NO10G02930, NO10G02930 (gene) Nannochloropsis oceanica

Overview
NameNO10G02930
Unique NameNO10G02930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1612
Alignment locationchr10:812807..814418 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:812807..814418 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G02930 vs. NCBI_GenBank
Match: EWM25500.1 (hypothetical protein Naga_100032g32 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 1.100e-16
Identity = 83/168 (49.40%), Postives = 98/168 (58.33%), Query Frame = 0 
Query:  165 KHGKKKMLKKQGIPLLAGXXXXXXXXXXXXXXXXXXXXXXIRKLFRGNTGFEEGFKASSITTEGNWG------DEGLLHRPGQAKPHMTIAGAFARLAEDKLNNLADVSPFPLTDDAPPRRQTKKFKVVVPAFYHGKEFHPPTEPIPLVMGEHHFIHPEMAASLNLVP 327
            KHG +K+LKK GIPLLA XXXXXXXXXXXXXXXXXXX     K    N          S T  G+W       D+G+     Q  PH+ I   + RL++ K   LA V P      APP RQ  KF+ VVPA YHG+ FHP   P+PLV+GEH F+HP+MAA  N  P
Sbjct:  412 KHGNEKVLKKPGIPLLARXXXXXXXXXXXXXXXXXXXMATDYK----NIDRTAQSARESSTLYGSWNSETGNTDKGVFTHVKQI-PHLNIPEIWERLSKAKGERLAPVMPPGPIVHAPPARQPPKFRTVVPATYHGQSFHPSPRPMPLVVGEHAFLHPKMAAHFNHAP 574
The following BLAST results are available for this feature:
BLAST of NO10G02930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25500.11.100e-1649.40hypothetical protein Naga_100032g32 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001164NSK001164Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02930.1NO10G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585806gene_3909Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g32gene4998Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02930.1NO10G02930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02930 ID=NO10G02930|Name=NO10G02930|organism=Nannochloropsis oceanica|type=gene|length=1612bp
ACTGCAGATATAATCACACCGCGGCGTGGAATTAAACGTGACGACGAGGA
GTAGCAACCAAGAAGAGCAACGAGGGATCGCACAACGAGGACGAGGACGA
TGAGTCTGTCCCGCACTGCACTCCTCGCCTTGTCCTGTGCCTTTTTGGTC
GCAGTCTGTGCGGATGTCGCGAATATGCAGTCAAACGTGCAAATTCATGG
CTCGAGGACAGTATCAGCGAAAAGGAATAGATATCGTTACTATGGGGCTA
GGAGCCTGCGCGCAACAGCGGAAGACAGGGTGAAAGGAGAAAAGGAGGGA
AAGATTGCAGGGCCAGGTGTCATGACCAAGGCAACTATGGCGGACGGACA
TCACGATATATCGGTATTAGCAGGAGCACGACCAGTGGGAATAGCAACAG
GCGATAAGGGTGCTGCTGGTTTGGGCCCTGCTCACGCAGTCGCCCAGGCC
AAACGCAATGGCAGACAGGCGAAAAAAGACAAGCTCAAAACGGAGCGTCA
CGTCAAAAAGGGGCTGAAGAAAGGAGTGCATAAAGTTGAAAAAATGGGGA
AGCATGCGGGCAGAAAATTCAAACGGGTGGGCAGAAAGTGGAAGCATGGC
AAGAAGAAAATGTTGAAGAAACAGGGCATCCCTCTTCTAGCCGGGGCCGG
GGCCGGGGCCGCCGCCGCCGCCGCCGCCGCAGCTGCAGCAGGAAGTGGAG
GAGGAACAGGAATAAGAAAATTATTCCGTGGGAACACGGGATTTGAGGAA
GGTTTCAAGGCCAGCAGTATCACGACCGAAGGAAATTGGGGAGACGAGGG
TCTACTCCATCGACCCGGCCAAGCAAAGCCGCACATGACCATCGCTGGTG
CTTTTGCCCGTCTCGCCGAAGACAAACTCAACAACCTCGCGGATGTCTCA
CCTTTCCCTTTAACGGATGACGCGCCTCCCCGTCGTCAGACCAAAAAATT
TAAGGTTGTCGTTCCTGCCTTCTACCATGGGAAGGAGTTCCACCCCCCCA
CCGAACCGATTCCGCTTGTTATGGGCGAGCACCACTTTATTCATCCCGAG
ATGGCTGCGTCTTTAAATCTTGTCCCGACGAATTAAGAGGGTACACTGTA
GGATCAAGGTTGTTGCCCGGGACATCGACTTAGGTTGGAGGAGAAGTAGA
AGCAACAGCTCATGGAAGGCACGGCGTTGACGGGACGAAATAAAAAAAAG
GAGAGAGCAACAGGGGCTATGTGTCTGTCTGTTGGTGGCGCGGGTTTGGT
CACGAAGGAGATGTACAGACAGTTCGAAGACATGCTCTTCAACAGTAAAA
CTCATCGCAAAGTTTTGAAGATAACTGAGCTCATTCACAAAGGTAAGAAC
CAGCCGGCCACGTCCCTCCACCGAATTTATAAGCAGTCAAGCCGGATCAA
TGTCTTTTTGCGCCCAAGAAGCAGCACATTTCTTCATGGATGATTAGGCG
TTCAAGAAATTGTTGGATGGGTGGGTTGTGGAGCGGGAGTTTGGACGTCA
GGGAGGGTTGAGGAAATACATAAAATGAAAGGCAGGAGTATGATAGAGCG
AAGGCCCCAAAGACTCAAGGTGGGAAGAGAAAAAAATAATACCTAAAAAT
TTAATTTGAGAG
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protein sequence of NO10G02930.1

>NO10G02930.1-protein ID=NO10G02930.1-protein|Name=NO10G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MSLSRTALLALSCAFLVAVCADVANMQSNVQIHGSRTVSAKRNRYRYYGA
RSLRATAEDRVKGEKEGKIAGPGVMTKATMADGHHDISVLAGARPVGIAT
GDKGAAGLGPAHAVAQAKRNGRQAKKDKLKTERHVKKGLKKGVHKVEKMG
KHAGRKFKRVGRKWKHGKKKMLKKQGIPLLAGAGAGAAAAAAAAAAAGSG
GGTGIRKLFRGNTGFEEGFKASSITTEGNWGDEGLLHRPGQAKPHMTIAG
AFARLAEDKLNNLADVSPFPLTDDAPPRRQTKKFKVVVPAFYHGKEFHPP
TEPIPLVMGEHHFIHPEMAASLNLVPTN*
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Synonyms
Publications