NO10G02880, NO10G02880 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G02880 vs. NCBI_GenBank
Match: EWM25515.1 (e3 ubiquitin ligase [Nannochloropsis gaditana]) HSP 1 Score: 654.4 bits (1687), Expect = 3.000e-184 Identity = 339/452 (75.00%), Postives = 361/452 (79.87%), Query Frame = 0 Query: 61 YRRPRPVSTLEASDGELLYGSASSGHGLAGHRQRGGRPQQEGQAGEDYDEEEREEEIGDVEWLLGTARGAPGSAEIDYTSFHRLGFRDKLRTLIWVHKARLLGHYKIFHHYIERCPCRPCSPLSRSYARSYSRALTGIGPRPCLRAPFSLLGLQGLFIRTPPSADAWRSAAGFLMEGGMSTREERGEDGDGSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGAGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAAEAEEASERIRWLVTSHLWICSQALGTLFHVVAAFGPLFLYFLDSSSPVRRSVLAACCGNLLVFIVRSSLTFLVVHSIMEAR--GEG---GREGRIKRLKRGLSRNSLSKLKRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSPA 508 YRR R L ASDGE+LYG S G+ QRG R Q +G E EEE EE +GDVEWLL T R P AEIDYT+FHRL FRDKLRTL+WVHK RLLG YKIFH+YIERCPCRPCSPLSRSYARSYSRALT IGPRPCLRAP SLLGLQGLFIRTPPSADAWRSAA L GG R D SNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFG+GGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHA EA++A+E+IR LV SHLW+CSQALGTLFHVVAAFGPLFLY L +SPVRRSVLAACCGNLLVFIVRS+LTFLVVHSIMEAR EG SL+KL+RR+SNAEDV+ AN CAICL FQ+GE LL LPCHERHVYH CIE W KKNRSCPLCM D++SPA Sbjct: 23 YRRARAAPFLPASDGEMLYG---SDRGIGRAEQRGRRRQVQGVGNE--REEEDEEMVGDVEWLLDTRRWTPIGAEIDYTAFHRLSFRDKLRTLVWVHKTRLLGRYKIFHNYIERCPCRPCSPLSRSYARSYSRALTSIGPRPCLRAPLSLLGLQGLFIRTPPSADAWRSAADILDGGGGEGRRGGRGGDDRSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGSGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAPEADQAAEQIRRLVRSHLWMCSQALGTLFHVVAAFGPLFLYMLAPASPVRRSVLAACCGNLLVFIVRSALTFLVVHSIMEARNSNEGXXXXXXXXXXXXXXXXXXXSLAKLRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPA 469
BLAST of NO10G02880 vs. NCBI_GenBank
Match: ORM39460.1 (ATP-dependent RNA helicase DEAH13 [Babesia sp. Xinjiang]) HSP 1 Score: 73.6 bits (179), Expect = 2.200e-9 Identity = 71/270 (26.30%), Postives = 112/270 (41.48%), Query Frame = 0 Query: 238 GMST-REERGEDGDGSNAYLVEIFRLQPYAAAAYLRALLYCWI-GGVMLQLEAAASFG--AGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAAEAEEASERIRWLVTSHLWICSQALGTLFHVVAAFGPLFLYFLDSSSPVRRSVLAACCGNLLVFIV---RSSLTFLVVHSIMEARGEGGREGRIKRLKRGLSRNSLSKLKRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCM 501 G+ST R L++ L P A +++ ++C + ML + A G + Y+ W WL VLQ+LQ P R L ++R A +E + L T LW S+ L + A G F S +PV +S + VF V R TF + + R++ K+ + ++ R + V+ + C ICL F+ + L +L C+ H YH CI+ WF ++ +CPLCM Sbjct: 1090 GLSTYTSRRNSPRQPDTDLLMDFVILHPVRALIFVQGAIFCGVMMNAMLYIPDLAVKGIFKHSTSHYDSMVWWWLAFNKVLQMLQMPIRIFL-LYVLRSLRGATNQEIMYCMSVLTTCRLWRWSKRLTLTNYFWYALG-----FAASRNPVLKSKPWFNTMVIYVFAVIALRVMFTFTLFYYAFP-------PSRVRITKKPAPKIDFGRIPVRRYCDCENVSTSMCGICLDEFESEDRLRVLLCN--HGYHVACIDKWFARSNTCPLCM 1344
BLAST of NO10G02880 vs. NCBI_GenBank
Match: XP_020163540.1 (E3 ubiquitin ligase BIG BROTHER-related-like [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 72.8 bits (177), Expect = 3.800e-9 Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 431 RGLSRNSLSKLKRRESNAEDVVNAN--QCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSP 507 RG+S N+L+ L AED ++N QC IC F++GE+L+ LPC +H YH +CI W + N+ CP+C +VS+P Sbjct: 208 RGVSANTLASLPLVTYQAEDNQDSNMEQCVICRVEFEEGESLVALPC--KHSYHSDCINQWLQLNKVCPMCSAEVSTP 283
BLAST of NO10G02880 vs. NCBI_GenBank
Match: XP_003574899.1 (E3 ubiquitin ligase BIG BROTHER-related isoform X1 [Brachypodium distachyon] >KQJ99295.1 hypothetical protein BRADI_3g42410v3 [Brachypodium distachyon]) HSP 1 Score: 72.4 bits (176), Expect = 4.900e-9 Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 431 RGLSRNSLSKLKRRESNAEDVVNAN--QCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSP 507 RGLS ++L+ L A+D ++N QC IC F++GE+L+ LPC +H YH ECI W + N+ CP+C +VS+P Sbjct: 222 RGLSADTLASLPSVTYEAKDKQDSNTEQCVICRVEFEEGESLVALPC--KHSYHSECINQWLQLNKVCPMCSAEVSTP 297
BLAST of NO10G02880 vs. NCBI_GenBank
Match: EJY79299.1 (Zinc finger, C3HC4 type domain-containing protein (macronuclear) [Oxytricha trifallax]) HSP 1 Score: 72.4 bits (176), Expect = 4.900e-9 Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0 Query: 453 NANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVS 505 + CAICLG Q+ E + LPC RHVYH +CI WFK+N SCPLC +VS Sbjct: 250 DTTDCAICLGDLQENEIVTPLPCDMRHVYHSDCIIDWFKQNNSCPLCKAEVS 301
BLAST of NO10G02880 vs. NCBI_GenBank
Match: XP_010235389.1 (E3 ubiquitin ligase BIG BROTHER-related isoform X2 [Brachypodium distachyon] >KQJ99294.1 hypothetical protein BRADI_3g42410v3 [Brachypodium distachyon]) HSP 1 Score: 72.4 bits (176), Expect = 4.900e-9 Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 431 RGLSRNSLSKLKRRESNAEDVVNAN--QCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSP 507 RGLS ++L+ L A+D ++N QC IC F++GE+L+ LPC +H YH ECI W + N+ CP+C +VS+P Sbjct: 221 RGLSADTLASLPSVTYEAKDKQDSNTEQCVICRVEFEEGESLVALPC--KHSYHSECINQWLQLNKVCPMCSAEVSTP 296
BLAST of NO10G02880 vs. NCBI_GenBank
Match: PAN13543.1 (hypothetical protein PAHAL_B03635 [Panicum hallii]) HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8 Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 431 RGLSRNSLSKL---KRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSS 506 RGLS ++L+ L K + N +D NA QC IC F++GE+L+ LPC +H YH ECI W + N+ CP+C +VS+ Sbjct: 249 RGLSADTLASLPSVKYKTQNVQD-GNAEQCVICRVEFEEGESLIALPC--KHSYHPECINQWLQINKVCPMCSAEVST 323
BLAST of NO10G02880 vs. NCBI_GenBank
Match: PUZ71711.1 (hypothetical protein GQ55_2G335700 [Panicum hallii var. hallii]) HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8 Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 431 RGLSRNSLSKL---KRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSS 506 RGLS ++L+ L K + N +D NA QC IC F++GE+L+ LPC +H YH ECI W + N+ CP+C +VS+ Sbjct: 249 RGLSADTLASLPSVKYKTQNVQD-GNAEQCVICRVEFEEGESLIALPC--KHSYHPECINQWLQINKVCPMCSAEVST 323
BLAST of NO10G02880 vs. NCBI_GenBank
Match: PIA19624.1 (hypothetical protein COEREDRAFT_78942 [Coemansia reversa NRRL 1564]) HSP 1 Score: 70.5 bits (171), Expect = 1.900e-8 Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 0 Query: 434 SRNSLSKLKRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDV 504 S S+++L RR+ +AE+ +C IC+ + GE ++ LPC +H YH ECI+ W K N +CP+C T + Sbjct: 328 SEESINQLPRRKISAEEAAAKAECGICMDEYNPGEEVMTLPC--KHFYHIECIDHWLKMNGTCPICRTRI 395
BLAST of NO10G02880 vs. NCBI_GenBank
Match: OLQ10022.1 (E3 ubiquitin-protein ligase RNF38 [Symbiodinium microadriaticum]) HSP 1 Score: 70.1 bits (170), Expect = 2.400e-8 Identity = 57/225 (25.33%), Postives = 99/225 (44.00%), Query Frame = 0 Query: 307 WLCLQLVLQLLQAPARCKLWRRLVRVSHAAEAEEASERIRWLVTSHLWICSQALGTLFHVVAAFGPLFLYFLDSSSPVRRSVLAACCGNLLVF-IVRSSLTFLVVHSIMEARGEGGREGRIKRLKRGLSRNSLSKLKRRESNAEDVV-----------------------NANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSPA 508 WL L +LQLLQAP R + R+ + + E +R L + W S+A+ + G ++L L+SS L ++VF ++ +T +V + RGE + + RG + + L E +E+ + CA+CL F++ + + LPC+ HV+H CI+ W ++N+ CPLC+ +V +P+ Sbjct: 131 WLALHCILQLLQAPVRMVFYYRVREIQRL--NGDLQECVRQLTQAPAWRTSKAVSITSYAWFVLGVVWL--LNSSYCEPCPWLYRLSLMVVVFSFLKLLITLVVFNRCFPVRGEASTQHK----PRGAPQELIDALPVHEFGSEEPAGQEDDCSAATAEIHXXXXAGERRRESSCAVCLCDFERKDLVRRLPCN--HVFHQSCIDRWLRRNQVCPLCLREVKAPS 345 The following BLAST results are available for this feature:
BLAST of NO10G02880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G02880 ID=NO10G02880|Name=NO10G02880|organism=Nannochloropsis oceanica|type=gene|length=2609bpback to top protein sequence of NO10G02880.1 >NO10G02880.1-protein ID=NO10G02880.1-protein|Name=NO10G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=548bpback to top Synonyms
Publications
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