NO10G02690, NO10G02690 (gene) Nannochloropsis oceanica

Overview
NameNO10G02690
Unique NameNO10G02690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2791
Alignment locationchr10:734197..736987 -

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Properties
Property NameValue
DescriptionMyb-related transcription factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:734197..736987 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017930Myb_dom
IPR001005SANT/Myb
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO10G02690 vs. NCBI_GenBank
Match: EWM25490.1 (myb-related transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 182.6 bits (462), Expect = 3.900e-42
Identity = 94/154 (61.04%), Postives = 109/154 (70.78%), Query Frame = 0 
Query:   58 LPAAGMPTPKQQHLQPSQRPARQASASSQTQQTDEEVCGKNRRAWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNHLDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYSTMRKNMRRAAK 212
            LPA G+     + +Q       Q     Q    D+     NRR W+ +ED CIL+LV  HGT++WT IAQGLA +  G  R+GKQCRTRWLNHL+P I K+PWT QEE IVQ+AQQRLGNRWA IAKL+PGRTDNSIKNYYYSTMRKNMRR AK
Sbjct:    8 LPAGGISGQGMKTIQ-------QTPTHHQDSFEDDISSKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAK 154
[Close]
BLAST of NO10G02690 vs. NCBI_GenBank
Match: CCI44188.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 169.1 bits (427), Expect = 4.400e-38
Identity = 75/114 (65.79%), Postives = 92/114 (80.70%), Query Frame = 0 
Query:   99 RRAWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNHLDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYSTMRKNMRRAAKQ 213
            RRAWT KED+ I+ LV E+GT+ W+ I+  L     G DRTGKQCRTRWLNHLDP I K PWTP+EE I+ +AQ RLGN+WAEI+KL+PGRTDN+IKN++YS+MR+ MRR AKQ
Sbjct:   16 RRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNSLNYGTDRTGKQCRTRWLNHLDPTIKKDPWTPEEEQIIDDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQ 129
[Close]
BLAST of NO10G02690 vs. NCBI_GenBank
Match: CCI44190.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 169.1 bits (427), Expect = 4.400e-38
Identity = 75/114 (65.79%), Postives = 92/114 (80.70%), Query Frame = 0 
Query:   99 RRAWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNHLDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYSTMRKNMRRAAKQ 213
            RRAWT KED+ I+ LV E+GT+ W+ I+  L     G DRTGKQCRTRWLNHLDP I K PWTP+EE I+ +AQ RLGN+WAEI+KL+PGRTDN+IKN++YS+MR+ MRR AKQ
Sbjct:   16 RRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNSLNYGTDRTGKQCRTRWLNHLDPTIKKDPWTPEEEQIIDDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQ 129
[Close]
BLAST of NO10G02690 vs. NCBI_GenBank
Match: CCI44193.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 169.1 bits (427), Expect = 4.400e-38
Identity = 75/114 (65.79%), Postives = 92/114 (80.70%), Query Frame = 0 
Query:   99 RRAWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNHLDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYSTMRKNMRRAAKQ 213
            RRAWT KED+ I+ LV E+GT+ W+ I+  L     G DRTGKQCRTRWLNHLDP I K PWTP+EE I+ +AQ RLGN+WAEI+KL+PGRTDN+IKN++YS+MR+ MRR AKQ
Sbjct:   16 RRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNSLNYGTDRTGKQCRTRWLNHLDPTIKKDPWTPEEEQIIDDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQ 129
[Close]
BLAST of NO10G02690 vs. NCBI_GenBank
Match: CCA17493.1 (myblike DNAbinding protein putative [Albugo laibachii Nc14])

HSP 1 Score: 167.5 bits (423), Expect = 1.300e-37
Identity = 74/114 (64.91%), Postives = 92/114 (80.70%), Query Frame = 0 
Query:   99 RRAWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNHLDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYSTMRKNMRRAAKQ 213
            RRAWT KED+ I+ LV E+GT+ W+ I+  L     G +RTGKQCRTRWLNHLDP I K PWTP+EE I+ +AQ RLGN+WAEI+KL+PGRTDN+IKN++YS+MR+ MRR AKQ
Sbjct:   16 RRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNSLNYGTERTGKQCRTRWLNHLDPTIKKDPWTPEEEQIIDDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQ 129
[Close]
BLAST of NO10G02690 vs. NCBI_GenBank
Match: ETI50817.1 (hypothetical protein F443_05707 [Phytophthora parasitica P1569])

HSP 1 Score: 167.2 bits (422), Expect = 1.700e-37
Identity = 78/133 (58.65%), Postives = 99/133 (74.44%), Query Frame = 0 
Query:   99 RRAWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNHLDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYSTMRKNMRRAAK-------QFVDSGLGESAAA 225
            RRAWT KED+ I+ LV E+GT+ W+ I+  L     G +RTGKQCRTRWLNHLDP I K PWT +EE I+++AQ RLGN+WAEI+KL+PGRTDN+IKN++YS+MR+ MRR AK       Q   SG+G + AA
Sbjct:   20 RRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAA 152
[Close]
BLAST of NO10G02690 vs. NCBI_GenBank
Match: ETI50818.1 (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 167.2 bits (422), Expect = 1.700e-37
Identity = 78/133 (58.65%), Postives = 99/133 (74.44%), Query Frame = 0 
Query:   99 RRAWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNHLDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYSTMRKNMRRAAK-------QFVDSGLGESAAA 225
            RRAWT KED+ I+ LV E+GT+ W+ I+  L     G +RTGKQCRTRWLNHLDP I K PWT +EE I+++AQ RLGN+WAEI+KL+PGRTDN+IKN++YS+MR+ MRR AK       Q   SG+G + AA
Sbjct:   20 RRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAA 152
[Close]
BLAST of NO10G02690 vs. NCBI_GenBank
Match: XP_002909579.1 (myb-like DNA-binding protein, putative [Phytophthora infestans T30-4] >EEY58393.1 myb-like DNA-binding protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 167.2 bits (422), Expect = 1.700e-37
Identity = 78/133 (58.65%), Postives = 99/133 (74.44%), Query Frame = 0 
Query:   99 RRAWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNHLDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYSTMRKNMRRAAK-------QFVDSGLGESAAA 225
            RRAWT KED+ I+ LV E+GT+ W+ I+  L     G +RTGKQCRTRWLNHLDP I K PWT +EE I+++AQ RLGN+WAEI+KL+PGRTDN+IKN++YS+MR+ MRR AK       Q   SG+G + AA
Sbjct:   20 RRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAA 152
[Close]
BLAST of NO10G02690 vs. NCBI_GenBank
Match: KUF76950.1 (Transcriptional activator Myb [Phytophthora nicotianae])

HSP 1 Score: 167.2 bits (422), Expect = 1.700e-37
Identity = 78/133 (58.65%), Postives = 99/133 (74.44%), Query Frame = 0 
Query:   99 RRAWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNHLDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYSTMRKNMRRAAK-------QFVDSGLGESAAA 225
            RRAWT KED+ I+ LV E+GT+ W+ I+  L     G +RTGKQCRTRWLNHLDP I K PWT +EE I+++AQ RLGN+WAEI+KL+PGRTDN+IKN++YS+MR+ MRR AK       Q   SG+G + AA
Sbjct:   20 RRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAA 152
[Close]
BLAST of NO10G02690 vs. NCBI_GenBank
Match: XP_008608150.1 (hypothetical protein SDRG_04263 [Saprolegnia diclina VS20] >EQC38558.1 hypothetical protein SDRG_04263 [Saprolegnia diclina VS20])

HSP 1 Score: 166.8 bits (421), Expect = 2.200e-37
Identity = 77/130 (59.23%), Postives = 99/130 (76.15%), Query Frame = 0 
Query:   83 ASSQTQQTDEEVCGKNRRAWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNHLDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYSTMRKNMRRAAKQ 213
            + S T++T        RRAWT KEDE I+ LV E+GT+ W+ I+  L     G +RTGKQCRTRWLNHLDP+I K PWT +EE I+++AQ RLGN+WAEI+KL+PGRTDN+IKN++YS+MR+ MRR AKQ
Sbjct:    5 SDSSTKKTASSGSAYERRAWTRKEDESIIRLVDEYGTKRWSVISDHLNNENFGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQ 134
The following BLAST results are available for this feature:
BLAST of NO10G02690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25490.13.900e-4261.04myb-related transcription factor [Nannochloropsis ... [more]
CCI44188.14.400e-3865.79unnamed protein product [Albugo candida][more]
CCI44190.14.400e-3865.79unnamed protein product [Albugo candida][more]
CCI44193.14.400e-3865.79unnamed protein product [Albugo candida][more]
CCA17493.11.300e-3764.91myblike DNAbinding protein putative [Albugo laibac... [more]
ETI50817.11.700e-3758.65hypothetical protein F443_05707 [Phytophthora para... [more]
ETI50818.11.700e-3758.65hypothetical protein, variant [Phytophthora parasi... [more]
XP_002909579.11.700e-3758.65myb-like DNA-binding protein, putative [Phytophtho... [more]
KUF76950.11.700e-3758.65Transcriptional activator Myb [Phytophthora nicoti... [more]
XP_008608150.12.200e-3759.23hypothetical protein SDRG_04263 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001135NSK001135Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02690.1NO10G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629636gene_3941Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02690.1NO10G02690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02690 ID=NO10G02690|Name=NO10G02690|organism=Nannochloropsis oceanica|type=gene|length=2791bp
GTTTTGCCCTCACGTCAACTCAAAATCTCATGGGCCCATCACGCAAACAG
ACGACGCCCATGCCTTGCTTACCCTCCCAAGCAGTGACACGAACTTGACA
TCATTCCTATACATTCTACCTTTAGCAACCATCTAGTAAACCATGCATTG
CCCACACTATCTACATTGTCTTCTGCGTGTAGCATCCCCATGTGAAATCA
GGTTTTGCGGCTATTGGCCTCATTCCAGCAGGCGCGCTGCCTCCGCCAGA
CTTCAGTTCCCCACGTATACATGCGCACCGACGAGGTCACTCCGTACCTT
GAAAGCGTTACACCAGAGAGCCCAACAGCTCCCATGTGCCATCCTTGTCT
CATCATTTGTCCTTTTCCCCTGTCTATCCCTTATTTCAATCTACAACAAC
AGACAGAACCACGCGTCATCAGGAAAGACCCATCGTCGCACCCATGGAGC
ACACACAACCCCAACAAGTGCAAGATAAATCCCCAAATTCCTGTGAAGGA
AGCAATCAGATCGATGTTGTCCAAGGACAACAGGATGTGGGGCAAATAGA
GAATGATTTGACCGCCCTGTTGCGGCGGGCCATGTTAGAGACTGGTAAGG
ACCCCAGCATGCTGCTGCCGGCCGCCGGGATGCCGACGCCCAAGCAACAG
CACCTGCAGCCCTCCCAGAGACCAGCTCGCCAGGCATCAGCCTCATCACA
AACACAACAAACCGACGAGGAAGTGTGTGGGAAGAACCGACGGGCCTGGA
CCGATAAGGAGGACGAGTGCATCTTGGAGCTGGTTTACGAGCACGGCACG
CGGAGCTGGACAGCGATTGCTCAAGGACTGGCCATCAGGGCGCCGGGAAT
GGATCGTACGGGCAAGCAATGTCGCACGCGATGGTTGAATCATTTAGACC
CGGCCATCAACAAGTCCCCTTGGACGCCGCAGGAGGAAATGATCGTGCAA
GAGGCGCAGCAACGCCTTGGGAATCGGTGGGCGGAAATTGCCAAACTCAT
CCCGGGCCGGACAGATAACAGCATCAAAAATTACTACTACTCGACGATGC
GAAAGAACATGCGTCGAGCTGCCAAGCAATTCGTAGACAGTGGATTGGGA
GAATCTGCGGCGGCAAAAGGGGCGGGGGAGATTGCTGCAGCAGGTGGCGG
TCGTGGGGAAGCAGGAGCAAGAGCAGGAGCAGGAGCAGCAGAATGGTCGG
GGGTCTCTGCAGATGGTGAGGCTAAGTCGCAGGACCCGCAACAACAGAAA
CGAGGTGCTAAATTTGGAGCCCACGGTGCGACGAAGCGAGCGAAAGCGAG
CATGAACAAGGAGGTGAGAGAGGAACAGCAGGATGCCGCGACCAGTTGCA
GTAGTCGCCGCATAAATAGTAAGAGCACTACGAGCAGCCCCCATGCGCTG
CACCGCGGTATGATAGATGATGCGCTACCTTCCCTAGCTACTCTGGCTGT
TCCTCAATTTAATTATCTAGGAGGACATACCTTCATTCAGGATGCCATTG
CTGCGGCCGGGATGGGTGGTTACCCTGGAGGAGAATCCCCGTACCTCTCC
TCCTCATCCTCCTCCTCGACCTTCACGACTCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAACAGCAGTGGCAGCTGCAACAGCAGCAAGAGCAAATACAGC
AGTATTTGCTCTATCAGCAGATGGAGCAGCTGTATCAGCAGCAACTTCAG
CACCAGCACCAGATCCACCAACAACAACAGGAGCATCACGGCTTCAACCC
TCTCCCTCCCGCTGGCGCCACCCCCTTCGACCCACAACCACCCTTCCAGA
CCTCAAACGAGGGCGTTAGTAATAATATGGACCTCGCCACAAAAATCAGT
GAACTAATGGCGAGTTTTTCTACTTCTTCCTCTTCTTCTCCTCCTCTTCC
TACATCGGGCCCCTATCCCTCCTCTGCCTCTGCTTCTGCCCCCTCTTCCT
CCGCCGCCTACACAGGCTTACCAACCACTTCCGCACTACTAGCAGGGATG
GACTACTCGGGGCGTTCTGCTACCGTCGCTGCTGCTGCTGCCGCTGTCGC
TGCTGCTGCTGCTGCTGGAGGATCTTGCTCTCCACAAACCTACCTTTTCC
CTCCGTCTTCACACCGGCCTCCTTCTGCTGCTGGTGCTCCTGTATATTTT
GATGATTGCTTTGATGGAAGCAGCACACCGCTGCACCTCCATGGCAGGAA
TGACTTCATGCATGCCGCGCATTCCTTTGGTCCTTCCTCTCAACACCACC
ATAATCATTGCCAACAACAACAGCAGCAGCAGCAGCAACAGCAACAGCAA
CAGCAACAACAAAAACAACAACACCAATAGTTTGTGTCTATATGTGTGTC
TGTGTCTATGACCGTATGTCAATTTGTGGAGAGATACGTGCTCCATAATC
TCCTCCTCCACCACCCCCTCTTCCTTCTCCTCCACCACCACCTCCTCCTC
CTTCTCCTCCACCTCCTCATCTTTTTCGCTCTACACACATATCCCAACCA
CCAACTACCACCACCATCTCTTCCAACCCAACATTGACCGCTTTAAATAT
TTATTTCATCTCGAGAAAGCAGAAAATGAAATCTCAGAATCCCCTCCCAA
TGAAACAAAAGACAAGGAAAAAGATGACGACGAAGAATACGGCAATCATG
CTGGGGTAAAGCACCAAAATAGAAGGACAACCAGCTGGCAGCGCCAGAAA
ATTGGTATCTAAATTGCAATAGCAACAACCAAGAATAAGAAGAAAAGGAC
GAAGACAGGAGGTTGAGTTGGAGGATGAAGACGAAAAAACG
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protein sequence of NO10G02690.1

>NO10G02690.1-protein ID=NO10G02690.1-protein|Name=NO10G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp
MEHTQPQQVQDKSPNSCEGSNQIDVVQGQQDVGQIENDLTALLRRAMLET
GKDPSMLLPAAGMPTPKQQHLQPSQRPARQASASSQTQQTDEEVCGKNRR
AWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNH
LDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYS
TMRKNMRRAAKQFVDSGLGESAAAKGAGEIAAAGGGRGEAGARAGAGAAE
WSGVSADGEAKSQDPQQQKRGAKFGAHGATKRAKASMNKEVREEQQDAAT
SCSSRRINSKSTTSSPHALHRGMIDDALPSLATLAVPQFNYLGGHTFIQD
AIAAAGMGGYPGGESPYLSSSSSSSTFTTQQQQQQQQQQQQWQLQQQQEQ
IQQYLLYQQMEQLYQQQLQHQHQIHQQQQEHHGFNPLPPAGATPFDPQPP
FQTSNEGVSNNMDLATKISELMASFSTSSSSSPPLPTSGPYPSSASASAP
SSSAAYTGLPTTSALLAGMDYSGRSATVAAAAAAVAAAAAAGGSCSPQTY
LFPPSSHRPPSAAGAPVYFDDCFDGSSTPLHLHGRNDFMHAAHSFGPSSQ
HHHNHCQQQQQQQQQQQQQQQQQKQQHQ*
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Synonyms
Publications