NO10G02850, NO10G02850 (gene) Nannochloropsis oceanica

Overview
NameNO10G02850
Unique NameNO10G02850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5096
Alignment locationchr10:779102..784197 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein L4 domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:779102..784197 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR023574Ribosomal_L4_dom
IPR025755Ribos_L4_C_dom
IPR002136Ribosomal_L4/L1e
Homology
BLAST of NO10G02850 vs. NCBI_GenBank
Match: EWM25502.1 (Ribosomal protein L4 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 636.7 bits (1641), Expect = 4.600e-179
Identity = 357/385 (92.73%), Postives = 372/385 (96.62%), Query Frame = 0
Query:    1 MAAARPQVSVYNAEGAAVAEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQSVVRPAVTETVRLPRKKNPLKNLSAMVRLNPYVLIHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRAFYEVAVKDGEIKF 386
            MAAARPQVSVYN EGA+VAEVPLPAVLTAPIRPDVV FVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGH VDGVAEIPFVLD +F+K+DKTAQAVKVLG LGVGPELDKSKDSKKIR+GKGKMRNRRYVLRRGPLVIY+TGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWT+GAFE+LD+VFGTQTEKSQVKLDYVLPRAPMANADLARIINSEE+QSVVRPAVTETVRLPRKKNPLKNL+AMVR+NPYVL+HR     XXXXXXXXXXXXXXXXXXXXXXXXXXXX RAFYE A K+G+IKF
Sbjct:    1 MAAARPQVSVYNVEGASVAEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHR----RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAFYEQASKEGDIKF 381          
BLAST of NO10G02850 vs. NCBI_GenBank
Match: CCA18236.1 (hypothetical protein LOC100194262 [Albugo laibachii Nc14])

HSP 1 Score: 447.6 bits (1150), Expect = 3.900e-122
Identity = 226/339 (66.67%), Postives = 272/339 (80.24%), Query Frame = 0
Query:    1 MAAARPQVSVYNAEGAAV---AEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQSVVRPAVTETVRLPRKKNPLKNLSAMVRLNPYVLIHR 337
            +AA RP VSVY+ +   V   ++V LP V TAPIRPDVVKFV T + KN+RQPYAVS  AGHQ SAESWGTGRAV+RIPR+ GGGTQR+GQGAFGNMCRSGRMFAPT+IWR+WHRKIN+ Q+RYAVASALAASA+P+LV ARGHR++ +AEIP VLD     L KT+ AVK+L  +G   +++K KDSKKIR G+GK RNRRYV+RRGPL++Y     G+ KA RNI GVE AHV+RLNLLQLAPGGHLGRF IWT+ AFEKLD+++GT ++KS  K+DY LPR  M NA+L RIINS+EIQS++RP + E  R  +KKNPLKNL  MV+LNPY L+ R
Sbjct:    4 LAACRPVVSVYSIDADTVKVSSQVVLPTVFTAPIRPDVVKFVHTNMAKNNRQPYAVSRGAGHQHSAESWGTGRAVSRIPRIQGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRYAVASALAASALPSLVTARGHRIEKLAEIPCVLDDMVESLQKTSHAVKLLSKIGADEDIEKVKDSKKIRTGRGKSRNRRYVMRRGPLIVY-ASPNGLEKAFRNIPGVELAHVERLNLLQLAPGGHLGRFVIWTKTAFEKLDALYGTYSKKSSAKVDYTLPRHLMNNANLGRIINSDEIQSIIRPGIYEKHRRCQKKNPLKNLGVMVKLNPYTLVAR 341          
BLAST of NO10G02850 vs. NCBI_GenBank
Match: CBJ33281.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 443.4 bits (1139), Expect = 7.400e-121
Identity = 226/331 (68.28%), Postives = 263/331 (79.46%), Query Frame = 0
Query:    3 AARPQVSVYNAEGAAVAEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQSVVRPAVTETV--RLPRKKNPLKNLSAMVRLNPY 332
            +ARP VSV++ EG A     LPAV T PIRPDVV FV T + KNHRQPYAVS++AGHQTSAESWGTGRAV+RIPRV GGGTQR+GQGAFGNMCR GRMF+PTKIWRRWHR +N+ QKRYAVASALAA+AVPALVMARGHRV+ V E+P V+D++     KTA A+  L  LG   E++K+KDSKKIRAGKGKMRNRRYV+RRGPLVIY+   EG+ +A RN+ GVE A VDRLNLL LAPGGH+GRFC+WTQ AF+KLDS++GT TEKS VK ++ LPR  M N DL RIINS+EIQSVV     E    R+ RK NPLKN   M+ LNP+
Sbjct:    2 SARPVVSVFSKEGVAQESTTLPAVFTVPIRPDVVNFVHTNMAKNHRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVQGGGTQRAGQGAFGNMCRGGRMFSPTKIWRRWHRNVNVNQKRYAVASALAATAVPALVMARGHRVEEVPELPLVVDTSLETCSKTAAAMATLTALGAAAEVEKAKDSKKIRAGKGKMRNRRYVMRRGPLVIYDK-SEGISRAFRNLPGVETACVDRLNLLTLAPGGHIGRFCVWTQAAFDKLDSIYGTYTEKSDVKSNFQLPRHCMTNTDLNRIINSDEIQSVVNDPKPEAQVRRVARKVNPLKNRGVMLSLNPH 331          
BLAST of NO10G02850 vs. NCBI_GenBank
Match: CCI45903.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 442.2 bits (1136), Expect = 1.700e-120
Identity = 225/339 (66.37%), Postives = 270/339 (79.65%), Query Frame = 0
Query:    1 MAAARPQVSVYNAEGAAV---AEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQSVVRPAVTETVRLPRKKNPLKNLSAMVRLNPYVLIHR 337
            +AA RP VSVY+ +   V   ++V LP V TAPIRPDVV FV T + KN RQ YAVS  AGHQ SAESWGTGRAV+RIPRV GGGTQR+GQGAFGNMCRSGRMFAPT+IWR+WHRKIN+ Q+RYAVASALAASA+P+LV ARGHR++ ++EIP VLD     L KT+QAVK+L  +G   +++K KDSKKIR G+GK RNRRYV+RRGPL++Y     G+ KA RNI GVE AHV+RLNLLQLAPGGHLGRF IWT+ AFEKLD+++GT ++KS +K+DY LPR  M NA+L RIINS+EIQS+VRP +    R  +KKNPLKNL  MV+LNPY L+ R
Sbjct:    4 LAACRPVVSVYSIDADTVKVSSQVVLPTVFTAPIRPDVVNFVHTNMAKNKRQAYAVSRGAGHQHSAESWGTGRAVSRIPRVQGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRYAVASALAASALPSLVTARGHRIEKLSEIPCVLDDMVESLQKTSQAVKLLAKIGADEDIEKVKDSKKIRTGRGKSRNRRYVMRRGPLIVY-ASPNGLEKAFRNIPGVEVAHVERLNLLQLAPGGHLGRFVIWTKTAFEKLDTLYGTYSKKSNMKVDYTLPRHLMNNANLGRIINSDEIQSIVRPGIYHKHRRCQKKNPLKNLGVMVKLNPYTLVAR 341          
BLAST of NO10G02850 vs. NCBI_GenBank
Match: OQR96947.1 (hypothetical protein ACHHYP_12901 [Achlya hypogyna])

HSP 1 Score: 439.5 bits (1129), Expect = 1.100e-119
Identity = 224/339 (66.08%), Postives = 271/339 (79.94%), Query Frame = 0
Query:    1 MAAARPQVSVYN-AEGA--AVAEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQSVVRPAVTETVRLPRKKNPLKNLSAMVRLNPYVLIHR 337
            MAAARP VSV + AE A   V+++ LPAVLTAPIRPDVV FV T +NKN+RQ YAVS KAGHQ SAESWGTGRAVARIPR+ GGGTQR+GQGAFGNMCRSGRMFAPT+IWR+WHRKIN+ Q+R+AVASALAASAVP+LV+ARGHR++ V+EIP VLD +     KT+ AVK+L  +G   +++K KDSKKIR G+GK RNRRY L++GPL +Y     G+ KA RNI GVE   V+RLNLL LAPGGH+GRF +WT+ AFE+LD+++GT T+KS VK +Y LPR  M NA+L R+INS+EIQSVVR  + +  R   KKNPLKNL AMV+LNPY L+ R
Sbjct:  959 MAAARPVVSVLSVAEDATKVVSQIALPAVLTAPIRPDVVTFVHTNMNKNNRQAYAVSRKAGHQHSAESWGTGRAVARIPRISGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRFAVASALAASAVPSLVLARGHRIEQVSEIPLVLDDSVESTQKTSAAVKILAKIGAAADVEKVKDSKKIRTGRGKSRNRRYSLKKGPLFVY-AHANGIEKAFRNIPGVELVPVERLNLLSLAPGGHVGRFIVWTKSAFEQLDTIYGTYTKKSAVKSNYTLPRHVMTNANLGRLINSDEIQSVVRAGIYKNTRRAHKKNPLKNLGAMVKLNPYTLVAR 1296          
BLAST of NO10G02850 vs. NCBI_GenBank
Match: XP_008615279.1 (50S ribosomal protein L4e [Saprolegnia diclina VS20] >EQC31438.1 50S ribosomal protein L4e [Saprolegnia diclina VS20])

HSP 1 Score: 438.7 bits (1127), Expect = 1.800e-119
Identity = 221/339 (65.19%), Postives = 269/339 (79.35%), Query Frame = 0
Query:    1 MAAARPQVSVYNAEGAA---VAEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQSVVRPAVTETVRLPRKKNPLKNLSAMVRLNPYVLIHR 337
            MAAARP VSV +    A   V+++ LPAVLTAPIRPDVV FV T +NKN+RQ YAVS KAGHQ SAESWGTGRAVARIPR+ GGGTQR+GQGAFGNMCRSGRMFAPT+IWR+WHRKIN+ Q+R+AVASALAASAVP+LV+ARGHR++ V+EIP VLD +     KTA A+K+L  +G   +++K KDSKKIR G+GK RNRRY L++GPL +Y     G+ KA RNI G+E   V+RLNLL LAPGGH+GRF +WT+ AFE+LD+++GT T+KS VK DY LPR  M NA+L R+INS+EIQSV+R  + +  R   KKNPLKNL AMV+LNPY L+ R
Sbjct:    1 MAAARPVVSVLSIADEAVKVVSQIALPAVLTAPIRPDVVTFVHTQMNKNNRQAYAVSRKAGHQHSAESWGTGRAVARIPRISGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRFAVASALAASAVPSLVLARGHRIEQVSEIPLVLDDSVESTQKTAAAMKILAKIGAHADVEKVKDSKKIRTGRGKSRNRRYSLKKGPLFVY-AHANGIEKAFRNIPGIELVPVERLNLLSLAPGGHVGRFIVWTKSAFEQLDTIYGTYTKKSAVKSDYTLPRHVMTNANLGRLINSDEIQSVIRAGIYKNTRRAHKKNPLKNLGAMVKLNPYTLVAR 338          
BLAST of NO10G02850 vs. NCBI_GenBank
Match: XP_012196223.1 (hypothetical protein SPRG_02287 [Saprolegnia parasitica CBS 223.65] >KDO33479.1 hypothetical protein SPRG_02287 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 438.7 bits (1127), Expect = 1.800e-119
Identity = 220/339 (64.90%), Postives = 268/339 (79.06%), Query Frame = 0
Query:    1 MAAARPQVSVYNAEGAAV---AEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQSVVRPAVTETVRLPRKKNPLKNLSAMVRLNPYVLIHR 337
            MAAARP VSV +    AV   +++ LPAV TAPIRPDVV FV T +NKN+RQ YAVS KAGHQ SAESWGTGRAVARIPR+ GGGTQR+GQGAFGNMCRSGRMFAPT+IWR+WHRKIN+ Q+R+AVASALAASAVP+LV+ARGHR++ V+EIP VLD +     KT+ AVK+L  +G   +++K KDSKKIR G+GK RNRRY +++GPL +Y     G+ KA RNI G+E   V+RLNLL LAPGGH+GRF +WT+ AFE+LDS++GT T+KS VK DY LPR  M NA+L R+INS+EIQSV+R  + +  R   KKNPLKNL AMV+LNPY L+ R
Sbjct:  165 MAAARPVVSVLSVADEAVKVLSQIALPAVFTAPIRPDVVTFVHTNMNKNNRQAYAVSRKAGHQHSAESWGTGRAVARIPRISGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRFAVASALAASAVPSLVLARGHRIEQVSEIPLVLDDSVESTQKTSAAVKILAKIGAHADVEKVKDSKKIRTGRGKSRNRRYSMKKGPLFVY-AHANGIEKAFRNIPGIELVPVERLNLLSLAPGGHVGRFIVWTKSAFEQLDSIYGTYTKKSAVKSDYTLPRHVMTNANLGRLINSDEIQSVIRAGIYKNTRRAHKKNPLKNLGAMVKLNPYTLVAR 502          
BLAST of NO10G02850 vs. NCBI_GenBank
Match: OVA18185.1 (Ribosomal protein L4/L1e [Macleaya cordata])

HSP 1 Score: 438.3 bits (1126), Expect = 2.400e-119
Identity = 219/334 (65.57%), Postives = 267/334 (79.94%), Query Frame = 0
Query:    2 AAARPQVSVYNAEGAAVAE----VPLPAVLTAPIRPDVVKFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQSVVRPAVTETVRLPRKKNPLKNLSAMVRLNPY 332
            AAARP V+V+  +G    +    +PLP V+ A IRPD+V FV   ++KNHRQPYAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPT+IWRRWHRKIN+ QKRYAV SALAASAVP+LV+ARGHRV+ V EIP V+  +   ++KT+ A+K L  +G  P+ +K+KDS  IR GKGKMRNRRY+ R+GPL++Y T    +VKA RNI GVE A+V+RLNLL+LAPGGHLGRF IWT+ AFEKLDSV+G+  ++S+ K  YVLPR+ M NADLARIINS+E+QSVVRP   ++ R P KKNPLKNL+ ++RLNPY
Sbjct:    4 AAARPLVTVHALDGDMATDGGNTLPLPDVMKASIRPDIVNFVHANMSKNHRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSALAASAVPSLVLARGHRVESVPEIPLVVGDSAEGVEKTSAAIKFLKQVGAYPDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFIIWTKSAFEKLDSVYGSFEKQSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKKDSKRAPMKKNPLKNLNTLLRLNPY 337          
BLAST of NO10G02850 vs. NCBI_GenBank
Match: GAX99743.1 (60S ribosomal protein L4 [Pythium insidiosum])

HSP 1 Score: 438.3 bits (1126), Expect = 2.400e-119
Identity = 226/339 (66.67%), Postives = 266/339 (78.47%), Query Frame = 0
Query:    1 MAAARPQVSVYNAEG---AAVAEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQSVVRPAVTETVRLPRKKNPLKNLSAMVRLNPYVLIHR 337
            +AA+RP VSV + EG   A V +V LPAV TAPIRPDVV FV T + KN+RQ Y VS +AGHQ SAESWGTGRAV+RIPR+ GGGT RSGQGAFGNMCR GRMFAPT+IWRRWHRKIN+ Q+RYAVASALAASAVPALV ARGHR++ VAE+P VLD +   + KT+QAVKVL  +G   +++K K+SKK+R G+GK RNRRY  RRGPL++Y     G  KA RNI GVE A+V+RLNLLQLAPGGHLGRF IWT+ AFEKLDS++GT ++KS  K DY LPR  M NA+L R+INS+EIQSVVR       R  +KKNPLKNL AMV+LNPY L+ R
Sbjct:    4 LAASRPVVSVLSVEGETSAVVGQVVLPAVFTAPIRPDVVNFVHTNMAKNNRQAYGVSRRAGHQHSAESWGTGRAVSRIPRIAGGGTARSGQGAFGNMCRGGRMFAPTRIWRRWHRKINVNQRRYAVASALAASAVPALVTARGHRIEKVAEVPLVLDDSVESILKTSQAVKVLAKIGADADVEKVKESKKVRTGRGKSRNRRYTTRRGPLIVY-ANANGAEKAFRNIPGVELANVERLNLLQLAPGGHLGRFIIWTKSAFEKLDSIYGTYSKKSAEKNDYSLPRHIMNNANLGRLINSDEIQSVVRAGKYSNYRRHQKKNPLKNLGAMVKLNPYSLVAR 341          
BLAST of NO10G02850 vs. NCBI_GenBank
Match: AAX48834.1 (L4/L1 [Suberites domuncula])

HSP 1 Score: 438.0 bits (1125), Expect = 3.100e-119
Identity = 216/328 (65.85%), Postives = 262/328 (79.88%), Query Frame = 0
Query:    4 ARPQVSVYNAEGAAVAEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIPFVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRYVLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQSVVRPAVTETVRLPRKKNPLKNLSAMVRLNPY 332
            ARP V+V++ EG  VA+  LPAV  APIR DV++FV T + KN RQPYAVS KAGHQTSAESWGTGRAVARIPRV GGGT RSGQ AFGNMCR GRMFAPTK WRRWHR+IN  Q+RYA+ SALAA+A+PALV ARGHR+D + E+P V+D+   KL KT  A+K+L  L   P++ KSKDSKK+R GKGKMRNRRYV R+GPLVIYN  ++G+ +A RN+ GVE   VDR+NLL LAPGGH+GRFCIW++GAFEKLD+++GT  +KS +K++Y LPR  M   DLAR+INS+EIQ VVRP  + T R  +KKNPLKNL+ M+RLNP+
Sbjct:    2 ARPLVTVFSDEGKDVAQTTLPAVFKAPIRTDVIQFVHTNMRKNKRQPYAVSTKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWHRRINQNQRRYAMCSALAATALPALVTARGHRIDNIGEVPLVVDNAIEKLTKTKDAIKLLKALNAYPDVQKSKDSKKVRPGKGKMRNRRYVQRKGPLVIYNE-DQGITRAFRNLPGVELLKVDRMNLLLLAPGGHIGRFCIWSRGAFEKLDALYGTWKKKSTMKVNYNLPRPKMIQTDLARLINSDEIQKVVRPIRSNTKRFSQKKNPLKNLNVMLRLNPH 328          
The following BLAST results are available for this feature:
BLAST of NO10G02850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25502.14.600e-17992.73Ribosomal protein L4 domain protein [Nannochlorops... [more]
CCA18236.13.900e-12266.67hypothetical protein LOC100194262 [Albugo laibachi... [more]
CBJ33281.17.400e-12168.28conserved unknown protein [Ectocarpus siliculosus][more]
CCI45903.11.700e-12066.37unnamed protein product [Albugo candida][more]
OQR96947.11.100e-11966.08hypothetical protein ACHHYP_12901 [Achlya hypogyna... [more]
XP_008615279.11.800e-11965.1950S ribosomal protein L4e [Saprolegnia diclina VS2... [more]
XP_012196223.11.800e-11964.90hypothetical protein SPRG_02287 [Saprolegnia paras... [more]
OVA18185.12.400e-11965.57Ribosomal protein L4/L1e [Macleaya cordata][more]
GAX99743.12.400e-11966.6760S ribosomal protein L4 [Pythium insidiosum][more]
AAX48834.13.100e-11965.85L4/L1 [Suberites domuncula][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001154NSK001154Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02850.1NO10G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585843gene_3921Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g40gene5005Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02850.1NO10G02850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02850 ID=NO10G02850|Name=NO10G02850|organism=Nannochloropsis oceanica|type=gene|length=5096bp
AGCAAACATTGCATTCTTTCTTCCCTTTTATGACTGTATTTGTTTAGTTT
CTTTTCTTATGTGAGTTACGGTTTTTGACCGCTTACCAAAGCTTACTTCT
GTAGGTGCATTATGTACAATGTATGTGCACTGTCTATGTCGCCCCTCTCG
CATCCGAACCCCACTTCTTGGTTTCTGGTTTTCCACATCTTTCCTTTCTC
CTCCCTTCCTTCCTCCTCCTTCCCTCCCTCCCCCTATGCCACATAATTAT
AAATTGAAGGGTTCGTGTCATCCCTACACAAATAATCTCGCTCAATCAGA
CTCTCCACCCGCTTCTTAATATCCACGGGTGTGGCGGGGAACTTTAACTG
ACCGAACAACTCACTCAACAACAGATTATGGGACAGCTTCTTCCGCGCCT
TCATGATCCTGACAATAGCCGCATCAATCTGATACTGCCTATCCCTGTGG
ACGTCTGCGTGGGTCTTTTCATTCTCCTCCACCGTCTCCTTCAGCTGAAT
TGTATTTATTTTGATCCGGTAAAGCTTATGTTCAAATTTCAAATTCAAAC
TAAACGCATCGCTGTCCTCCACCTCTTTGCCCTTGGGCTCCTTGTGCAGC
ACTCGCTGATTCACTTTCCCGCACGCCAAACTCTGCAACGTACGTCTCAG
CTCCCCATCCTCCACCCGCGTGGCAGCCTTAATCTCCGCAAATGACACCC
CCCTTTCCCTTCCATCATTAAAACACAACAACACCAACATCTGGAAGAAC
GACACGCTCAACTCCTTCGTCCCTGCCAAAAAACGCGCCTTGACCACACA
CGTTCCCAGGGCATGCTGCCACATTAATCGACGCCCCTGGTACTTGCCGG
TGTAGTACTCCGAGAACCGCCTCATGTACGGCTCAAGCACCATCGGCACC
ACCACCTCGCTTAAGGGAAATGCCGGCCAATACCCCGTTGTCAACACGTG
CACACTCGTTTCGACCTCCCTCCCTCCCTCCCTCCCTCTTTCCCCCGACG
CCTCGCAATACTGGGTGTAATTCCCCATCAGCTCCCTCGATAGATCCATA
TCCTTGAACATCCCTTCCAATTTATTGGTGAATGTGGCCCCACACTCCGC
CTTCAACTTCGCAATCATGCTCTTTTCCAAGTCCGCACTCGCGCTCTTCC
CCAACAGGAGCCGCTTTGCCAAATCCTTCTTATAAAACGCCTCAAAAACA
TCCTTCGAGCCCACGAACCGAAACAGCACCATCGCCTTGTCCAGCAACCC
CTCCACCTCCACTTCGCTCACACCTTTCTCTCCCTTCAGCTTGACATCGA
TAAACTTTGCTAGCAATTCCGCCGGTCGGGTCGGTCGCACATTCACTGCA
AATTCAAACCCATCCTTCAAGGCATTGACGCACCCCACATTCGCCTTTCC
CCCTAGCGCAGACATCAAGACAATATCACATTTACCCTTGAATTCCAACA
AGTCTTCGACCATCTCTTTCTCCCGCGCCTCATCACTCACCAGTTCCGCC
CCCCTCCTTCGAATATAAGCATTGAACGCTGACTTCACTTCCCCCTCCCC
CCCCACCTTCCGACAACACAACAAATACATCCTCCGCAAATCCTCCACTC
GCTGCGCATCCATTAAACTGCCAAAGCCCTTTTCGATCAAAGTTGTTACG
TGGGGGGCCAGCAAACGGGCCTCAATCGCACTCACTAGCGCCTTTTTCGT
CCCCCCCTCCAGGTACGCCACACACGCCTCCCCAGCCTCCGCCAACCTCC
TTTCCACGTGGACCAAAAAAGCAACCACATCCAAACTCTCCATCTTTTTC
ACCCCCTCCGCGGCGAAATACCGCTCAGTGTCTTCCAGGAAAGCTTTTAA
AAACAAGGGTTTGTACAACCCCAGACTCCCCAACATCTTGACCAACGACC
TCAACAACGCCTGATTCACACTCTCTCCGTTCCGTTGCCGCTCAATCAAC
ACCAACAATCCCTTGATAATCTTAATCTCCAGTCCTCCTCCTCCTGTTGC
TCTTCCTCCAGCTGTTGCTGCTGCTGCTGCTGCTGCCACAGAGCCGGCGG
CACGTCCCTGTGCTGCTAATTGGAGCCTAAACAGTGTCAGACCCATCTCC
CAAATCGGCTGCAAACCCTGCATCTGCATTACGTAGCTCCGGTCCAGGTA
CAAAAAGATGCTTCGAATCGTCAGCATGTGCTCGCAATGGTCTTGCCAGA
CGTCATCCACCCTCTCCAAAAACAAAGCCTGATCCACCATCCCTCCCATC
CCTCCCCCCGTTGCCGCCAAGGCCCCCACAGCGCCCGCCACGTGCCGCAT
GCACTCTTCCTTCAAATGGTCATAGAGCCGACCACCCATCTTGTGCACGC
ACATGTCTTCGACGGCACGGTACAGCTCTTCATGGCTGATCGCCATTGCT
TCCTTGCTTTGCACCGCCACCACTGCCCGTCGCAGGGTCTCCCAGGTCGT
CTCCTCGAAGTTCTCCGGCAGCTTCGGCTGAACCTTGAAAGGACGGATGA
CCATCTTTTTCTTCTTCTTGTTGTTGTTGTTGCTATCTCCCGCTGCGCCG
CCATTGCCGCTGCTACTGGTCTGTGGTTTGTTCCCTGCGTTGGACAGCGC
AAAACCTCCCGCTGGCCGCGACGCAGCCGAGGCCGCCGCAGGGATCATCG
TTGGTGCTGCGGCCGGGATAAGTGCTGGTTATGAACCCGTCGCTGCCTGC
CCTGCCTTATCTGCCTCGTCTGCGCTTGTGTTTAGGTATAGGGTAATGGA
GATGACGATGTGTGAGATGGCACGGACGGGAAGGATGGAGGAAAAAGGGG
AAGGTCGTTGAGAGGCAAGATAGTTGTTGACGGTTGTTCAGGTTGTCTGA
TGTGCCTCATGTGCTTCACCACAGCCATCCAAGTCCCAAATGAGATGACA
TACCTTGTCTAAACGACTAAGCGAGGCACAACATCAAAGGCACTCTAGTT
TTTCTATCGATCGATCGCTTGCACTCCTTCGTTTCGCAACGTAGCTAACA
CAAGGTGTGGCACGCGGACGCCTCAATTCTTCGACATTCATGGCTCTCAA
GCCTCTTGCTTAATCCCCCTTCCTGGTTACCCTCTGACCCTCTCACGACC
CACCACGTTCAAGTCAATCGCATTGAAGCGTGCCTGATCATGAGTCGGTA
GACGTATGTGAAGAAGGGCTGCGAGCAGGGCAAGGCGCGACAGTCACAGC
CACTCGTCGCGATTAGCCTCCCCTCTCCTCTCCCTGCGCTTCTTCCTTTC
TTCATGCATTGACTTAACTTACACTTTGCATCTTCTTCTACTTTTTCATA
TAGCACAATGGCTGCCGCACGACCCCAAGTCTCTGTGTACAACGCGGAGG
GTGCCGCCGTGGCGGAGGTGCCCCTGCCTGCCGTCCTCACGgtgagtcga
tgtagagaggagcgagaagacgagggagggagggagggagggaattagtg
ccaggtttgtctaccttcggccagtaccgcatcgcgtttaggagctctac
ttgcatcatattattgtacgactacctttgtatgtgtgcggagggtactg
cgtgttcttgtcgatggtgttgcgggacgtctgcgcagcatcatcatcga
cggtcactgttgtgcagtctgtctgtctttcatgccagcaaaacaatgga
cgtagcttctggacacatcaatcctcaatctatacattagcacagagctt
cttttagctcaaatatccttcctttcttgccacccaacataatcactcac
tttcaaccctccctccccttcctcctagGCTCCCATCCGCCCGGACGTAG
TCAAGTTCGTCTTCACCGGCCTCAACAAGAACCACCGTCAGCCGTACGCC
GTCTCCGAGAAAGCTGGCCATCAGACCTCCGCCGAGTCGTGGGGAACGGG
CCGCGCCGTCGCTCGTATTCCTCGTGTGGGTGGTGGAGGAACCCAGCGCT
CTGGGCAGGGTGCGTTTGGTAACATGTGCCGAAGTGGGCGTATGTTTGCC
CCCACCAAGATCTGGCGTCGTTGGCACCGTAAGATCAATATCACCCAGAA
GCGTTATGCGGTTGCCTCGGCCTTGGCGGCGTCCGCTGTCCCTGCTTTGG
TAATGGCACGTGGGCACCGTGTGGACGGCGTGGCAGAGATCCCCTTCGTC
CTCGACTCGACCTTCTCCAAACTCGACAAGACGGCGCAAGCAGTCAAGGT
TCTTGGTACCTTGGGCGTGGGCCCCGAGCTGGACAAGAGCAAGGATTCCA
AGAAGATTCGCGCAGGGAAGGGGAAGATGCGTAATCGTCGGTACGTCCTC
CGCCGTGGCCCCCTCGTCATCTACAACACGGGCGAGGAAGGAGTGGTCAA
GGCCGTGCGTAACATCGTGGGTGTTGAAGCCGCGCATGTCGATAGGTTGA
ACTTGCTGCAGTTGGCGCCGGGGGGACATCTTGGCAGGTTCTGCATCTGG
ACGCAGGGTGCGTTTGAGAAGTTAGATTCCGTGTTCGGAACTCAGACGGA
AAAGAGCCAGGTCAAGCTTGACTACGTCTTGCCCCGTGCCCCCATGGCCA
ATGCCGATCTAGCCCGCATCATTAACAGCGAAGAGATCCAATCCGTTGTC
CGCCCGGCGGTGACGGAGACGGTGCGTCTGCCCAGGAAGAAGAACCCTCT
GAAGAATCTGTCCGCCATGGTGCGGCTGAACCCTTATGTGCTGATTCACC
GTCGTCAGGAGCTTAAGCGGGCTGCAGCCGCCGCCGAGGCGAAGAAGGGA
GGGAAAAAAGGGGGGAAGAGCAAGGAGGAGAGGAAGACCAGGAAGGCGGC
AGGCAGGGCATTCTATGAAGTCGCGGTGAAGGACGGGGAGATCAAGTTTT
AAACAGAAGAGAGGGAGAAAGGGTGGAGGAAAGGTGGAGCGGAATGCTGA
GAGGTGTTATTTTGAGGGGGAGGGGAGGCAAGGCGAGGACATTAGGAGAG
GGAAGAGAAGGAGGCTGATGTTGTGTGCCTTTTCTGGCTCCTGAATTCTT
GCTTCGTGGATTTTTCCTGGCCTTGCAGGATTATTGAGGCTCTCAAAGAT
GGAAAGTTCCCGTGAGGGATTAATTGGAAAATATTTTGTCGTTGCT
back to top

protein sequence of NO10G02850.1

>NO10G02850.1-protein ID=NO10G02850.1-protein|Name=NO10G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MAAARPQVSVYNAEGAAVAEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQP
YAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRM
FAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIP
FVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRY
VLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFC
IWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQS
VVRPAVTETVRLPRKKNPLKNLSAMVRLNPYVLIHRRQELKRAAAAAEAK
KGGKKGGKSKEERKTRKAAGRAFYEVAVKDGEIKF*
back to top
Synonyms
Publications