NO10G03030, NO10G03030 (gene) Nannochloropsis oceanica

Overview
NameNO10G03030
Unique NameNO10G03030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1120
Alignment locationchr10:842351..843470 +

Link to JBrowse

Properties
Property NameValue
DescriptionGnat family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:842351..843470 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016181Acyl_CoA_acyltransferase
IPR000182GNAT_dom
Homology
BLAST of NO10G03030 vs. NCBI_GenBank
Match: EWM25517.1 (gnat family [Nannochloropsis gaditana])

HSP 1 Score: 263.1 bits (671), Expect = 9.400e-67
Identity = 151/252 (59.92%), Postives = 192/252 (76.19%), Query Frame = 0
Query:   18 SGIKLAHS--LRQSRQSSTTFGRLGLHSSRSRSSSIAT----SASVTSLSPVQAV--TLTQVEIRQATVKDFPAIAESRKAIIFVPKQGGGSGAGAIRRALEEATSKEEREILSKIPYLVTKQAIAFIAVGRPCLSPGGARGSSSSSRPRVVGTVDVFEREAEGSTLPRRLFLKNMIVDEAFRRQGFARRLLSRVEEHARNIGIKEVYLEVLANNEGAIQLYTQQGFQFTSNPMELLWRVLGIGRVTMVKKL 262
            + ++L HS  LR S  +  +    G  +S S S    +     A+VTS +P  ++  TL+Q+EIR+ATV+DFPAIA +RK IIFVPKQGGG+GAG +RRALE A+S+EERE+LSKIPYLVT QAIAFIA+G+P +S GG+ GSS     RV+GTVDVFER+ EG +LPRRLFLKNMIVD  FRRQG ARRLL+R E+HAR +GIKE++LEVLANNE A  LY +QGF++T  P++ LWR+L IG+VTM K+L
Sbjct:   57 ASLQLQHSTCLRSSLTAIYSASSRGCRASSSTSIKSGSLNIFPAAVTSSAPNLSLPRTLSQIEIRRATVRDFPAIASTRKTIIFVPKQGGGNGAGVVRRALENASSQEEREMLSKIPYLVTGQAIAFIAIGKPKISLGGS-GSS-----RVIGTVDVFERDREGPSLPRRLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGFEYTRGPLDSLWRLLKIGKVTMTKRL 302          
BLAST of NO10G03030 vs. NCBI_GenBank
Match: XP_005771311.1 (hypothetical protein EMIHUDRAFT_102363 [Emiliania huxleyi CCMP1516] >EOD18882.1 hypothetical protein EMIHUDRAFT_102363 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 71.2 bits (173), Expect = 5.200e-9
Identity = 54/163 (33.13%), Postives = 80/163 (49.08%), Query Frame = 0
Query:   80 DFPAIAESRKAIIFVPKQGGGSGAGAIRRALEEATSKEEREILSKIPYLVTKQAIAFIAVGRPCLSPGGARGSSSSSRPRVVGTVDVFE------REAEGSTLPRRLFLKNMIVDEAFRRQGFARRLLSRVEEHARNIGIKEVYLEVLANNEGAIQLYTQQGF 237
            D  A+   RK + FV +QG     G +  A+ E      R + +++   +  +A   IA              + ++   V+GTVD         R A G  LP+RL ++N+ V EAFRRQG  RRL+   EE A  + I+ + L+VLA+NE A +LY   GF
Sbjct:   40 DCEALCCVRKPVEFVVEQGSKGFLGQV--AVLEPEVARRRRVQARLGSAIRDKARVLIA------------ADAGAAELAVIGTVDCVALPAGKGRRAMGPELPQRLLIRNLWVAEAFRRQGIGRRLMDAAEELAAEMHIEFLSLDVLADNEPARRLYESLGF 188          
BLAST of NO10G03030 vs. NCBI_GenBank
Match: XP_005771274.1 (hypothetical protein EMIHUDRAFT_102336 [Emiliania huxleyi CCMP1516] >EOD18845.1 hypothetical protein EMIHUDRAFT_102336 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 70.5 bits (171), Expect = 8.900e-9
Identity = 54/163 (33.13%), Postives = 80/163 (49.08%), Query Frame = 0
Query:   80 DFPAIAESRKAIIFVPKQGGGSGAGAIRRALEEATSKEEREILSKIPYLVTKQAIAFIAVGRPCLSPGGARGSSSSSRPRVVGTVDVFE------REAEGSTLPRRLFLKNMIVDEAFRRQGFARRLLSRVEEHARNIGIKEVYLEVLANNEGAIQLYTQQGF 237
            D  A+   RK + FV +QG     G +  A+ E      R + +++   +  +A   IA              + ++   V+GTVD         R A G  LP+RL ++N+ V EAFRRQG  RRL+   EE A  + I+ + L+VLA+NE A +LY   GF
Sbjct:   40 DCEALCCVRKPVEFVVEQGSKGFLGQV--AVLEPEVARRRRVQARLGSAIRDKARVLIA------------ADAGAAELAVIGTVDCVALPAGKGRRAMGPELPQRLLIRNLWVAEAFRRQGIGRRLMDAAEELAAEMHIEFLSLDVLADNEPARRLYEGLGF 188          
BLAST of NO10G03030 vs. NCBI_GenBank
Match: WP_106232941.1 (GNAT family N-acetyltransferase [Pleurocapsa sp. CCALA 161] >PSB12416.1 GNAT family N-acetyltransferase [Pleurocapsa sp. CCALA 161])

HSP 1 Score: 68.2 bits (165), Expect = 4.400e-8
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 0
Query:  152 SSSSSRPRVVGTVDVFEREAEGSTLPRRLFLKNMIVDEAFRRQGFARRLLSRVEEHARNIGIKEVYLEVLANNEGAIQLYTQQGFQFT 240
            + S+S+P +VGT++V  R A  ST P+  ++ N+ V + +RR G A +LL+  E+ A + G +E  L VL  NE A QLY Q G+Q +
Sbjct:   86 AQSNSQPLIVGTIEVALRSALWSTSPQYPYISNLAVAQNYRRLGIASQLLTACEQAALDWGYQETQLHVLDRNESAKQLYCQNGYQIS 173          
BLAST of NO10G03030 vs. NCBI_GenBank
Match: CBJ25814.1 (acetyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 66.2 bits (160), Expect = 1.700e-7
Identity = 71/257 (27.63%), Postives = 116/257 (45.14%), Query Frame = 0
Query:   27 RQSRQSSTTF----GRLGLHSSRSRSSSIATSASVTSLSPVQAVTLTQVEIRQATVKDFPAIAESRKAIIFVPKQGGGSGAGAIRRALEEATSKEEREILSKIPYLVTKQAIAFIAVGRPCLSPGGARGSSSSSRPRVVGTVDVFEREAEGST-----------LPR--RLFLKNMIVDEAFRRQGFARRLLSRVEEHARNIGIKEVYLEVLANNEGAIQLYTQQGFQFTSNPMEL-------LWRVLGIGRVTMVK 260
            R+++ + T F     RLG +++ +  S+    +S       +A    +V +R+A   D+  +AE R  II V   G     G  +  +++    E R +++K+  LV+ +++A IA+                   R+VGTVD   R A  +            +P+   +FLKN+ V    RRQG AR L++  E  AR    + V L+V   N+ A +LY   GF+    P  +       L R LG+G+  MVK
Sbjct:   93 RRAKLNKTMFVLKGTRLGANAAAAGGSTEKAGSSKLGKGGQKA----RVTVRRAREPDYQGVAEIRGVIIPVGMSGATGFLGG-KVVIDDPAEAERRLLMAKVADLVSGESVALIAL----------------EGQRIVGTVDCIIRSAAATVDTLGQPKQQPEIPKANEVFLKNLFVLPERRRQGIARELVNGAEVFARQEKARTVCLDVARQNDAARELYLSCGFEEAERPGPIEGGMGGALLRSLGMGKKYMVK 328          
BLAST of NO10G03030 vs. NCBI_GenBank
Match: WP_013325120.1 (GNAT family N-acetyltransferase [Cyanothece sp. PCC 7822] >ADN17082.1 GCN5-related N-acetyltransferase [Cyanothece sp. PCC 7822])

HSP 1 Score: 65.5 bits (158), Expect = 2.900e-7
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0
Query:  152 SSSSSRPRVVGTVDVFEREAEGSTLPRRLFLKNMIVDEAFRRQGFARRLLSRVEEHARNIGIKEVYLEVLANNEGAIQLYTQQGFQ 238
            +SS+    ++GTV++  R +E ST P   ++ N+ V    RRQG AR++L + E+ A   G KE+YL VL +N  A QLY   G+Q
Sbjct:   93 ASSTEEEEIIGTVEISLR-SEWSTTPNSAYISNLAVSHHCRRQGVARKMLRKCEQIALEWGFKELYLHVLEDNHVAKQLYLNGGYQ 177          
BLAST of NO10G03030 vs. NCBI_GenBank
Match: WP_006634463.1 (N-acetyltransferase [Microcoleus vaginatus] >EGK85873.1 GCN5-related N-acetyltransferase [Microcoleus vaginatus FGP-2])

HSP 1 Score: 63.9 bits (154), Expect = 8.300e-7
Identity = 41/115 (35.65%), Postives = 57/115 (49.57%), Query Frame = 0
Query:  148 GARGSSSSSRPRVVGTVDVFEREAEGSTLPRR--LFLKNMIVDEAFRRQGFARRLLSRVEEHARNIGIKEVYLEVLANNEGAIQLYTQQGFQFTSNPMELLWRVLGIGRVTMVKK 261
            G +   S    R+ GTV++  R      +P     +L N+ V   +RRQG A++LLS  EE AR  G  E+YL VL NN  A QLY Q G++          R+ G  R   ++K
Sbjct:   88 GTQNYRSHRDQRMAGTVEMALRSRFPWQIPSSDYPYLSNLAVHPDYRRQGVAQQLLSNCEETAREWGFSEIYLHVLENNHAARQLYYQAGYRLQQVDWNWTGRLFGQPRRLFLRK 202          
BLAST of NO10G03030 vs. NCBI_GenBank
Match: WP_096831386.1 (N-acetyltransferase [Tychonema bourrellyi] >PHX54525.1 N-acetyltransferase [Tychonema bourrellyi FEM_GT703])

HSP 1 Score: 63.9 bits (154), Expect = 8.300e-7
Identity = 40/103 (38.83%), Postives = 54/103 (52.43%), Query Frame = 0
Query:  160 VVGTVDVFEREAEGSTLPRR--LFLKNMIVDEAFRRQGFARRLLSRVEEHARNIGIKEVYLEVLANNEGAIQLYTQQGFQFTSNPMELLWRVLGIGRVTMVKK 261
            + GTV+V  R      LP     +L N+ V   +RRQG A++LLS  E+  R  G  EVYL VL NN GA QLY Q G++      +    +LG  R   ++K
Sbjct:   97 IAGTVEVALRSRLAWQLPSSDYPYLSNLAVHPEYRRQGVAQQLLSSCEQTVREWGFSEVYLHVLENNHGARQLYYQTGYRLEQVEWDWSCWLLGQPRRLFLRK 199          
The following BLAST results are available for this feature:
BLAST of NO10G03030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM25517.19.400e-6759.92gnat family [Nannochloropsis gaditana][more]
XP_005771311.15.200e-933.13hypothetical protein EMIHUDRAFT_102363 [Emiliania ... [more]
XP_005771274.18.900e-933.13hypothetical protein EMIHUDRAFT_102336 [Emiliania ... [more]
WP_106232941.14.400e-840.91GNAT family N-acetyltransferase [Pleurocapsa sp. C... [more]
CBJ25814.11.700e-727.63acetyltransferase [Ectocarpus siliculosus][more]
WP_013325120.12.900e-740.70GNAT family N-acetyltransferase [Cyanothece sp. PC... [more]
WP_006634463.18.300e-735.65N-acetyltransferase [Microcoleus vaginatus] >EGK85... [more]
WP_096831386.18.300e-738.83N-acetyltransferase [Tychonema bourrellyi] >PHX545... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001177NSK001177Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03030.1NO10G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585767gene_3901Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g17gene4985Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03030.1NO10G03030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03030 ID=NO10G03030|Name=NO10G03030|organism=Nannochloropsis oceanica|type=gene|length=1120bp
ATGGGCGAgtgagtgcttgacgggggggactgacttgtgggaagaccttg
cgtcgttcgacttgcgtcgttctgccaccgcttcagttgtagtacactct
ctatcaacgctatgtgtggctgtagggtcgtgtgaaaacgaatgcattcg
caagaggcaaaactggacatgcaaaagaggccgcctctcagcgaggcgat
gacctcccctccttctcattctcgactcagacacaaaaaccacgcataca
gCACAGAAAGCAGCAGCAGCAGCAGCGGCAGCCGCAAGCATGATAGCGGC
ATCAAGCTCGCGgtcatgcagcagaagccgtgggagaagaagagtgtatt
ttcatcttttcctcttcctcctgctgctgccctatctcgcctcctctttc
cagCATTCGCTTCGACAAAGCCGGCAGTCCTCCACCACCTTCGGTCGTCT
CGGCCTTCACAGCAGCAGAAGTAGAAGTAGTTCCATCGCCACATCCGCTT
CTGTTACCAGCCTGTCCCCAGTACAAGCAGTCACCCTCACTCAAGTTGAG
ATACGTCAGGCGACCGTCAAGGACTTTCCTGCCATAGCTGAGTCACGCAA
AGCCATCATTTTTGTGCCCAAACAAGGCGGGGGCAGTGGAGCCGGGGCCA
TCCGTCGCGCCCTCGAGGAAGCTACATCTAAAGAAGAACGTGAAATTCTC
TCCAAAATTCCCTATTTAGTTACAAAGCAGGCAATTGCATTTATCGCGGT
AGGTCGACCATGTCTTAGCCCAGGGGGCGCGCGTGGCAGCAGCAGCAGCA
GCAGACCCCGGGTGGTGGGGACGGTGGATGTTTTTGAACGAGAGGCGGAA
GGCTCGACATTACCTCGAAGATTATTTCTTAAGAATATGATTGTGGACGA
GGCCTTTCGAAGGCAGGGGTTCGCACGTCGTCTCCTCTCGAGGGTTGAGG
AACATGCAAGGAACATAGGGATCAAAGAAGTGTATTTGGAAGTGCTTGCA
AATAATGAGGGGGCCATACAGCTGTATACACAGCAAGGATTCCAGTTCAC
ATCGAATCCTATGGAGTTGCTGTGGCGGGTGTTGGGGATTGGGAGAGTTA
CGATGGTGAAGAAGTTGTGA
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protein sequence of NO10G03030.1

>NO10G03030.1-protein ID=NO10G03030.1-protein|Name=NO10G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MGDTESSSSSSGSRKHDSGIKLAHSLRQSRQSSTTFGRLGLHSSRSRSSS
IATSASVTSLSPVQAVTLTQVEIRQATVKDFPAIAESRKAIIFVPKQGGG
SGAGAIRRALEEATSKEEREILSKIPYLVTKQAIAFIAVGRPCLSPGGAR
GSSSSSRPRVVGTVDVFEREAEGSTLPRRLFLKNMIVDEAFRRQGFARRL
LSRVEEHARNIGIKEVYLEVLANNEGAIQLYTQQGFQFTSNPMELLWRVL
GIGRVTMVKKL*
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Synonyms
Publications