NO10G02770, NO10G02770 (gene) Nannochloropsis oceanica

Overview
NameNO10G02770
Unique NameNO10G02770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length789
Alignment locationchr10:761516..762304 -

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Properties
Property NameValue
DescriptionMpv17/PMP22
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:761516..762304 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of NO10G02770 vs. NCBI_GenBank
Match: EWM25529.1 (Mpv17/PMP22 [Nannochloropsis gaditana])

HSP 1 Score: 284.6 bits (727), Expect = 3.000e-73
Identity = 129/188 (68.62%), Postives = 155/188 (82.45%), Query Frame = 0
Query:   70 YSRLLREHPIKTKLLTSSFLMGAGDISCQFLTRCQKQQEHEQAQQANLSFLPLSLHPYDWHRTLKFFFLGGVVVGPALHHWYSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQLRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVFLSAVSHK 258
            YSR L++HP+KTKLLTSSF+MGAGD++CQFLTR +KQQE            P    PYDW+RT KFF LGGV+VGPALHHWYSFL+R +P Q T+GALKRLA+DQ +FAP FIPVFFSGLQFLDGNFD+ QLR KL+RDY +TL+AN+ +W+PAM++NFR VP  YQVL+SNAVGF WN+FLSA+SHK
Sbjct:   61 YSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISHK 248          
BLAST of NO10G02770 vs. NCBI_GenBank
Match: XP_005854983.1 (protein Mpv17, partial [Nannochloropsis gaditana CCMP526] >XP_005855189.1 protein Mpv17, partial [Nannochloropsis gaditana CCMP526] >EKU21171.1 protein Mpv17, partial [Nannochloropsis gaditana CCMP526] >EKU21379.1 protein Mpv17, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 202.2 bits (513), Expect = 2.000e-48
Identity = 88/119 (73.95%), Postives = 106/119 (89.08%), Query Frame = 0
Query:  139 GGVVVGPALHHWYSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQLRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVFLSAVSHK 258
            GGV+VGPALHHWYSFL+R +P Q T+GALKRLA+DQ +FAP FIPVFFSGLQFLDGNFD+ QLR KL+RDY +TL+AN+ +W+PAM++NFR VP  YQVL+SNAVGF WN+FLSA+SHK
Sbjct:    1 GGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISHK 119          
BLAST of NO10G02770 vs. NCBI_GenBank
Match: CBN78013.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 162.2 bits (409), Expect = 2.300e-36
Identity = 87/199 (43.72%), Postives = 118/199 (59.30%), Query Frame = 0
Query:   70 YSRLLREHPIKTKLLTSSFLMGAGDISCQFLTRCQKQQEHEQAQQANLSFL----PLS-------LHPYDWHRTLKFFFLGGVVVGPALHHWYSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQLRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVFLSAVSHK 258
            Y+ LL   P+ TK +TS  +  AGD+SCQ L     ++E E++   ++  L    P             DW RTL+F F+G  VV PALH WY FL++  P    A  +KR+ALDQL+FAP F+ VF S +  LDGN    ++  KL  DY  TLV+N+  W+PA +INFR V   YQVL++N VGF WN++LS  S+K
Sbjct:    2 YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEKSSAQDVDELEHHEPFGDGGARSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIQRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGN--AAKIDRKLRADYTTTLVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNK 198          
BLAST of NO10G02770 vs. NCBI_GenBank
Match: ETI45948.1 (hypothetical protein F443_09589 [Phytophthora parasitica P1569])

HSP 1 Score: 148.7 bits (374), Expect = 2.600e-32
Identity = 78/189 (41.27%), Postives = 106/189 (56.08%), Query Frame = 0
Query:   70 YSRLLREHPIKTKLLTSSFLMGAGDISCQFLTRCQKQQEHEQAQQANLSFLPLSLHPYDWHRTLKFFFLGGVVVGPALHHWYSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQLRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVFLSAVSHKE 259
            Y+ LL  HP+ TK++T   + G GD+ CQ +     + E   A+              D  R   F FLGG ++ PALH WY FL    P  +TA   KRLALDQL FAPTF+P+  S +  L+G+ +   +  KL  D+     AN+++WVPA ++NFR VP   QVLF+N +G  WN +LS VSH E
Sbjct:   45 YASLLETHPLSTKIVTGGAIAGLGDVGCQLVL----ESEDGDAK-------------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGHSE--DIPDKLRADWWSVTKANWVIWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSHSE 214          
BLAST of NO10G02770 vs. NCBI_GenBank
Match: ETL39355.1 (hypothetical protein L916_09288 [Phytophthora parasitica] >ETL92506.1 hypothetical protein L917_09221 [Phytophthora parasitica] >ETP15776.1 hypothetical protein F441_09521 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 148.7 bits (374), Expect = 2.600e-32
Identity = 79/189 (41.80%), Postives = 106/189 (56.08%), Query Frame = 0
Query:   70 YSRLLREHPIKTKLLTSSFLMGAGDISCQFLTRCQKQQEHEQAQQANLSFLPLSLHPYDWHRTLKFFFLGGVVVGPALHHWYSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQLRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVFLSAVSHKE 259
            Y+ LL  HP+ TK++T   + G GD+ CQ +     + E   A+              D  R   F FLGG ++ PALH WY FL    P  +TA   KRLALDQL FAPTF+P+  S +  L+G+ +   +  KL  D+     AN+++WVPA ++NFR VP   QVLF+N VG  WN +LS VSH E
Sbjct:   45 YASLLETHPLSTKIVTGGAIAGLGDVGCQLVL----ESEDGDAK-------------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGHSE--DIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVVGLLWNAYLSYVSHSE 214          
BLAST of NO10G02770 vs. NCBI_GenBank
Match: XP_002908101.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61184.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 148.7 bits (374), Expect = 2.600e-32
Identity = 78/189 (41.27%), Postives = 110/189 (58.20%), Query Frame = 0
Query:   70 YSRLLREHPIKTKLLTSSFLMGAGDISCQFLTRCQKQQEHEQAQQANLSFLPLSLHPYDWHRTLKFFFLGGVVVGPALHHWYSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQLRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVFLSAVSHKE 259
            Y+ LL  HP+KTK++T   + G GD+ CQ +     + E   A+              D  RT+ F FLGG+++ P LH WY FL    P  +T+   KRLALDQL FAPTF+P+  S +  L+G+   + +  KL  D+   + AN+++WVPA ++NFR VP   QV+FSN VG  WN +LS VSH +
Sbjct:   45 YASLLETHPLKTKIVTGGAIAGLGDVGCQLVL----EGEDGDAK-------------LDVKRTVIFTFLGGLLISPVLHVWYGFLGSRLPGVSTSAVAKRLALDQLGFAPTFLPIILSSVLTLEGH--AEDIPDKLRADWWPLMKANWVVWVPAQILNFRFVPGSMQVIFSNVVGLLWNSYLSYVSHSQ 214          
BLAST of NO10G02770 vs. NCBI_GenBank
Match: ETK85947.1 (hypothetical protein L915_09384 [Phytophthora parasitica] >ETM45777.1 hypothetical protein L914_09245 [Phytophthora parasitica] >ETP43864.1 hypothetical protein F442_09495 [Phytophthora parasitica P10297])

HSP 1 Score: 148.3 bits (373), Expect = 3.400e-32
Identity = 78/189 (41.27%), Postives = 106/189 (56.08%), Query Frame = 0
Query:   70 YSRLLREHPIKTKLLTSSFLMGAGDISCQFLTRCQKQQEHEQAQQANLSFLPLSLHPYDWHRTLKFFFLGGVVVGPALHHWYSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQLRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVFLSAVSHKE 259
            Y+ LL  HP+ TK++T   + G GD+ CQ +     + E   A+              D  R   F FLGG ++ PALH WY FL    P  +TA   KRLALDQL FAPTF+P+  S +  L+G+ +   +  KL  D+     AN+++WVPA ++NFR VP   QVLF+N +G  WN +LS VSH E
Sbjct:   45 YASLLETHPLSTKIVTGGAIAGLGDVGCQLVL----ESEDGDAK-------------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGHSE--DIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSHSE 214          
BLAST of NO10G02770 vs. NCBI_GenBank
Match: XP_008906501.1 (hypothetical protein PPTG_12056 [Phytophthora parasitica INRA-310] >ETN08213.1 hypothetical protein PPTG_12056 [Phytophthora parasitica INRA-310] >KUF81518.1 SYM1 protein [Phytophthora nicotianae])

HSP 1 Score: 148.3 bits (373), Expect = 3.400e-32
Identity = 78/189 (41.27%), Postives = 106/189 (56.08%), Query Frame = 0
Query:   70 YSRLLREHPIKTKLLTSSFLMGAGDISCQFLTRCQKQQEHEQAQQANLSFLPLSLHPYDWHRTLKFFFLGGVVVGPALHHWYSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQLRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVFLSAVSHKE 259
            Y+ LL  HP+ TK++T   + G GD+ CQ +     + E   A+              D  R   F FLGG ++ PALH WY FL    P  +TA   KRLALDQL FAPTF+P+  S +  L+G+ +   +  KL  D+     AN+++WVPA ++NFR VP   QVLF+N +G  WN +LS VSH E
Sbjct:   45 YASLLETHPLSTKIVTGGAIAGLGDVGCQLVL----ESEDGDAK-------------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGHSE--DIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSHSE 214          
BLAST of NO10G02770 vs. NCBI_GenBank
Match: ETO74643.1 (hypothetical protein F444_09651 [Phytophthora parasitica P1976])

HSP 1 Score: 148.3 bits (373), Expect = 3.400e-32
Identity = 78/189 (41.27%), Postives = 106/189 (56.08%), Query Frame = 0
Query:   70 YSRLLREHPIKTKLLTSSFLMGAGDISCQFLTRCQKQQEHEQAQQANLSFLPLSLHPYDWHRTLKFFFLGGVVVGPALHHWYSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQLRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVFLSAVSHKE 259
            Y+ LL  HP+ TK++T   + G GD+ CQ +     + E   A+              D  R   F FLGG ++ PALH WY FL    P  +TA   KRLALDQL FAPTF+P+  S +  L+G+ +   +  KL  D+     AN+++WVPA ++NFR VP   QVLF+N +G  WN +LS VSH E
Sbjct:   45 YASLLETHPLSTKIVTGGAIAGLGDVGCQLVL----ESEDGDAK-------------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGHSE--DIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSHSE 214          
BLAST of NO10G02770 vs. NCBI_GenBank
Match: XP_024580203.1 (peroxisomal membrane mpv17 pmp22-like protein [Plasmopara halstedii] >CEG43834.1 peroxisomal membrane mpv17 pmp22-like protein [Plasmopara halstedii])

HSP 1 Score: 147.9 bits (372), Expect = 4.400e-32
Identity = 80/189 (42.33%), Postives = 104/189 (55.03%), Query Frame = 0
Query:   70 YSRLLREHPIKTKLLTSSFLMGAGDISCQFLTRCQKQQEHEQAQQANLSFLPLSLHPYDWHRTLKFFFLGGVVVGPALHHWYSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQLRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVFLSAVSHKE 259
            Y+ LL  HPI TK++T   + G GD+ CQ     +    H +                D  RT  F FLGGVV+ P LH WY FL    P  +TA   KRLALDQL FAPTF+P+F S +  L+G+   + +  KL  D+      N+++WVPA L NFR VP   QVLFSN +G  WN +LS +SH +
Sbjct:   45 YASLLETHPISTKIVTGGTIAGLGDVGCQLF--LESDDGHAK---------------LDIKRTAIFTFLGGVVISPILHVWYRFLGSRLPGVSTAAITKRLALDQLGFAPTFLPIFLSSVLTLEGH--AEDIPDKLRSDWWPITKTNWVVWVPAQLFNFRFVPGSLQVLFSNVMGLFWNAYLSYMSHSK 214          
The following BLAST results are available for this feature:
BLAST of NO10G02770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25529.13.000e-7368.62Mpv17/PMP22 [Nannochloropsis gaditana][more]
XP_005854983.12.000e-4873.95protein Mpv17, partial [Nannochloropsis gaditana C... [more]
CBN78013.12.300e-3643.72conserved unknown protein [Ectocarpus siliculosus][more]
ETI45948.12.600e-3241.27hypothetical protein F443_09589 [Phytophthora para... [more]
ETL39355.12.600e-3241.80hypothetical protein L916_09288 [Phytophthora para... [more]
XP_002908101.12.600e-3241.27conserved hypothetical protein [Phytophthora infes... [more]
ETK85947.13.400e-3241.27hypothetical protein L915_09384 [Phytophthora para... [more]
XP_008906501.13.400e-3241.27hypothetical protein PPTG_12056 [Phytophthora para... [more]
ETO74643.13.400e-3241.27hypothetical protein F444_09651 [Phytophthora para... [more]
XP_024580203.14.400e-3242.33peroxisomal membrane mpv17 pmp22-like protein [Pla... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001146NSK001146Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02770.1NO10G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585869gene_3930Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g47gene5012Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02770.1NO10G02770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02770 ID=NO10G02770|Name=NO10G02770|organism=Nannochloropsis oceanica|type=gene|length=789bp
ATGCAAAGCATACTTTCCCTTCTCGTCCGGCCACGCACCTTCCTCTCCCC
CCCCCCCACCTCACTAAACGTCAGGCCGCGTCGTCGTCCCTTGACAAGCA
CCAGCAACACTACTTCTACAGCAGCTCCCCCCGTCAAAGTCGCCTCCTCT
CCCTCCCACCCTCTTTCCTCCTCTTCTTCCTTCTCCTCTTTCTCCCCCTG
GGCCACGTATAGCCGCCTTTTGCGTGAGCATCCCATCAAAACCAAGCTCC
TTACTTCCTCCTTTCTCATGGGCGCTGGCGATATCTCCTGCCAATTTCTT
ACTCGCTGTCAAAAGCAACAAGAGCACGAACAAGCCCAGCAAGCGAACCT
GTCCTTCCTTCCTCTCTCCCTCCATCCCTACGACTGGCACCGGACCTTAA
AATTCTTCTTTTTGGGCGGGGTTGTTGTCGGCCCGGCCCTCCACCACTGG
TACTCCTTCCTCGTCCGCTTCTCGCCCGCGCAGACGACCGCTGGAGCATT
GAAACGGTTGGCATTGGATCAACTGGTGTTTGCTCCTACTTTCATTCCGG
TCTTTTTTTCGGGCCTTCAATTCTTAGATGGGAATTTCGACTTGAAGCAA
CTAAGAGGGAAGCTGGAGAGGGACTACGTGGATACGCTCGTCGCAAATTA
CTTGCTGTGGGTCCCAGCGATGCTGATTAATTTTCGATTGGTGCCCATGC
AGTACCAGGTGTTGTTTTCGAATGCTGTGGGCTTTGGGTGGAATGTTTTC
TTGAGTGCCGTGAGCCATAAGGAGGGAGAGGGAGGGTAG
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protein sequence of NO10G02770.1

>NO10G02770.1-protein ID=NO10G02770.1-protein|Name=NO10G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MQSILSLLVRPRTFLSPPPTSLNVRPRRRPLTSTSNTTSTAAPPVKVASS
PSHPLSSSSSFSSFSPWATYSRLLREHPIKTKLLTSSFLMGAGDISCQFL
TRCQKQQEHEQAQQANLSFLPLSLHPYDWHRTLKFFFLGGVVVGPALHHW
YSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQ
LRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVF
LSAVSHKEGEGG*
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Synonyms
Publications