NO10G02660, NO10G02660 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G02660 vs. NCBI_GenBank
Match: EWM25482.1 (swib mdm2 domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 211.8 bits (538), Expect = 2.500e-51 Identity = 115/232 (49.57%), Postives = 136/232 (58.62%), Query Frame = 0 Query: 28 NKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGFPQEKISKELQALIGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGRA 260 NKE AWSEEM AFLG GYMSRPQVTK +W+YIK + LQ P DRRVILCD L+ LF V +NMFK+P INKH+R DDR K G PAK+G GFP EKIS +LQ L+GK TASRNEVVK++W H+K++++QDP+NRM I CD T K ILGVD+CHGF ++KLL PHFLGRA Sbjct: 137 NKEYAWSEEMAAFLGEGYMSRPQVTKRMWEYIKTQGLQKPEDRRVILCDERLQRLF-SVPSLNMFKLPVMINKHMRQDDR--------------------------EEGADEGREKQEGGEVGKKERASTKPRNPKRKKTGEAGTPAKRG---GFPPEKISVQLQGLMGKATASRNEVVKEIWTHVKSHNLQDPANRMMISCDATLKGILGVDACHGFGISKLLTPHFLGRA 338
BLAST of NO10G02660 vs. NCBI_GenBank
Match: KEH27539.1 (upstream activation factor subunit UAF30, putative [Medicago truncatula]) HSP 1 Score: 131.7 bits (330), Expect = 3.200e-27 Identity = 106/242 (43.80%), Postives = 143/242 (59.09%), Query Frame = 0 Query: 16 DMPVAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQALIGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFL 257 D V KK GG+ K + S ++ F+G M+R +V K +W YI+EKDLQ+P +RR I+CD L++LF GV+ INMF+M K + KH+ D XXXXXXXXXXXXXXXXXXXXXXX KE R K G G+GF ++S L +G+ SR++V+K++W++IK N++QDPS++ ILCDE K + VDS GF + KLLAPHF+ Sbjct: 44 DEVVKKKGGGGFCKICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALF-GVDTINMFQMNKVLAKHIWPLD-----------------SDDVIQVKSAPKXXXXXXXXXXXXXXXXXXXXXXXDLDEPKGKEKRQ----KVGSGKGFLAPLQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFI 263
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_010096161.1 (zinc finger CCCH domain-containing protein 19 isoform X1 [Morus notabilis] >EXB63556.1 Upstream activation factor subunit spp27 [Morus notabilis]) HSP 1 Score: 128.3 bits (321), Expect = 3.600e-26 Identity = 124/234 (52.99%), Postives = 155/234 (66.24%), Query Frame = 0 Query: 22 KKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGFPQE-KISKELQALIGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPH 255 KK GG+NK + S + +G MSRP+V K +W YI+E DLQ+P ++R I+CD L++LF V INMF+M KA++KH+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GG GF + +S +LQA IG+ +R EVVKKLW +IK ND+QDP N+ NI+CDE+ + + VD + F+MNK LA H Sbjct: 104 KKRGGFNKLCSLSPHLQEVVGEAEMSRPEVVKKLWSYIRENDLQDPKNKRNIICDESLQALF-RVNTINMFQMNKALSKHI-------WPLSTEDENVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGFAKVCSLSPQLQAFIGEAELARTEVVKKLWSYIKENDLQDPKNKQNIICDESLRALFHVDRINMFQMNKALAKH 329
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_024021294.1 (DNA ligase 1 isoform X2 [Morus notabilis]) HSP 1 Score: 128.3 bits (321), Expect = 3.600e-26 Identity = 124/234 (52.99%), Postives = 155/234 (66.24%), Query Frame = 0 Query: 22 KKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGFPQE-KISKELQALIGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPH 255 KK GG+NK + S + +G MSRP+V K +W YI+E DLQ+P ++R I+CD L++LF V INMF+M KA++KH+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GG GF + +S +LQA IG+ +R EVVKKLW +IK ND+QDP N+ NI+CDE+ + + VD + F+MNK LA H Sbjct: 104 KKRGGFNKLCSLSPHLQEVVGEAEMSRPEVVKKLWSYIRENDLQDPKNKRNIICDESLQALF-RVNTINMFQMNKALSKHI-------WPLSTEDENVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGFAKVCSLSPQLQAFIGEAELARTEVVKKLWSYIKENDLQDPKNKQNIICDESLRALFHVDRINMFQMNKALAKH 329
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_019254632.1 (PREDICTED: upstream activation factor subunit spp27 isoform X2 [Nicotiana attenuata] >OIT07203.1 hypothetical protein A4A49_24935 [Nicotiana attenuata]) HSP 1 Score: 127.9 bits (320), Expect = 4.700e-26 Identity = 77/247 (31.17%), Postives = 118/247 (47.77%), Query Frame = 0 Query: 15 EDMPVAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQAL--IGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGR 259 E M KK GG+NK A S ++ +G+ + RP+V K +W YI+EK+LQNP ++R ILCD VL +F + ++MF+M K ++KH+ D E + ++GGG GF ++S L IG+ +R +V+K++W++IK N++QDPS++ I+CDE K + VDS HGF + KLL HF+ R Sbjct: 109 EKMNGEAKKKGGFNKPCALSPQLQKLVGQSELGRPEVVKKIWAYIREKNLQNPQNKRKILCDEVLSEIF-RAKTVDMFQMNKVLSKHIWPIDE-----------------------------------EDASQVKSSVKKRLPKQGREEALDEPKQKEKRQKGGGSGFLAPVRLSDALVKFFGIGENALTRADVIKRIWQYIKENELQDPSDKKTIICDERLKELFQVDSFHGFTVTKLLTAHFIKR 319
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_019254556.1 (PREDICTED: upstream activation factor subunit spp27 isoform X1 [Nicotiana attenuata]) HSP 1 Score: 127.5 bits (319), Expect = 6.100e-26 Identity = 75/240 (31.25%), Postives = 116/240 (48.33%), Query Frame = 0 Query: 22 KKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQAL--IGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGR 259 KK GG+NK A S ++ +G+ + RP+V K +W YI+EK+LQNP ++R ILCD VL +F + ++MF+M K ++KH+ D E + ++GGG GF ++S L IG+ +R +V+K++W++IK N++QDPS++ I+CDE K + VDS HGF + KLL HF+ R Sbjct: 117 KKKGGFNKPCALSPQLQKLVGQSELGRPEVVKKIWAYIREKNLQNPQNKRKILCDEVLSEIF-RAKTVDMFQMNKVLSKHIWPIDE-----------------------------------EDASQVKSSVKKRLPKQGREEALDEPKQKEKRQKGGGSGFLAPVRLSDALVKFFGIGENALTRADVIKRIWQYIKENELQDPSDKKTIICDERLKELFQVDSFHGFTVTKLLTAHFIKR 320
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_009774096.1 (PREDICTED: upstream activation factor subunit spp27-like isoform X2 [Nicotiana sylvestris] >XP_016443902.1 PREDICTED: upstream activation factor subunit spp27-like isoform X2 [Nicotiana tabacum]) HSP 1 Score: 126.7 bits (317), Expect = 1.000e-25 Identity = 76/240 (31.67%), Postives = 114/240 (47.50%), Query Frame = 0 Query: 22 KKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQAL--IGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGR 259 KK GG+NK A S ++ +G + RP+V K +W YI+EK+LQNP ++R ILCD VL +F + I+MF+M K ++KH+ D E + +GGG GF ++S L IG+ +R +V+K++W++IK N++QDPS++ I+CDE K + VDS HGF + KLL HF+ R Sbjct: 114 KKKGGFNKPCALSPQLQKLVGESELGRPEVVKKIWAYIREKNLQNPQNKRKILCDEVLSEIF-RAKTIDMFQMNKVLSKHIWPIDE---------------------------EDGSFPLTHAASQVKSSVKKRLPKQGREEALDEPKQKEKRHKGGGSGFLAPVRLSDALVKFFGIGENALTRADVIKRIWQYIKENELQDPSDKKTIICDERLKELFQVDSFHGFTVTKLLTAHFIKR 325
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_016443904.1 (PREDICTED: upstream activation factor subunit spp27-like isoform X4 [Nicotiana tabacum]) HSP 1 Score: 126.7 bits (317), Expect = 1.000e-25 Identity = 76/240 (31.67%), Postives = 114/240 (47.50%), Query Frame = 0 Query: 22 KKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQAL--IGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGR 259 KK GG+NK A S ++ +G + RP+V K +W YI+EK+LQNP ++R ILCD VL +F + I+MF+M K ++KH+ D E + +GGG GF ++S L IG+ +R +V+K++W++IK N++QDPS++ I+CDE K + VDS HGF + KLL HF+ R Sbjct: 114 KKKGGFNKPCALSPQLQKLVGESELGRPEVVKKIWAYIREKNLQNPQNKRKILCDEVLSEIF-RAKTIDMFQMNKVLSKHIWPIDE-----------------------------------EDASQVKSSVKKRLPKQGREEALDEPKQKEKRHKGGGSGFLAPVRLSDALVKFFGIGENALTRADVIKRIWQYIKENELQDPSDKKTIICDERLKELFQVDSFHGFTVTKLLTAHFIKR 317
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_009774095.1 (PREDICTED: upstream activation factor subunit spp27-like isoform X1 [Nicotiana sylvestris] >XP_016443901.1 PREDICTED: upstream activation factor subunit spp27-like isoform X1 [Nicotiana tabacum]) HSP 1 Score: 126.3 bits (316), Expect = 1.400e-25 Identity = 78/250 (31.20%), Postives = 117/250 (46.80%), Query Frame = 0 Query: 12 KEEEDMPVAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQAL--IGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGR 259 + E M KK GG+NK A S ++ +G + RP+V K +W YI+EK+LQNP ++R ILCD VL +F + I+MF+M K ++KH+ D E + +GGG GF ++S L IG+ +R +V+K++W++IK N++QDPS++ I+CDE K + VDS HGF + KLL HF+ R Sbjct: 105 RRSEKMNGEAKKKGGFNKPCALSPQLQKLVGESELGRPEVVKKIWAYIREKNLQNPQNKRKILCDEVLSEIF-RAKTIDMFQMNKVLSKHIWPIDE---------------------------EDGSFPLTHAASQVKSSVKKRLPKQGREEALDEPKQKEKRHKGGGSGFLAPVRLSDALVKFFGIGENALTRADVIKRIWQYIKENELQDPSDKKTIICDERLKELFQVDSFHGFTVTKLLTAHFIKR 326
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_009774097.1 (PREDICTED: upstream activation factor subunit spp27-like isoform X3 [Nicotiana sylvestris] >XP_016443903.1 PREDICTED: upstream activation factor subunit spp27-like isoform X3 [Nicotiana tabacum]) HSP 1 Score: 126.3 bits (316), Expect = 1.400e-25 Identity = 78/250 (31.20%), Postives = 117/250 (46.80%), Query Frame = 0 Query: 12 KEEEDMPVAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQAL--IGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGR 259 + E M KK GG+NK A S ++ +G + RP+V K +W YI+EK+LQNP ++R ILCD VL +F + I+MF+M K ++KH+ D E + +GGG GF ++S L IG+ +R +V+K++W++IK N++QDPS++ I+CDE K + VDS HGF + KLL HF+ R Sbjct: 105 RRSEKMNGEAKKKGGFNKPCALSPQLQKLVGESELGRPEVVKKIWAYIREKNLQNPQNKRKILCDEVLSEIF-RAKTIDMFQMNKVLSKHIWPIDE-----------------------------------EDASQVKSSVKKRLPKQGREEALDEPKQKEKRHKGGGSGFLAPVRLSDALVKFFGIGENALTRADVIKRIWQYIKENELQDPSDKKTIICDERLKELFQVDSFHGFTVTKLLTAHFIKR 318 The following BLAST results are available for this feature:
BLAST of NO10G02660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G02660 ID=NO10G02660|Name=NO10G02660|organism=Nannochloropsis oceanica|type=gene|length=3230bpback to top protein sequence of NO10G02660.1 >NO10G02660.1-protein ID=NO10G02660.1-protein|Name=NO10G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bpback to top protein sequence of NO10G02660.2 >NO10G02660.2-protein ID=NO10G02660.2-protein|Name=NO10G02660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=384bpback to top protein sequence of NO10G02660.3 >NO10G02660.3-protein ID=NO10G02660.3-protein|Name=NO10G02660.3|organism=Nannochloropsis oceanica|type=polypeptide|length=260bpback to top Synonyms
Publications
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