVVGHTTLHLLLPLPGGIDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQ---YRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYF 403 L G+PA L +L+ R L + + + + +TL + L GG+DFQ+R GSK G GG SE AN DRRERLRKLALET+DL+KDPY ++NHLG++ECKLCLTLH+NEGNYLAHTQGKRHQ NLARRAAK+A E P KP + R + KIG PGYKVTK RD T R L+F+I YP + +QPRHRFMSAFEQRV+ D+ +QYLLFACEPYET+ FK+PN+++DK EG+F ++WD K F L + F Sbjct: 33 LMGVPAALFKLSFNARLLVETNFVHDYCITHGSTLAASMALKGGMDFQNRVGSKPGSGGVASEQQANIDRRERLRKLALETVDLSKDPYILKNHLGTFECKLCLTLHSNEGNYLAHTQGKRHQTNLARRAAKDAAEASANVQAPPKPEIQRIRTI-KIGLPGYKVTKQRDPDTGARMLLFQIFYPDVMDGLQPRHRFMSAFEQRVE-VADKNFQYLLFACEPYETIAFKVPNLDVDKSEGKFFTNWDKLGKSFTLHVTF 289
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_012199186.1 (hypothetical protein SPRG_05192 [Saprolegnia parasitica CBS 223.65] >KDO30003.1 hypothetical protein SPRG_05192 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 293.5 bits (750), Expect = 1.300e-75 Identity = 148/259 (57.14%), Postives = 185/259 (71.43%), Query Frame = 0 Query: 147 LKGIPAGLQRLTLGGRHLRDEQTLAESAVVGHTTLHLLLPLPGGIDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQ---YRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYF 403 L G+P L +L+ R L + + + + +TL + L GG+DFQ+R GSK G GG SE AN DRRERLRKLALET+DL+KDPY ++NHLG++ECKLCLTLH+NEGNYLAHTQGKRHQ NLARRAAK+A E P KP + R + KIG PGYKVTK RD T R L+F+I YP + +QPRHRFMSAFEQRV+ D+ +QYLLFACEPYET+ FK+PN+++DK EG+F ++WD K F L + F Sbjct: 33 LMGVPVALFKLSFNARLLVETNFVHDYCITHGSTLAASMALKGGMDFQNRVGSKPGSGGVASEQQANIDRRERLRKLALETVDLSKDPYILKNHLGTFECKLCLTLHSNEGNYLAHTQGKRHQTNLARRAAKDAAEASANVQAPPKPEIQRIRTI-KIGLPGYKVTKQRDPDTGARMLLFQIFYPDVMDGLQPRHRFMSAFEQRVE-VADKNFQYLLFACEPYETIAFKVPNLDVDKSEGKFFTNWDKLGKSFTLHVTF 289
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_009037864.1 (hypothetical protein AURANDRAFT_28099 [Aureococcus anophagefferens] >EGB07228.1 hypothetical protein AURANDRAFT_28099 [Aureococcus anophagefferens]) HSP 1 Score: 292.4 bits (747), Expect = 2.900e-75 Identity = 146/225 (64.89%), Postives = 171/225 (76.00%), Query Frame = 0 Query: 194 QHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFRE--KGAEGGGREGGR 417 Q R S+ GGGG S AN DRRERLRKLALET+DLNKDPYFMRNHLG+YECKLCLTLHN EGNYLAHTQGKRHQ+NLARRA KEA++ P V R +KIGRPGYKVTK+RD +T QR L+FE+DYP+A++ QPRHRFMSA+EQRV+ D+ +QYLLFACEPYET+GFKIPN ++DK +GRF ++WD KKF L L F + K A GR Sbjct: 4 QDRVNSRHGGGGVQSSEQANVDRRERLRKLALETVDLNKDPYFMRNHLGTYECKLCLTLHNTEGNYLAHTQGKRHQQNLARRAFKEARDAPIAPAATRYVEKRHTIKIGRPGYKVTKSRDAATSQRCLLFEVDYPEADDASQPRHRFMSAYEQRVE-PPDKAYQYLLFACEPYETIGFKIPNHDVDKDQGRFFTNWDVVGKKFTLSLQFDDDAKPAPAQAASAGR 227
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_013876667.1 (PREDICTED: splicing factor 3A subunit 2 [Austrofundulus limnaeus] >XP_013876673.1 PREDICTED: splicing factor 3A subunit 2 [Austrofundulus limnaeus]) HSP 1 Score: 291.6 bits (745), Expect = 4.900e-75 Identity = 143/218 (65.60%), Postives = 172/218 (78.90%), Query Frame = 0 Query: 191 IDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTV-VAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFREKGA 408 +DFQHR G K G GG S S +N DRRERLR+LALETID+NKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAAKEAKE +P V V ++ +KIGRPGYKVTK RD T Q+SL+F+IDYP+ E + PRHRFMSA+EQR++ DR WQYLLFA EPYET+ FK+P+ EIDK E RF + W+ + K+F LQ +F+ + A Sbjct: 1 MDFQHRAGGKTGSGGVASASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKESPAQPAPAKVKVEVKKFVKIGRPGYKVTKQRDPETGQQSLLFQIDYPEIAEGIGPRHRFMSAYEQRIE-PPDRRWQYLLFAAEPYETIAFKVPSREIDKAENRFWTHWNKETKQFFLQFHFKMEKA 217
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_015812655.1 (PREDICTED: splicing factor 3A subunit 2 [Nothobranchius furzeri]) HSP 1 Score: 291.6 bits (745), Expect = 4.900e-75 Identity = 146/223 (65.47%), Postives = 174/223 (78.03%), Query Frame = 0 Query: 191 IDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKE--QQYRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFREKGAEGGG 412 +DFQHR G K G GG S S +N DRRERLR+LALETID+NKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAAKEAKE Q P K V ++ +KIGRPGYKVTK RD T Q+SL+F+IDYP+ E + PRHRFMSA+EQR++ DR WQYLLFA EPYET+ FK+P+ EIDK E RF + W+ + K+F LQ +F+ + A GG Sbjct: 1 MDFQHRAGGKTGSGGVASASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQXAPAK-VKVEVKKFVKIGRPGYKVTKQRDPETGQQSLLFQIDYPEVAEGIGPRHRFMSAYEQRIE-PPDRRWQYLLFAAEPYETISFKVPSREIDKAENRFWTHWNRETKQFFLQFHFKMEKAISGG 221
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_020381781.1 (splicing factor 3A subunit 2 [Rhincodon typus] >XP_020381787.1 splicing factor 3A subunit 2 [Rhincodon typus] >XP_020381793.1 splicing factor 3A subunit 2 [Rhincodon typus] >XP_020381801.1 splicing factor 3A subunit 2 [Rhincodon typus]) HSP 1 Score: 291.2 bits (744), Expect = 6.400e-75 Identity = 142/214 (66.36%), Postives = 170/214 (79.44%), Query Frame = 0 Query: 191 IDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTV-VAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFR 404 +DFQHR G K G GG S S +N DRRERLR+LALETID+NKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAAKEAKE +P V V ++ +KIGRPGYKVTK RD Q+SL+F+IDYP+ E V PRHRFMSA+EQR++ DR WQYLLFA EPYET+ FK+P+ EIDK EG+F + W+ + K+F LQ +F+ Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKESPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDAEVGQQSLLFQIDYPEIAEGVIPRHRFMSAYEQRIE-PPDRRWQYLLFAAEPYETISFKVPSREIDKVEGKFWTHWNRETKQFFLQFHFK 213 The following BLAST results are available for this feature:
BLAST of NO10G03070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G03070 ID=NO10G03070|Name=NO10G03070|organism=Nannochloropsis oceanica|type=gene|length=5485bpback to top protein sequence of NO10G03070.1 >NO10G03070.1-protein ID=NO10G03070.1-protein|Name=NO10G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bpback to top Synonyms
Publications
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