NO10G02970, NO10G02970 (gene) Nannochloropsis oceanica

Overview
NameNO10G02970
Unique NameNO10G02970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length372
Alignment locationchr10:824218..824589 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:824218..824589 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G02970 vs. NCBI_GenBank
Match: EWM25523.1 (hypothetical protein Naga_100032g23 [Nannochloropsis gaditana])

HSP 1 Score: 131.7 bits (330), Expect = 1.500e-27
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 0 
Query:    1 MPVFHQLFLEWVDVPSNQSINDTAHAAGLDFGDWLLSKGSNVTETLAGIIQPLLLTHVTTLLWQHYAIDLIEQHRRGGESWRRLAPFRRVLPSRWFGRW 100
            MPVFH+LFLEWV++P+ Q+ N +   A +DFGDWLL+KGSN TET+  I+QPL+ THVTT++WQHYA+  +E H +    W R AP RRVLP  W  +W
Sbjct:    1 MPVFHELFLEWVELPTQQTTNGSL-TAEVDFGDWLLAKGSNCTETITKIVQPLIFTHVTTMIWQHYAVGFLETHEQNLGFWNRFAPLRRVLPPGWLRQW 98
The following BLAST results are available for this feature:
BLAST of NO10G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25523.11.500e-2756.57hypothetical protein Naga_100032g23 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001170NSK001170Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02970.1NO10G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100032g23gene4990Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02970.1NO10G02970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02970 ID=NO10G02970|Name=NO10G02970|organism=Nannochloropsis oceanica|type=gene|length=372bp
ATGCCCGTCTTCCATCAGCTTTTCCTGGAATGGGTTGACGTTCCCAGCAA
CCAAAGCATCAATGACACAGCCCACGCCGCCGGCCTGGATTTCGGTGACT
GGCTTTTGAGCAAGGGGAGCAATGTCACTGAGACGTTAGCGGGGATTATC
CAACCGCTGTTATTGACGCATGTGACCACGTTATTATGGCAGCACTATGC
GATTGATTTGATCGAACAGCATCGACGAGGAGGTGAATCATGGCGGAGGT
TAGCTCCCTTCAGGCGGGTGTTGCCGTCCAGGTGGTTTGGACGGTGGGGA
GAAGAAGAGGGGGGGGAAGGAGTTGGGGAGGAGGGGGGGGGTAGAAGCGT
CGGCATGTGGATGAGATCGTAA
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protein sequence of NO10G02970.1

>NO10G02970.1-protein ID=NO10G02970.1-protein|Name=NO10G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MPVFHQLFLEWVDVPSNQSINDTAHAAGLDFGDWLLSKGSNVTETLAGII
QPLLLTHVTTLLWQHYAIDLIEQHRRGGESWRRLAPFRRVLPSRWFGRWG
EEEGGEGVGEEGGGRSVGMWMRS*
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Synonyms
Publications