NO10G02630, NO10G02630 (gene) Nannochloropsis oceanica

Overview
NameNO10G02630
Unique NameNO10G02630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3446
Alignment locationchr10:719790..723235 -

Link to JBrowse

Properties
Property NameValue
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:719790..723235 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO10G02630 vs. NCBI_GenBank
Match: GAX96963.1 (Hypothetical protein PINS_004856 [Pythium insidiosum])

HSP 1 Score: 76.3 bits (186), Expect = 5.400e-10
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 0 
Query:    3 RLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVEMPSDFLGRP--RGFAYVNVADAESA---VRCIKLYNKTVWRGGRLMVEMAGETYMARLQREWAEARGE 102
            R+YVGGL RDV  +E+ + FGR    +    +T +EMP+D L     RGFAY+ +   ++     +  K YN+T WRG  L VE A   Y  RL+ EWA  R E
Sbjct:   16 RMYVGGLARDVTRQELSDRFGR-VATSNQCRLTGIEMPADRLTPTDCRGFAYLTIEGPQATSVMEQIAKAYNRTKWRGSLLRVEPAKPAYQERLEAEWAAVRAE 118
[Close]
BLAST of NO10G02630 vs. NCBI_GenBank
Match: XP_007505872.1 (PREDICTED: nucleolar protein 8 isoform X1 [Monodelphis domestica])

HSP 1 Score: 74.3 bits (181), Expect = 2.100e-9
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 0 
Query:    3 RLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVEMPS--DFLGRP-RGFAYVNVADAESAV-RCIKLYNKTVWRGGRLMVEMAGETYMARLQREWAEARGEWKQ 105
            RL+VGGL   V  ++++    R       GA++ VE+ S  D LG P + FAYVNVA +E+A+ RC+   NKT W+GG L V++A E+++ RL +E  +A+ + +Q
Sbjct:    9 RLFVGGLGPTVTQDDVRAQLSRF------GAVSSVELVSRVDVLGNPEKTFAYVNVALSEAALQRCLSALNKTAWKGGTLQVQLAKESFLHRLAKERQQAKAKQEQ 108
[Close]
BLAST of NO10G02630 vs. NCBI_GenBank
Match: XP_020662273.1 (nucleolar protein 8 [Pogona vitticeps])

HSP 1 Score: 73.9 bits (180), Expect = 2.700e-9
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 0 
Query:    3 RLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVEMPS--DFLGRP-RGFAYVNVADAESAV-RCIKLYNKTVWRGGRLMVEMAGETYMARLQREWAEA 99
            RLYVGGL   +  EE++E FG+       G +T +E+ +  D  G P + FAY+NV+ +E  + +CI + NKT W+GG L +E+A E+++ RL RE  EA
Sbjct:    9 RLYVGGLGHTISEEELQERFGKF------GKVTGIEIVTRKDERGNPTKTFAYINVSLSEKELKKCISVLNKTKWKGGILQIELAKESFLHRLSRERQEA 102
[Close]
BLAST of NO10G02630 vs. NCBI_GenBank
Match: POM63817.1 (hypothetical protein PHPALM_20734, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 73.6 bits (179), Expect = 3.500e-9
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 0 
Query:    3 RLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVEMP-----SDFL---GRPRGFAYVNV--ADAES-AVRCIKLYNKTVWRGGRLMVEMAGETYMARLQREWAE 98
            R+YVGGL  D K +E++E FGR    A    +T+VE+P      +F+   G  RGFAY+ +  ADAE+ + R  K +N+T WRG  L V +A   +  +LQ+EW E
Sbjct:    5 RVYVGGLPLDAKNQELRERFGRFVSSATDCQLTDVELPKPKRMGNFVASAGTSRGFAYLTLQGADAETESERLQKTFNRTKWRGSVLKVHLAKPHFKLKLQQEWEE 110
[Close]
BLAST of NO10G02630 vs. NCBI_GenBank
Match: POM66189.1 (Hypothetical protein PHPALM_17991 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 73.6 bits (179), Expect = 3.500e-9
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 0 
Query:    3 RLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVEMPSD--------FLGRPRGFAYVNV--ADAES-AVRCIKLYNKTVWRGGRLMVEMAGETYMARLQREWAE 98
            R+YVGGL  D K +E++E FGR    A    +T+VE+P            G  RGFAY+ +  ADAE+ + R  K +N+T WRG  L V +A   +  +LQ+EW E
Sbjct:    5 RVYVGGLPLDAKNQELRERFGRFVSNATDCQLTDVELPKPKRMGNVVASAGTSRGFAYLTLQGADAETESERLQKTFNRTKWRGSVLKVHLAKPHFKLKLQQEWEE 110
[Close]
BLAST of NO10G02630 vs. NCBI_GenBank
Match: XP_016608919.1 (hypothetical protein SPPG_03981 [Spizellomyces punctatus DAOM BR117] >KND00880.1 hypothetical protein SPPG_03981 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 73.2 bits (178), Expect = 4.600e-9
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 0 
Query:    3 RLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVEMPSDF-LGRPRGFAYVNVADAESAV-RCIKLYNKTVWRGGRLMVEMAGETYMARLQREWAEAR 100
            RLYVGGL+ DV   +++  F         G +  V++P    LG  RGF ++ +    SA+ RC+ LYN T W+G +L +E A + YM RL+REWAE +
Sbjct:   20 RLYVGGLKYDVDKADLEARF------KSFGNVLSVDLPGGGPLGGSRGFGFIGLETTPSALARCLTLYNGTKWKGMQLHIEEAKQDYMTRLKREWAEKK 112
[Close]
BLAST of NO10G02630 vs. NCBI_GenBank
Match: ORX48154.1 (hypothetical protein BCR36DRAFT_355054 [Piromyces finnis])

HSP 1 Score: 72.8 bits (177), Expect = 6.000e-9
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 0 
Query:    3 RLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVEMPSDFL-GRPRGFAYVNVADAE-SAVRCIKLYNKTVWRGGRLMVEMAGETYMARLQREW 96
            RL++GG+  D   +++   F R       G I  V++P D L GRP+GF Y+++   E S  RC+ L NKT WRG  L +E A   YM RL+ EW
Sbjct:    8 RLFIGGIADDCTEKDLNGRFERF------GKILTVDIPQDSLSGRPKGFGYISIKITEQSYKRCVSLLNKTKWRGKELKIEEAKPDYMQRLRNEW 96
[Close]
BLAST of NO10G02630 vs. NCBI_GenBank
Match: XP_008103393.1 (PREDICTED: nucleolar protein 8 [Anolis carolinensis] >XP_008103394.1 PREDICTED: nucleolar protein 8 [Anolis carolinensis])

HSP 1 Score: 72.4 bits (176), Expect = 7.800e-9
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 0 
Query:    3 RLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVEMPSDFLGRP-RGFAYVNVADAESAV-RCIKLYNKTVWRGGRLMVEMAGETYMARLQREWAEA 99
            RLYVGGL   V   E++E F    G+ G    TE+    D  G P + FAY+N+  +E  + +CI + NKT W+GG L +EMA E+++ RL RE  EA
Sbjct:   16 RLYVGGLGHTVSKVELQERF----GKFGNVTDTEILTRKDEQGNPTKTFAYINIKISEKELKKCISVLNKTKWKGGTLQIEMAKESFLHRLARERQEA 109
[Close]
BLAST of NO10G02630 vs. NCBI_GenBank
Match: XP_007055643.1 (PREDICTED: nucleolar protein 8 [Chelonia mydas])

HSP 1 Score: 72.0 bits (175), Expect = 1.000e-8
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 0 
Query:    1 MARLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVE--MPSDFLGRP-RGFAYVNVADAESAV-RCIKLYNKTVWRGGRLMVEMAGETYMARLQREWAEAR 100
            + RLYVGGL   V   E++E F +       G +T+VE  +  D  G P + FAY+N++ +E+ + RC+ + NKT W+GG L +E+A E+++ RL +E  EAR
Sbjct:    7 LKRLYVGGLGHTVSEAELQERFSKF------GNVTDVEIVIRKDEQGNPVKTFAYINISISEADLKRCMSILNKTRWKGGTLQIELAKESFLHRLAQERQEAR 103
[Close]
BLAST of NO10G02630 vs. NCBI_GenBank
Match: XP_013973574.1 (nucleolar protein 8 isoform X1 [Canis lupus familiaris])

HSP 1 Score: 72.0 bits (175), Expect = 1.000e-8
Identity = 40/103 (38.83%), Postives = 66/103 (64.08%), Query Frame = 0 
Query:    3 RLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVEMPS--DFLGRP-RGFAYVNVADAESAV-RCIKLYNKTVWRGGRLMVEMAGETYMARLQREWAEARGE 102
            RL+VGGL RDV + ++++ F R       G ++EVEM +  D  G P + FAY+N+  AE  + +C+ + NKT W+GG L +++A E+++ RL +E  EA+ +
Sbjct:    9 RLFVGGLGRDVTSADLRDRFSRF------GDVSEVEMITRRDDQGNPQKVFAYINIRVAEENLNKCMSILNKTKWKGGTLQIQLAKESFLHRLAQEREEAKAK 105
The following BLAST results are available for this feature:
BLAST of NO10G02630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX96963.15.400e-1041.35Hypothetical protein PINS_004856 [Pythium insidios... [more]
XP_007505872.12.100e-940.57PREDICTED: nucleolar protein 8 isoform X1 [Monodel... [more]
XP_020662273.12.700e-942.00nucleolar protein 8 [Pogona vitticeps][more]
POM63817.13.500e-941.51hypothetical protein PHPALM_20734, partial [Phytop... [more]
POM66189.13.500e-940.57Hypothetical protein PHPALM_17991 [Phytophthora pa... [more]
XP_016608919.14.600e-940.40hypothetical protein SPPG_03981 [Spizellomyces pun... [more]
ORX48154.16.000e-941.05hypothetical protein BCR36DRAFT_355054 [Piromyces ... [more]
XP_008103393.17.800e-942.86PREDICTED: nucleolar protein 8 [Anolis carolinensi... [more]
XP_007055643.11.000e-839.81PREDICTED: nucleolar protein 8 [Chelonia mydas][more]
XP_013973574.11.000e-838.83nucleolar protein 8 isoform X1 [Canis lupus famili... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02630.1NO10G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|418944gene_3948Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02630.1NO10G02630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02630 ID=NO10G02630|Name=NO10G02630|organism=Nannochloropsis oceanica|type=gene|length=3446bp
ACACAGATAGAGGCACCACGACATACCTTGACGCTTCGTTGCCCTCTGTA
CTCATGGCCAGGCTCTATGgtacgtccttttcctttcccataaatacccc
tcatctaagagtccgacctccccacccccaacccaaccactactcaatac
ttcttcccattcctcctcctagTCGGCGGCCTACGCCGGGATGTGAAAGC
CGAAGAAATTAAGGAGAGTTTTGGGCGGGCCACAGGAAGGGCGGGTCCCG
GGGCAATCACCGAGGTGGAGATGCCCTCCGATTTCCTAGGGCGCCCGAGG
GGGTTTGCATACGTCAATGTGGCAGACGCCGAGAGCGCGGTCCGATGCAT
CAAGCTATACAATAAGACGGTGTGGCGTGGTGGGCGATTGATGGTGGAGA
TGGCGGGGGAGACTTATATGGCTCGGTTGCAGCGAGAGTGGGCGGAGGCC
AGGGGGGAGTGGAAGCAGGAGAAGATGGAGGAGGAGCAGGAAGAGATCAT
GCAAGTGGCACCACCCACGCAGGAAGGAGAGGAAGAGAAGGGAAAAGAGC
AACAATTCAATAAAGGAGAAACTGTAGCGTTCGCTCCCGTGAACGAGAAA
TCCTTTCGGTACTTGCGCATTCGAAAACGAGCGGGTGAAAAGGCCGTGGT
AGTAGACACGTTGCCCGTCCTGTTAACCGGGGAGGCCATGGGACAGGGGA
GAAAACGCCCAAGACGTCGAGGAGTCAAAGTTGTAACATTTAACAGGGCG
GCCACGGAGGGGGAGAAGTCTCTGAGAGAGATCTGGGCGGGGGTGGCGGC
TGCTGCGCTTTTGCCCCAGGTAGTTCCACGTGCTGCTGTCGCGACTGCTC
CTGCTTGTGCTGTGCCTCAGGCTGCAGCTTCTGGTGTTACTCAAATGAAG
GAGGATAAATGTATCGACGTGAGAGAGGAAGAGGAGGAGGAAGAGGAGGA
GGAAGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAAGTAGTAG
ATGTGGGGTTGATTCACAACGGGAACAAAGAGAGTGAGTGGAAAGGGCAG
GAGAAAGAGGAAATAGATGAGCAACATAAGGTAATGGAAACAGGAGACAG
AAGTAAGGGGGGAGAGGAAGAATTGGTTGTAAAGGAGGAGGAGGAGGAGG
AGGAGGAGAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGCAGGAGCAGGAG
GAAAGGGAGGAAGCGGAGAAAGTGGAAGGGAAGGGCGTTATGAATGTAGC
AAATTTGCTTGAGGAAGATGGGGAAGATGTTGAATTTAGTTGGGGGGAGG
GCGAAGAGGTCGAGGGGGAAAGAGGGGGAAGGGAGGAGGAGGAGGAGGAG
GAGGAAGAAGAGGAAGACGGAGAAGAATGGCACGTGGGAGAAGTAGGCGT
TGAAAGTGAAGAGGAGGAGGAAGAGGATGAGGATGAGGAGAAGGAGGGCG
CAGTGTTGGAGGACGGGGGGCTGCCTCCTTATTTGGAGAAGGCGGCTGAC
ATGCGCAGCGACAACGATGACGATAACGATAATGATCCCGTTTTGTCTTT
TAAAGACACATCAGTGGCAGCAGCAGTGGTAGTAGCAGCAGCAGCAACAA
CAACCACAGAGGGAAATGAGGAGGAGGAGGAGGCGGAGGAAGCGGTGGAA
CAACGTCGCCAGGAGGAGGAGCGGAACCGCCTCATCATGTCGCAAGTCCT
CTCATCTTTAGAAGAAGAAAATGCCTTAGTCGTCAAGAAGGAAATCCGTC
GAGCCGAAAACCTCAAGGCACGGGAACAGAGGGATGCAGCCGGCCTTCCC
TCCATCCCTCGTTACGACCCGACAAGTGACGCAGCCGCCGAATTCGAAGT
AGGAAGAGAGGGAGAAGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTT
CTCATCCTCCTCCTGTAGCAACGGCCGTTAGGAAGGGGGAAAAGGAGCTA
CCAGCAGCAGAGGCGGATGTTAGGGCATTGACGAGCATCTATCGCCAGTT
TCGCGCGGAGGAAGGGCAGGAACCGCTGCCGATCGGGGCGCAGGAATCGG
TGCCGTTTACATTCGGGTTTGAATTTGGATTTGACGCTGCTGCTGCCCCT
GCCCCTGCCCCTGCTTCTGCTTCTACTCCTTCTACTGCTGCTGCTGGTTG
TGGTGAGGAGGAGGAGGAATGGATATATGAGAGTTTTAGTTGTGGTGTCC
CTCCTGCTGCTACAGTGATGACAGCATCAGCAGCAGCAACAGTAGAGCGA
CCAGAAGTGAAGACGGCAAAGAAGAAGGAGATGAAGAAGAAGGATGTCCC
TACACGGGAGGAAGAAGAAGAATGTGAGGAGGCCGTTGAACCCGTAGGGG
AGGAGGAGGAGGGGGGAAAGGGCGAAGAAGGGAGGGAGGAAGGCAGGCGG
AACCTCGAAGCTGCTGCTGCTCGGATGCTGACGTGGCAGGGCCCGGAGAG
GGTGTCGGTGCTGTGGCCGACATTAGAGGAGCTTAAGACAACGGCAATGG
CTTTTTTTGGGGGAGGGGGAGGAGGAGGAGGAGGGAAGGAGGGGAGAAAT
TATTGTAGTCAGAATGCGGCTGATGGCAGGGATGGTCGGCACCAGAGTGG
AGGGAGAGGGGAAGGAAGAAGAAAAGGAAGAGACGAAGGAGGAAGAGAAG
GAGGAGGAGGGAGGCAGGAAGTGGATGAGGGGTGGAAGAAGGAGAGGCAT
AACCTGGCGCAGGATTTTAAAAGGAAACGACGCAATGCTCTGAAGGGGGG
GAGTCGACCTAACAAACGATGATGAAACCTCCCCCTTCCTCCTCCTCCTT
CTCCTTCCCTCCCCCCGTCACATGCCATTTTCCTCTGTCATTTAAGAGAT
GAAAATGGCAACGATCATAAATGCGATCAATGTAAAACTGAAACTATAAA
AGGAGACCAAAGCCAATTCCCAACGATCACAATTCATTATAGATAGAATA
AAGAGAGAAACACATCACTAGATATAGAAGACACAGGAAAAGTACGCGAC
CTACCATAGGTTCAGTTAGTGGGAGCTGAGTATAAATTGCCCCCCCCAGA
CACCACGATTAAAAATCAAATCGAGGTATTCCTCTGCCTTGTGAACGGAA
AAGCAAACCGCCATACGTCCCATGCCCCTTTACTTTCCGAGTCCTACTAT
TCTGAAGTCTACACATGAATGGTTTCGGTTAGGGTTGTTCATTTCTTGTT
AGTCGTTTATAACCCCCCTCTAAATTACATTCCTCACTAAGCTTCTTATT
TCTTACCCCACCCTAAATTACATTCCTCACTTAGCTTCAAATCCTTCATC
TCCTCCTCGGGCACCCAAGCAACCACACTTCGTCCCTCCCTCCCTCCCTC
ATCCCCTGTCTCCCTTTCTCCCCTCTCTAATCTCCCATCTCCTCCCCCTA
ATACCCCATCTCCTTCACCAACGCCGCATAGGACGCCAAGTCCTCC
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protein sequence of NO10G02630.1

>NO10G02630.1-protein ID=NO10G02630.1-protein|Name=NO10G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=872bp
MARLYVGGLRRDVKAEEIKESFGRATGRAGPGAITEVEMPSDFLGRPRGF
AYVNVADAESAVRCIKLYNKTVWRGGRLMVEMAGETYMARLQREWAEARG
EWKQEKMEEEQEEIMQVAPPTQEGEEEKGKEQQFNKGETVAFAPVNEKSF
RYLRIRKRAGEKAVVVDTLPVLLTGEAMGQGRKRPRRRGVKVVTFNRAAT
EGEKSLREIWAGVAAAALLPQVVPRAAVATAPACAVPQAAASGVTQMKED
KCIDVREEEEEEEEEEEEEEEEEEEEEEEVVDVGLIHNGNKESEWKGQEK
EEIDEQHKVMETGDRSKGGEEELVVKEEEEEEEEKEEEKEEEEEQEQEER
EEAEKVEGKGVMNVANLLEEDGEDVEFSWGEGEEVEGERGGREEEEEEEE
EEEDGEEWHVGEVGVESEEEEEEDEDEEKEGAVLEDGGLPPYLEKAADMR
SDNDDDNDNDPVLSFKDTSVAAAVVVAAAATTTTEGNEEEEEAEEAVEQR
RQEEERNRLIMSQVLSSLEEENALVVKKEIRRAENLKAREQRDAAGLPSI
PRYDPTSDAAAEFEVGREGEVAAAAAAAAASSHPPPVATAVRKGEKELPA
AEADVRALTSIYRQFRAEEGQEPLPIGAQESVPFTFGFEFGFDAAAAPAP
APASASTPSTAAAGCGEEEEEWIYESFSCGVPPAATVMTASAAATVERPE
VKTAKKKEMKKKDVPTREEEEECEEAVEPVGEEEEGGKGEEGREEGRRNL
EAAAARMLTWQGPERVSVLWPTLEELKTTAMAFFGGGGGGGGGKEGRNYC
SQNAADGRDGRHQSGGRGEGRRKGRDEGGREGGGGRQEVDEGWKKERHNL
AQDFKRKRRNALKGGSRPNKR*
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Synonyms
Publications