NO10G02580, NO10G02580 (gene) Nannochloropsis oceanica

Overview
NameNO10G02580
Unique NameNO10G02580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2700
Alignment locationchr10:705729..708428 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:705729..708428 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO10G02580 vs. NCBI_GenBank
Match: EWM25473.1 (hypothetical protein Naga_100207g5 [Nannochloropsis gaditana])

HSP 1 Score: 177.6 bits (449), Expect = 1.700e-40
Identity = 200/473 (42.28%), Postives = 230/473 (48.63%), Query Frame = 0 
Query:    1 MNCSAQHFVAVVASWLTSVADPFSSXXXXXXXXXXXXXXXXYAFHHSTPSAGEVAAASTAATEAHLQCGDSPRLPCGGLVEAEATVGAKRVGEYLVRLLDGEPLSVPSSTSSSXXXXXXXXXSSPSRLLQETALFGWVPAHAFVRRNMNASLFRGVSPADDAGEEEGR-EEGVRIEVGGGSGAGFQVFCEDIXXXXXXXXXXXXXXXRLVPGXXXXXXXXXXXXXXXXXXR--YALSTSKDGGAINTKXXXXXXXXXXXXXXXXXXXXXXDKHTELLWPFCRLGNWTSVGGGGGCGTLNFNHNNELDAVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILCGQELDAENIPSDAMEGKKRFQK----LRETLQCCLREGYTLRAVXXXXXXXXXXXXXEKAQMGYGFSFEVVLQQQQMKGGEGEAGEVSGRKKTNEIGKKGGRKVGGR 467
            +NCSAQHFVAVVASWL + + P +S                Y  HHS PS GE AAA+ A  E+  QCG+ PRL CG LVE EAT+GAKR+GEYLVRLL GE LS PS+                  LLQET+ FGW+PAHAFV+R++  +    V      G+E+ +  +  RIE GGGSGAGFQV+C    XXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXX R    LS  +D                              +  +      RLG WTSVGGGGGCGT                                                                  ILCGQ LDA         GKK   K    L  TLQ CLREG  LR  XXXXXXXXXXX  E  Q+GYGFSFEVVL++     G G A    GR+      + GGR + GR
Sbjct:   15 LNCSAQHFVAVVASWLVTASTPSTS---QNTIEFPTYMSFNYTMHHSPPSLGEKAAAAEALAESQTQCGNVPRLACGALVEDEATIGAKRLGEYLVRLLRGESLSAPST------------------LLQETSAFGWLPAHAFVQRHLGEA--DHVHSWPKMGKEQLKPRKAFRIEGGGGSGAGFQVYCGRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRCLEGLSGEEDDAV--------------GKGEKRGNVREAGEQQKQKISLNRLGKWTSVGGGGGCGT--------------------ERGGTERLHVAGLGREESQQGQNPRRAYASQSDGGSHPSNATGDVGILCGQALDA------GTPGKKELDKGARALAATLQWCLREGQALRMTXXXXXXXXXXXCCEPMQLGYGFSFEVVLER-----GGGRARRGEGREP-----RWGGRGLEGR 414
The following BLAST results are available for this feature:
BLAST of NO10G02580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25473.11.700e-4042.28hypothetical protein Naga_100207g5 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001123NSK001123Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02580.1NO10G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100207g5gene5030Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02580.1NO10G02580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02580 ID=NO10G02580|Name=NO10G02580|organism=Nannochloropsis oceanica|type=gene|length=2700bp
ATGAACTGCAGTGCCCAGCATTTCGTTGCCGTCGTGGCGTCGTGGCTGAC
GTCTGTGGCTGACCCCTTCTCATCTTCCTCCTCTTCCTCGTCCTCCCATG
ACCCCGCCTCCCTCTCCTTTTCCTATGCCTTTCATCACTCCACTCCCTCA
GCCGGAGAAGTCGCCGCGGCCAGTACAGCCGCCACCGAGGCCCACTTACA
GTGCGGGGACAGCCCACGACTGCCATGTGGAGGCTTGGTCGAAGCTGAGG
CTACTGTGGGGGCCAAGCGCGTGGGCGAGTACTTGGTGAGGTTACTAGAT
GGAGAGCCCTTGTCAGTACCGTCCTCCACCTCCTCTTCCTCCTCATTCCC
TTCATCATTGTTGTCATCTTCTCCCTCGAGGCTACTGCAAGAGACTGCAT
TGTTTGGTTGGGTCCCTGCACATGCCTTTGTCAGACGGAATATGAATGCC
TCCCTTTTTCGGGGAGTTTCTCCCGCAGACGATGCAGGCGAGGAGGAAGG
GAGGGAGGAAGGGGTGCGAATTGAAGTGGGTGGAGGAAGCGGGGCTGGCT
TCCAGGTGTTTTGTGAGGACATACTTTTGGTGATGGCTGGTGGGGGAGGA
GGAGGAGGGGTAGAGGGAAGGCTGGTGCCTGGAGGGGAGGGGGTGACTTT
CTCAGTGGGTGGTGGTGGAGGAGGAGGTGCACAATTTCGATATGCCTTAA
GCACAAGCAAGGACGGAGGAGCAATTAATACGAAAAGCAGCAGTAGTAGC
AGCAGCAACAGCAGCAACAGCAGCAACAGCAAAAGTGGAAACGCTGGGAA
GGACAAGCACACGGAGCTGCTATGGCCGTTCTGTCGTCTGGGGAATTGGA
CGTCTGTCGGTGGTGGGGGTGGATGCGGCACTCTTAACTTCAATCATAAT
AACGAACTTGATGCGGTCGATAAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAACAAAAACGAAAAGAACGACCTATGTCGTCGCCCCCAGAAGAAG
CAAACGAGAAGACCTCAAGGCCTCCTCCTTCTTCCCTCACTTCTCTTCCT
CCGCCTCCTCCACCTCACCCTCCTGTCACCATCCTATGCGGCCAAGAGCT
CGACGCCGAGAACATCCCAAGTGATGCAATGGAGGGGAAGAAAAGATTCC
AAAAATTACGGGAAACACTTCAGTGTTGCCTAAGAGAGGGCTACACGCTC
CGAGCGGTAGGAGGGGGAGGAGGGGGTGGGGGAACTGCGGAGTGCTGTGA
GAAGGCACAGATGGGGTATGGATTTTCCTTTGAGGTGGTGTTGCAGCAGC
AACAGATGAAAGGTGGAGAAGGAGAAGCAGGAGAAGTATCTGGGAGGAAG
AAGACGAATGAGATTGGTAAGAAAGGAGGGAGGAAGGTGGGAGGGAGGAA
AGAAAAGATGAAGCCTAAGCATGGGGACGGGAGCGTAACGCATGAAGAGC
ACCGGCAGCATCGTATGCAAGAAGAGCTAGCACCACCACCACCGCCAGCA
GCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAC
ACCACCACCACCACCACCAACAACAACAACAACATTAGCAGCAGCATTAC
CCTACAGTAGCAGCACCACCACGACCAATCCTGACGCCGCTGCAACTGCT
GCTTCTATTGGTGACGCTGCCACCAATGGGACTGAGGAAGGCGACGACAA
CAATGACGACGACGATGCATCAACAGCTGCCCTCAACGCCCAACTTCGCT
ACGACCCTCTCTTCAAGTACCTCCATCAAGCCGCCCTTTCCTGTCCCGGG
GGATTTCAAGATTGGTGCTGTGTCTGCACACGAGCCAAAAACATGATAAT
CCAGATTCAAGAAGAGAAGGGAAAGACGGAGGAAGAGGGGGAGCGGATGA
AGAATAGCAACGTGGCCTGGTTTGCGAATGTTACCTGCTGTAGGAGAAAA
GGGGATACAGCTGTCGCTCCTGCTGATCCTGCTGCTTCTGCTTTGTCGCC
AATAGCAGGGAGCACCCACCCTTGGCACCCTGAGGACGACCTTCCATTTT
ATCCGCCACCGCGCCCTTTAACCGGCGCTGCTGCTGCTGCTGCTGCTGCC
GCTGCTTCTGGAAGGAGGCGGGAAAGAGTAGGATGTGCGCTGCAAATGGA
TGAGAGAAGGGGAGGGTTGATGGTTATTGCTGCTGCTGCTCCTGTAACTA
CTGCTGCTGCTTCTGCTTTACTCGAGATGAAAGAAGAAAGAGAGCAAGCG
ACTCTTTGGCAGATTGGCGCGGACAGAAAGCATTTATCTCCGCTTTCCTC
CTCTTCTCTCCCTTCCTCTTACTCCTCATCCTCGTCCTCGTCGACGACGA
CGGTGGGATCCGTGAGTACGTGGACGTGTTTCCTAATCTTGAGCAGTCTC
CTTCTGGTGATGGGTGGCGTCGTCCTCAGCTGGCGCGTGCACCAAGGGAG
GATAAAGAGAGAGAAAGAGGGCGTGAGAAACGAAGAGGACGGGGAGGAAG
GAGAAAGTGCTCATTTGATGTTGCGTGTTTGGCCCCAGAAGCAGATATAT
GATGCTCTTTGATATATCTATTTATGCGCTTAAAGCAGAAGACAAAGACG
AAATGTATAGATTGAAATGCTTGAGAAATATACCACGACGCTGGCCATGT
GCCCGAAGCCCTGCGACAAGGGAAATGAATAAATTATGTCATACCGAGGA
back to top

protein sequence of NO10G02580.1

>NO10G02580.1-protein ID=NO10G02580.1-protein|Name=NO10G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=854bp
MNCSAQHFVAVVASWLTSVADPFSSSSSSSSSHDPASLSFSYAFHHSTPS
AGEVAAASTAATEAHLQCGDSPRLPCGGLVEAEATVGAKRVGEYLVRLLD
GEPLSVPSSTSSSSSFPSSLLSSSPSRLLQETALFGWVPAHAFVRRNMNA
SLFRGVSPADDAGEEEGREEGVRIEVGGGSGAGFQVFCEDILLVMAGGGG
GGGVEGRLVPGGEGVTFSVGGGGGGGAQFRYALSTSKDGGAINTKSSSSS
SSNSSNSSNSKSGNAGKDKHTELLWPFCRLGNWTSVGGGGGCGTLNFNHN
NELDAVDKQQQQQQQQQQQQKRKERPMSSPPEEANEKTSRPPPSSLTSLP
PPPPPHPPVTILCGQELDAENIPSDAMEGKKRFQKLRETLQCCLREGYTL
RAVGGGGGGGGTAECCEKAQMGYGFSFEVVLQQQQMKGGEGEAGEVSGRK
KTNEIGKKGGRKVGGRKEKMKPKHGDGSVTHEEHRQHRMQEELAPPPPPA
ATAAAAAAAAAAAATTTPPPPPPTTTTTLAAALPYSSSTTTTNPDAAATA
ASIGDAATNGTEEGDDNNDDDDASTAALNAQLRYDPLFKYLHQAALSCPG
GFQDWCCVCTRAKNMIIQIQEEKGKTEEEGERMKNSNVAWFANVTCCRRK
GDTAVAPADPAASALSPIAGSTHPWHPEDDLPFYPPPRPLTGAAAAAAAA
AASGRRRERVGCALQMDERRGGLMVIAAAAPVTTAAASALLEMKEEREQA
TLWQIGADRKHLSPLSSSSLPSSYSSSSSSSTTTVGSVSTWTCFLILSSL
LLVMGGVVLSWRVHQGRIKREKEGVRNEEDGEEGESAHLMLRVWPQKQIY
DAL*
back to top
Synonyms
Publications