NO10G02720, NO10G02720 (gene) Nannochloropsis oceanica

Overview
NameNO10G02720
Unique NameNO10G02720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3998
Alignment locationchr10:746231..750228 +

Link to JBrowse

Properties
Property NameValue
Descriptionmyb domain protein 119
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:746231..750228 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017930Myb_dom
IPR001005SANT/Myb
Homology
The following BLAST results are available for this feature:
BLAST of NO10G02720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02720.1NO10G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G02720.2NO10G02720.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527217gene_3937Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02720.1NO10G02720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G02720.2NO10G02720.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02720 ID=NO10G02720|Name=NO10G02720|organism=Nannochloropsis oceanica|type=gene|length=3998bp
GGGGACGTTCGTGCACTTCTCTTGATGCTGCGAACGCCGATTCGAACCGG
GAAACCTGCCGTAGACAGGCGATTAAATACAAGAAATCATGTGGTAAAGT
CTGGGTGCCGGAATGCAACGAGGCGTCATTCTTTGTGGTTTATCTGCTGC
TAGTGTTCCTCGGGCACGAGCATGCTGAAGAAGCCAAGCGCACGACTCTG
ATGGGCGATCAGAGTTTACTCTGGTCTTGTTCGTAGTGTGGCCATGTGGT
CCGAGACTTGAGACCCAGTTGCATGCGTGTCACGGTCTTGATCCCGTCGA
GCGTCCTAGAACATTCTAAGCGGCTTGGTATGCCCCTCCTGGTCTCCTTG
GCCCTTCCGGAATCAATTTCTGACTTCCTTTCCGGGGCGGACAAAACTTA
GTCGTCGCGGACTCTTCGCCCTCGACACATTGATCCCTTAATCGCGCTTA
CAAACCAAATCAATCACCAATCTTGACATATAGATATGGCGAGAGAAACA
GAGGCCATTGACAAGCTTTCCTACTTGCTTGGAAAGGTCGTGGGTGGACC
ACCGCTGTTAGGTGAGGCAGCAGCAGCGGCAGCATCCGCCTTCATGAATT
CGTCCAAGCGGAGGAGAATTGCAACGAAATGGACACAAGCAGAAGACCAA
CGGATACAAGCACTAGTCCAGCAGCACGGGACGCGCAGCTGGACCCTGGT
CTCGCGTGAGCTTCCCAACCGCAACCCCAAACAGgtacgaatattctctc
ctgttctttaaaaacaacacttgttatgtcttcgaatcctcggccaacag
cggcggcgatacatgcatttagcgtcacccttgtattgcaccgctcacaa
gatttcgccatagcagctcttgattccagacgttgggactgtggtgggcg
gggttcaaaatgctctccgtcagcaagatccacatagttaaagaaggcag
tagctcttcatctcgactgtctctctaaatgcccccactaccataaaatc
ctcactgttcccactccaacagTGTCGCGAGCGGTGGTTCAATCAGCTCG
ACCCGAACATCAAGCAGGAGGGCTGGACGGAGGAAGAGGAAGAGACGCTT
CTCCGAGCCCACGCCATGTTAGGCAATCGGTGGATGGAGATCTCGAAGCT
TCTGCCAGGAAGGACAGATAATGCAGTCAAGAATCATTGgtaagtgggct
atgcttggtgcatggggggaatggagggagggatggaaggagggagggag
taaggaaggaagggagggagacggccgagatatatgtatgccccatgcta
cctctggtctctctccctctctttaaagatataaatgtggtgtcctcacc
ccttcatttccttctttatataccaaccatgtatctaactcatcgcccac
tccttcctcctcactcccctcttcaatcagGAACTGTGCCCTGCGCCGCT
TGGAAAAGCTGGCGGAGCGAAAAAGGGCGGAGGAAGGAGGGGGCGGGCTG
GGCAAGACCTCTACGGTTAAAATATCCCGTGGCAGGAAGCATAAAAAAAG
GAAGCGTATCGAGACGAGAAACATGGAGCGGATGGAGTGGGAGGAGGAAA
AGGTGAAGACGAAGGAGGAGGAGAATGGAAGGTGGTTGGAGGATAGCACG
CAAATAAAGGAAGAATCAGAAGCAGCGCCAACAGTGGCAGTAGCAGGCTC
AGTGAATGGTGGTGTTATAGGAAGTGGGGGAGGAAGGGACGAAGGATGGG
TTGGAGCTACAGCTGCAGGCCCCGCAAGTGGATTAGTGATGGTAGGGAGG
GGAAAACGAGGACGGAAAATGGAAGGAGTCGTCACAGCATCAACAGGAGT
CAACAAGCATCTTAGTGGTACCAGCAGTAGCAACAACAGCAATAGTAACA
GCAGGAGGAAGAAGAGAGATACTTTGGCTGGTCTGGCACTCCCAGCTCTT
CCTGTCTCCCGAGGTACGTCCGACCTACCCATCCCTCTCTTCCTTTTGCA
GGACAGGGCACCATCGCCTCTGGCGATATATAGATGCCCTCCTGAGCAAG
AACAGTACTGGCACCAGCAGCACCAGCAACAGCACCCGTATCAGCACCAG
CAACAGCAGCGGCATTCAGACCAACTGCAGGAACATCTTCTTCACCAGCA
GATGGAGCAGGCCATACGCCTCCAACAGCGGCAACAGCCTCAGTTACAAT
TACAGCAGCAACAGCAGCAGCAGCAGCTGCCGGCGGCGGGGATGGATTTT
CGGGGAGATACGTTGCATACTTATTTGCAGGCACGTGACGGGAGTAGTGA
GGGAGGAGGAGGAGGAGGAGGGGGAGGCGGGATGGGAGGTGGTAGTGGTG
GCTCTTTGTTAGGCGTTGAATCGATCCCGATTTATCGTCATCAGCATACT
GCCGCAGGTGCTGCCTCCTCTTTAAGAGATGATGGGAATGCGGAGTCTCG
TCTGGGGGCAGGTACACCAGAGCCCTCATCCCTTCCCGTTCCTGCTTCAG
TGTCGACATTCCGACAACAGCAGCAGCAATATTCCCAAAATCGCCTCGAG
CAGCAGAAGTCGGACATGCACAACCAGCCCTACCAGCAGCAGCAACAGCA
GCAGCAGCAGCAGCAAAATCAGCTCCAGCAGTTTCTCCTCTACCACCAGA
TGGAAACACTCAAACTCTTACAACAACAGCAGCAGTTGCCGCAGCAACAG
CACTCAGCGTTCTCACTCAGCTTCGTTCCCAAGGGCACCAATAGTAGCCG
CAACCATACTCTTTCCGCTTCTTCCGTTTCTTCCGTTTCTTATGTGAATG
GAGCAGCAGCCCTGGAAGAGCTGAGGAGTGGGCGGCGGAGATAAGCGGAG
GAGGGAGGGAAAGGGAAGGATTCTAAATGTGAGATAGAAGTCGTCTGTAG
CAGCACCTGTAGTACGACCAGGGCAATCAACTGGAGACAAATGGAAATAC
GAGAACAAAAAGAAGGAGAAAGCCGAATGCATGTCAAAGGTACTGTACAT
ACAGTGGAAATATTTTTACAAACGAGCTCTTTGACGGGGCATTCTATGTT
AAAGATCAAGTTGACGTGAGTAGTTGACGTCAGGACAGATAAAAAACGGC
ACATTCGTAGATGTTGAATGAAAAATTAAATGAAAAGAAGTTAAATACCA
AGTCTGGGTCGTCTGAAGATGATGAATTTTAGCTCGGGTAGGAAAGAACG
TGAGAGAAAAAAATGGCCAAAGACAACTTTCGCTTCTTCCAGCTATCCTG
CAGAAAGCCCCGTGGATATTTCTCAAACAAAAGTCAATCACTGTTTTCTC
GTTGATATCGTCGTGTTATTATCACAATGGAGAAAAAGGAGAAGAGGAAG
ATAAAAAGTAGAGCTGGAAGCGTGTCATTCTAATCCCGTTGAGTACCTCT
TGGGATTCTCCTTTCCAGAATCAAGAAGGTGGTGCCTCTCATTATCTTTT
TCATCCTCTAACTATTCTCAGACACCCACTCTAAACACATACACACACAC
ACACACACACACACACACACACACACACACACATGCAGACCCAACACCAA
CACAGACACACTCACACATACACTCTCTCACTCACCGACTCTCGTCGATC
CGTCGCAAAAATAATCTTCTTAGTCGTTGTTACCGCACGCTCATACATGT
GTCTGCTTTGTCTGCCTCTTGACCCGTGTCCCGTTGCCTTTATACCTTTC
GCTTTCCCTACCCTTTGTCCCTATCCACTGCTGGTGTCATTTTGCTTCCG
TTGCGATTTTTGATCCTCATTCTCTCATCATCTCTGTATCTCCCTATCTC
TCTCTGCTCTCCTCCCTCCCTTCCCCCATTCGTGTCCCTCACAATATATA
CTTCAGCATTTCGTTAACCCACGAAACAAGGATCTACTGGACTTTTCTCT
TCTTCCCTCTCTTCCCCTGCTCTCTCCCCTCCTCTCTCCCTTCTCCAGTT
TATGCATCTAATTACGTCGCCCTCCGCCACGTCCCCGCCCTCCCCCCC
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protein sequence of NO10G02720.1

>NO10G02720.1-protein ID=NO10G02720.1-protein|Name=NO10G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp
MARETEAIDKLSYLLGKVVGGPPLLGEAAAAAASAFMNSSKRRRIATKWT
QAEDQRIQALVQQHGTRSWTLVSRELPNRNPKQCRERWFNQLDPNIKQEG
WTEEEEETLLRAHAMLGNRWMEISKLLPGRTDNAVKNHWNCALRRLEKLA
ERKRAEEGGGGLGKTSTVKISRGRKHKKRKRIETRNMERMEWEEEKVKTK
EEENGRWLEDSTQIKEESEAAPTVAVAGSVNGGVIGSGGGRDEGWVGATA
AGPASGLVMVGRGKRGRKMEGVVTASTGVNKHLSGTSSSNNSNSNSRRKK
RDTLAGLALPALPVSRGTSDLPIPLFLLQDRAPSPLAIYRCPPEQEQYWH
QQHQQQHPYQHQQQQRHSDQLQEHLLHQQMEQAIRLQQRQQPQLQLQQQQ
QQQQLPAAGMDFRGDTLHTYLQARDGSSEGGGGGGGGGGMGGGSGGSLLG
VESIPIYRHQHTAAGAASSLRDDGNAESRLGAGTPEPSSLPVPASVSTFR
QQQQQYSQNRLEQQKSDMHNQPYQQQQQQQQQQQNQLQQFLLYHQMETLK
LLQQQQQLPQQQHSAFSLSFVPKGTNSSRNHTLSASSVSSVSYVNGAAAL
EELRSGRRR*
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protein sequence of NO10G02720.2

>NO10G02720.2-protein ID=NO10G02720.2-protein|Name=NO10G02720.2|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MLGNRWMEISKLLPGRTDNAVKNHWNCALRRLEKLAERKRAEEGGGGLGK
TSTVKISRGRKHKKRKRIETRNMERMEWEEEKVKTKEEENGRWLEDSTQI
KEESEAAPTVAVAGSVNGGVIGSGGGRDEGWVGATAAGPASGLVMVGRGK
RGRKMEGVVTASTGVNKHLSGTSSSNNSNSNSRRKKRDTLAGLALPALPV
SRGTSDLPIPLFLLQDRAPSPLAIYRCPPEQEQYWHQQHQQQHPYQHQQQ
QRHSDQLQEHLLHQQMEQAIRLQQRQQPQLQLQQQQQQQQLPAAGMDFRG
DTLHTYLQARDGSSEGGGGGGGGGGMGGGSGGSLLGVESIPIYRHQHTAA
GAASSLRDDGNAESRLGAGTPEPSSLPVPASVSTFRQQQQQYSQNRLEQQ
KSDMHNQPYQQQQQQQQQQQNQLQQFLLYHQMETLKLLQQQQQLPQQQHS
AFSLSFVPKGTNSSRNHTLSASSVSSVSYVNGAAALEELRSGRRR*
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Synonyms
Publications