NO10G02880, NO10G02880 (gene) Nannochloropsis oceanica

Overview
NameNO10G02880
Unique NameNO10G02880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2609
Alignment locationchr10:787957..790565 +

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Properties
Property NameValue
DescriptionE3 ubiquitin ligase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:787957..790565 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO10G02880 vs. NCBI_GenBank
Match: EWM25515.1 (e3 ubiquitin ligase [Nannochloropsis gaditana])

HSP 1 Score: 654.4 bits (1687), Expect = 3.000e-184
Identity = 339/452 (75.00%), Postives = 361/452 (79.87%), Query Frame = 0
Query:   61 YRRPRPVSTLEASDGELLYGSASSGHGLAGHRQRGGRPQQEGQAGEDYDEEEREEEIGDVEWLLGTARGAPGSAEIDYTSFHRLGFRDKLRTLIWVHKARLLGHYKIFHHYIERCPCRPCSPLSRSYARSYSRALTGIGPRPCLRAPFSLLGLQGLFIRTPPSADAWRSAAGFLMEGGMSTREERGEDGDGSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGAGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAAEAEEASERIRWLVTSHLWICSQALGTLFHVVAAFGPLFLYFLDSSSPVRRSVLAACCGNLLVFIVRSSLTFLVVHSIMEAR--GEG---GREGRIKRLKRGLSRNSLSKLKRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSPA 508
            YRR R    L ASDGE+LYG   S  G+    QRG R Q +G   E   EEE EE +GDVEWLL T R  P  AEIDYT+FHRL FRDKLRTL+WVHK RLLG YKIFH+YIERCPCRPCSPLSRSYARSYSRALT IGPRPCLRAP SLLGLQGLFIRTPPSADAWRSAA  L  GG   R       D SNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFG+GGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHA EA++A+E+IR LV SHLW+CSQALGTLFHVVAAFGPLFLY L  +SPVRRSVLAACCGNLLVFIVRS+LTFLVVHSIMEAR   EG                   SL+KL+RR+SNAEDV+ AN CAICL  FQ+GE LL LPCHERHVYH  CIE W KKNRSCPLCM D++SPA
Sbjct:   23 YRRARAAPFLPASDGEMLYG---SDRGIGRAEQRGRRRQVQGVGNE--REEEDEEMVGDVEWLLDTRRWTPIGAEIDYTAFHRLSFRDKLRTLVWVHKTRLLGRYKIFHNYIERCPCRPCSPLSRSYARSYSRALTSIGPRPCLRAPLSLLGLQGLFIRTPPSADAWRSAADILDGGGGEGRRGGRGGDDRSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGSGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAPEADQAAEQIRRLVRSHLWMCSQALGTLFHVVAAFGPLFLYMLAPASPVRRSVLAACCGNLLVFIVRSALTFLVVHSIMEARNSNEGXXXXXXXXXXXXXXXXXXXSLAKLRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPA 469          
BLAST of NO10G02880 vs. NCBI_GenBank
Match: ORM39460.1 (ATP-dependent RNA helicase DEAH13 [Babesia sp. Xinjiang])

HSP 1 Score: 73.6 bits (179), Expect = 2.200e-9
Identity = 71/270 (26.30%), Postives = 112/270 (41.48%), Query Frame = 0
Query:  238 GMST-REERGEDGDGSNAYLVEIFRLQPYAAAAYLRALLYCWI-GGVMLQLEAAASFG--AGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAAEAEEASERIRWLVTSHLWICSQALGTLFHVVAAFGPLFLYFLDSSSPVRRSVLAACCGNLLVFIV---RSSLTFLVVHSIMEARGEGGREGRIKRLKRGLSRNSLSKLKRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCM 501
            G+ST    R          L++   L P  A  +++  ++C +    ML +   A  G      + Y+   W WL    VLQ+LQ P R  L   ++R    A  +E    +  L T  LW  S+ L    +   A G     F  S +PV +S        + VF V   R   TF + +             R++  K+   +    ++  R     + V+ + C ICL  F+  + L +L C+  H YH  CI+ WF ++ +CPLCM
Sbjct: 1090 GLSTYTSRRNSPRQPDTDLLMDFVILHPVRALIFVQGAIFCGVMMNAMLYIPDLAVKGIFKHSTSHYDSMVWWWLAFNKVLQMLQMPIRIFL-LYVLRSLRGATNQEIMYCMSVLTTCRLWRWSKRLTLTNYFWYALG-----FAASRNPVLKSKPWFNTMVIYVFAVIALRVMFTFTLFYYAFP-------PSRVRITKKPAPKIDFGRIPVRRYCDCENVSTSMCGICLDEFESEDRLRVLLCN--HGYHVACIDKWFARSNTCPLCM 1344          
BLAST of NO10G02880 vs. NCBI_GenBank
Match: XP_020163540.1 (E3 ubiquitin ligase BIG BROTHER-related-like [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 72.8 bits (177), Expect = 3.800e-9
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0
Query:  431 RGLSRNSLSKLKRRESNAEDVVNAN--QCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSP 507
            RG+S N+L+ L      AED  ++N  QC IC   F++GE+L+ LPC  +H YH +CI  W + N+ CP+C  +VS+P
Sbjct:  208 RGVSANTLASLPLVTYQAEDNQDSNMEQCVICRVEFEEGESLVALPC--KHSYHSDCINQWLQLNKVCPMCSAEVSTP 283          
BLAST of NO10G02880 vs. NCBI_GenBank
Match: XP_003574899.1 (E3 ubiquitin ligase BIG BROTHER-related isoform X1 [Brachypodium distachyon] >KQJ99295.1 hypothetical protein BRADI_3g42410v3 [Brachypodium distachyon])

HSP 1 Score: 72.4 bits (176), Expect = 4.900e-9
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0
Query:  431 RGLSRNSLSKLKRRESNAEDVVNAN--QCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSP 507
            RGLS ++L+ L      A+D  ++N  QC IC   F++GE+L+ LPC  +H YH ECI  W + N+ CP+C  +VS+P
Sbjct:  222 RGLSADTLASLPSVTYEAKDKQDSNTEQCVICRVEFEEGESLVALPC--KHSYHSECINQWLQLNKVCPMCSAEVSTP 297          
BLAST of NO10G02880 vs. NCBI_GenBank
Match: EJY79299.1 (Zinc finger, C3HC4 type domain-containing protein (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 72.4 bits (176), Expect = 4.900e-9
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0
Query:  453 NANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVS 505
            +   CAICLG  Q+ E +  LPC  RHVYH +CI  WFK+N SCPLC  +VS
Sbjct:  250 DTTDCAICLGDLQENEIVTPLPCDMRHVYHSDCIIDWFKQNNSCPLCKAEVS 301          
BLAST of NO10G02880 vs. NCBI_GenBank
Match: XP_010235389.1 (E3 ubiquitin ligase BIG BROTHER-related isoform X2 [Brachypodium distachyon] >KQJ99294.1 hypothetical protein BRADI_3g42410v3 [Brachypodium distachyon])

HSP 1 Score: 72.4 bits (176), Expect = 4.900e-9
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0
Query:  431 RGLSRNSLSKLKRRESNAEDVVNAN--QCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSP 507
            RGLS ++L+ L      A+D  ++N  QC IC   F++GE+L+ LPC  +H YH ECI  W + N+ CP+C  +VS+P
Sbjct:  221 RGLSADTLASLPSVTYEAKDKQDSNTEQCVICRVEFEEGESLVALPC--KHSYHSECINQWLQLNKVCPMCSAEVSTP 296          
BLAST of NO10G02880 vs. NCBI_GenBank
Match: PAN13543.1 (hypothetical protein PAHAL_B03635 [Panicum hallii])

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 0
Query:  431 RGLSRNSLSKL---KRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSS 506
            RGLS ++L+ L   K +  N +D  NA QC IC   F++GE+L+ LPC  +H YH ECI  W + N+ CP+C  +VS+
Sbjct:  249 RGLSADTLASLPSVKYKTQNVQD-GNAEQCVICRVEFEEGESLIALPC--KHSYHPECINQWLQINKVCPMCSAEVST 323          
BLAST of NO10G02880 vs. NCBI_GenBank
Match: PUZ71711.1 (hypothetical protein GQ55_2G335700 [Panicum hallii var. hallii])

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 0
Query:  431 RGLSRNSLSKL---KRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSS 506
            RGLS ++L+ L   K +  N +D  NA QC IC   F++GE+L+ LPC  +H YH ECI  W + N+ CP+C  +VS+
Sbjct:  249 RGLSADTLASLPSVKYKTQNVQD-GNAEQCVICRVEFEEGESLIALPC--KHSYHPECINQWLQINKVCPMCSAEVST 323          
BLAST of NO10G02880 vs. NCBI_GenBank
Match: PIA19624.1 (hypothetical protein COEREDRAFT_78942 [Coemansia reversa NRRL 1564])

HSP 1 Score: 70.5 bits (171), Expect = 1.900e-8
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 0
Query:  434 SRNSLSKLKRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDV 504
            S  S+++L RR+ +AE+     +C IC+  +  GE ++ LPC  +H YH ECI+ W K N +CP+C T +
Sbjct:  328 SEESINQLPRRKISAEEAAAKAECGICMDEYNPGEEVMTLPC--KHFYHIECIDHWLKMNGTCPICRTRI 395          
BLAST of NO10G02880 vs. NCBI_GenBank
Match: OLQ10022.1 (E3 ubiquitin-protein ligase RNF38 [Symbiodinium microadriaticum])

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-8
Identity = 57/225 (25.33%), Postives = 99/225 (44.00%), Query Frame = 0
Query:  307 WLCLQLVLQLLQAPARCKLWRRLVRVSHAAEAEEASERIRWLVTSHLWICSQALGTLFHVVAAFGPLFLYFLDSSSPVRRSVLAACCGNLLVF-IVRSSLTFLVVHSIMEARGEGGREGRIKRLKRGLSRNSLSKLKRRESNAEDVV-----------------------NANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSPA 508
            WL L  +LQLLQAP R   + R+  +       +  E +R L  +  W  S+A+    +     G ++L  L+SS       L      ++VF  ++  +T +V +     RGE   + +     RG  +  +  L   E  +E+                           + CA+CL  F++ + +  LPC+  HV+H  CI+ W ++N+ CPLC+ +V +P+
Sbjct:  131 WLALHCILQLLQAPVRMVFYYRVREIQRL--NGDLQECVRQLTQAPAWRTSKAVSITSYAWFVLGVVWL--LNSSYCEPCPWLYRLSLMVVVFSFLKLLITLVVFNRCFPVRGEASTQHK----PRGAPQELIDALPVHEFGSEEPAGQEDDCSAATAEIHXXXXAGERRRESSCAVCLCDFERKDLVRRLPCN--HVFHQSCIDRWLRRNQVCPLCLREVKAPS 345          
The following BLAST results are available for this feature:
BLAST of NO10G02880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25515.13.000e-18475.00e3 ubiquitin ligase [Nannochloropsis gaditana][more]
ORM39460.12.200e-926.30ATP-dependent RNA helicase DEAH13 [Babesia sp. Xin... [more]
XP_020163540.13.800e-943.59E3 ubiquitin ligase BIG BROTHER-related-like [Aegi... [more]
XP_003574899.14.900e-943.59E3 ubiquitin ligase BIG BROTHER-related isoform X1... [more]
EJY79299.14.900e-955.77Zinc finger, C3HC4 type domain-containing protein ... [more]
XP_010235389.14.900e-943.59E3 ubiquitin ligase BIG BROTHER-related isoform X2... [more]
PAN13543.11.400e-844.87hypothetical protein PAHAL_B03635 [Panicum hallii][more]
PUZ71711.11.400e-844.87hypothetical protein GQ55_2G335700 [Panicum hallii... [more]
PIA19624.11.900e-840.00hypothetical protein COEREDRAFT_78942 [Coemansia r... [more]
OLQ10022.12.400e-825.33E3 ubiquitin-protein ligase RNF38 [Symbiodinium mi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001157NSK001157Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02880.1NO10G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585827gene_3916Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g37gene5002Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02880.1NO10G02880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02880 ID=NO10G02880|Name=NO10G02880|organism=Nannochloropsis oceanica|type=gene|length=2609bp
GGTCAAGCTCAGGGGGGGTGGCGAAGGGCCGGAACGCTTATCGCCCTCTG
TGTGGGCTTTGCCTTTGCAATTGAAGTGCGTCGTCCCAACTTTGATCTTC
TCACCGCTTGCGCGACAGCCAAATCCACACTCTAATATTCGGCCGCTCCA
TGTCTGTAATTGGCGCGTGTTCGGGGGTTGGCCCGTGTTTTAGCGGATTC
CTGCTAGTGCTTCTGATTTCTAACGAACAGCTCATCCCCTATCATCTACA
ACAGAACAGTGACATGGCGGACGACGATCACGGGGGCGCCAGCAGCAGCA
GCGACACCACCACGCCCATGCGACGCTTGTATCGACGGCCACGACCTGTG
TCTACACTGGAGGCGTCGGATGGAGAGTTGCTCTACGGGAGCGCGAGCAG
CGGACATGGCCTGGCTGGGCATCGACAGAGAGGGGGGCGACCCCAACAGG
AAGGCCAGGCAGGGGAGGACTACGACGAGGAGGAGAGGGAGGAAGAAATT
GGAGATGTTGAATGGCTGCTGGGGACCGCGCGAGGCGCGCCTGGCAGTGC
AGAGATTGATTATACGAGCTTCCATCGACTAGGCTTTCGGGATAAGgtga
gtttgggagaaaggtttgatggaaggaggtgaaagtggaggcagtgagag
gagaggactcgttaagggtgccatatcaatgcgatttgagactgacactc
gtaggatgcatcttaacatatgcgtgcgtgtgtacaagcgtgtgtgggta
gtgccttgggcgcgagcacccggccgttccctttttcgtccctccctctc
ctgtagcgagcagcgaatctatcggccttgattgcccgaatcggaccttc
cacgtattgaatctttttgattctgctcccgtgttgtcttttcgtgcttg
tgagagatgaagaatcgggtccttttccttcctttcttctagaacctctc
tcccatcatgtatgcattcacaccttcatttccccgtccatccccgcgct
agatctacacgcccttgctccctatcaacaagctactttcatcatattac
actcactgccccttcctttctacttcccttattccctcctacagCTCCGC
ACCCTCATCTGGGTTCATAAAGCTCGTCTTTTGGGTCACTATAAAATCTT
CCACCATTACATCGAACGCTGCCCCTGCCGTCCCTGCTCGCCTCTCTCTC
GCTCCTACGCCCGCTCTTACTCTCGTGCGTTAACGGGAATTGGTCCTCGC
CCCTGTTTGCGTGCGCCTTTCTCTCTGCTTGGCTTGCAGGGACTTTTCAT
TCGCACCCCACCCTCCGCCGATGCATGGCGCTCGGCCGCCGGTTTCCTGA
TGGAAGGAGGGATGAGCACAAGGGAGGAAAGGGGGGAGGACGGGGATGGT
TCCAATGCTTACTTGGTGGAGATCTTTCGGTTGCAGCCATACGCTGCTGC
TGCCTATCTAAGGGCTCTGTTGTATTGCTGGATCGGAGGGGTGATGCTTC
AGCTAGAGGCAGCGGCAAGTTTCGGCGCGGGGGGGGATACGTTCTATGAG
AGAACAGCGTGGCATTGGCTGTGTCTGCAGTTGGTGCTGCAGCTGCTGCA
GGCCCCTGCGAGGTGCAAGTTGTGGAGACGGCTCGTCCGGGTCAGTCACG
CGGCGGAGGCGGAGGAGGCAAGTGAGCGGATCCGATGGTTGGTGACGAGT
CATTTGTGGATTTGCAGTCAAGCGCTTGGGACGTTGTTTCATGTGGTGGC
GGCATTTGGGCCCTTGTTTTTGTATTTTTTGGACAGCTCCAGCCCTGTCC
GGCGGAGTGTGTTGGCTGCGTGTTGTGGAAATTTACTTGTGTTTATTGTT
AGGTCTTCACTGACCTTCTTGGTGGTCCATTCCATCATGGAGGCGAGGGG
AGAGGGCGGGAGGGAGGGAAGGATCAAGAGGCTGAAGAGGGGGTTGTCAA
GGAATAGCTTGTCCAAGTTGAAGAGGAGGGAGAGCAACGCAGAGGATGTG
GTGAATGCGAACCAGTGCGCGATTTGCTTGGGGTCTTTTCAGCAGGGAGA
GAATCTGCTATTGCTGCCCTGTCATGAACGACATGTCTATCATTGTGAGT
GTATTGAGACGTGGTTCAAAAAGAACAGATCTTGTCCTCTGTGCATGACC
GATGTTTCTTCTCCTGCAGTGGCTGCAGCGCTGGCAGCAGCAGCAGCAGC
GACAAAGGAGAAGGAAGAAAAGGAGGGAAGGAGGGAAGACATGCATAGGG
AAATGCGGCAGGTGCTGCAGCAGCATGATATATGCAATTAGCAAGGGAGT
GAGAAACAGAAAAACCGATAGATCTACGGCAACAGGAAGAACGACTCAAT
GAGTGAAGACGAACGACCACACTTAAGAGTGGAAGACGAGAGAGGAAGTT
GATTTAAATTTTGGTGAGGGGAAGGCAGCCGCAGTTGCAATAGTAGAAGC
AATCCTTAACCATGCTTGTAAATGTTTGGAAGAGAAGGAGAGAATCCGCA
AGTCGAAGCTTATAGAAGATATTTTTTAAAGCTTAAAATGGACGAGATCC
TTGGGACATCGACGGAAATAGATCTTTGGAAGAAAAATCATATCGACGTG
CGTTAAAAC
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protein sequence of NO10G02880.1

>NO10G02880.1-protein ID=NO10G02880.1-protein|Name=NO10G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MSVIGACSGVGPCFSGFLLVLLISNEQLIPYHLQQNSDMADDDHGGASSS
SDTTTPMRRLYRRPRPVSTLEASDGELLYGSASSGHGLAGHRQRGGRPQQ
EGQAGEDYDEEEREEEIGDVEWLLGTARGAPGSAEIDYTSFHRLGFRDKL
RTLIWVHKARLLGHYKIFHHYIERCPCRPCSPLSRSYARSYSRALTGIGP
RPCLRAPFSLLGLQGLFIRTPPSADAWRSAAGFLMEGGMSTREERGEDGD
GSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGAGGDTFY
ERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAAEAEEASERIRWLVT
SHLWICSQALGTLFHVVAAFGPLFLYFLDSSSPVRRSVLAACCGNLLVFI
VRSSLTFLVVHSIMEARGEGGREGRIKRLKRGLSRNSLSKLKRRESNAED
VVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCM
TDVSSPAVAAALAAAAAATKEKEEKEGRREDMHREMRQVLQQHDICN*
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Synonyms
Publications