NO10G02500, NO10G02500 (gene) Nannochloropsis oceanica

Overview
NameNO10G02500
Unique NameNO10G02500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length869
Alignment locationchr10:672828..673696 +

Link to JBrowse

Properties
Property NameValue
Description60s ribosomal protein l44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:672828..673696 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR000552Ribosomal_L44e
Homology
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_024579303.1 (60s ribosomal protein l44 [Plasmopara halstedii] >CEG42934.1 60s ribosomal protein l44 [Plasmopara halstedii])

HSP 1 Score: 174.9 bits (442), Expect = 1.300e-40
Identity = 82/104 (78.85%), Postives = 97/104 (93.27%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKER+TFCK KKC+KHTVHK+TQYKAGKAS YAQG RRY++KQ+G+GGQTKP+ HKKAKTTKK+TLR+ECK+CK KKQL +KRTKHFELGEKKK++GHQY
Sbjct:   65 MVNMPKERRTFCKDKKCRKHTVHKITQYKAGKASKYAQGARRYNQKQKGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPMKRTKHFELGEKKKSAGHQY 168          
BLAST of NO10G02500 vs. NCBI_GenBank
Match: GAY04162.1 (60S ribosomal protein L44 putative [Pythium insidiosum])

HSP 1 Score: 173.3 bits (438), Expect = 3.900e-40
Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTS-GHQY 105
            MV +PKER+TFCKGKKC+KHTVHK++QYK+GKAS YAQG RRY+ KQ+G+GGQTKPI HKKAKTTKK+TLR+ECK+CKTKKQL IKRTKHFELGEKKKTS GH Y
Sbjct:    1 MVNMPKERRTFCKGKKCQKHTVHKISQYKSGKASKYAQGARRYEAKQKGFGGQTKPIFHKKAKTTKKITLRMECKECKTKKQLPIKRTKHFELGEKKKTSAGHTY 105          
BLAST of NO10G02500 vs. NCBI_GenBank
Match: CCA19132.1 (60S ribosomal protein L44 putative [Albugo laibachii Nc14])

HSP 1 Score: 172.9 bits (437), Expect = 5.100e-40
Identity = 82/104 (78.85%), Postives = 95/104 (91.35%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKER+T+CKGKKC+KHTVHK+TQYKAGKAS YAQG RRY  KQ+G+GGQTKPI HKKAKTTKK+TLR+ECK+CKTKKQL +KRTKHFELGEKK ++GH Y
Sbjct:    1 MVNMPKERRTYCKGKKCQKHTVHKITQYKAGKASKYAQGARRYKEKQKGFGGQTKPIFHKKAKTTKKITLRMECKECKTKKQLPMKRTKHFELGEKKSSAGHTY 104          
BLAST of NO10G02500 vs. NCBI_GenBank
Match: CBJ32132.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 172.6 bits (436), Expect = 6.700e-40
Identity = 84/104 (80.77%), Postives = 94/104 (90.38%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKER+T+CK K+C KHTVHKVTQYK+GKASN+AQGKRRYD KQ+G+GGQTKPI HKKAKTTKKVTLRLECK CK KKQLVI R KHFELGEKK+ +GHQY
Sbjct:   35 MVNVPKERRTYCKDKRCNKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKLCKAKKQLVIARCKHFELGEKKQATGHQY 138          
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_002290188.1 (RL44, ribosomal protein 44 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >EED91940.1 RL44, ribosomal protein 44 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 170.2 bits (430), Expect = 3.300e-39
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKERKTFC GKKC+KH VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK CK KK L +KRTKHFELG KK  SGHQY
Sbjct:    1 MVNVPKERKTFCAGKKCRKHQVHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKTCKQKKHLTLKRTKHFELGAKKAESGHQY 104          
BLAST of NO10G02500 vs. NCBI_GenBank
Match: GBG28330.1 (60S ribosomal protein L44 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 168.7 bits (426), Expect = 9.600e-39
Identity = 82/102 (80.39%), Postives = 93/102 (91.18%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGH 103
            +V +PKER+TFCKG KC+KHTVHKVTQYKAGKASN+AQGKRRYDRKQ+GYGGQTKPI HKKAKTTKKVTLRLECK+CKTK Q+ +KR K FELG+KK+  GH
Sbjct:   43 IVNVPKERRTFCKGSKCRKHTVHKVTQYKAGKASNFAQGKRRYDRKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKTKCQIGLKRCKTFELGQKKEAGGH 144          
BLAST of NO10G02500 vs. NCBI_GenBank
Match: EJK44538.1 (hypothetical protein THAOC_36912 [Thalassiosira oceanica])

HSP 1 Score: 166.4 bits (420), Expect = 4.800e-38
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKERKT+C   KC+ H VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+KV LRLECK CKTKKQL +KRTKHFELG KK  +GHQY
Sbjct:    1 MVNVPKERKTYCASSKCRNHQVHKVTQYKAGKASNFAQGKRRYDTKQMGFGGQTKPVFHKKAKTTRKVVLRLECKKCKTKKQLTLKRTKHFELGAKKADTGHQY 104          
BLAST of NO10G02500 vs. NCBI_GenBank
Match: OEU13448.1 (Ribosomal_L44-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 164.9 bits (416), Expect = 1.400e-37
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKERKT+C G KCKKH++HKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK CKTKKQL  KRTKHFELG+K   SGHQY
Sbjct:    1 MVNVPKERKTYCAG-KCKKHSLHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKKCKTKKQLCHKRTKHFELGQKAAASGHQY 103          
BLAST of NO10G02500 vs. NCBI_GenBank
Match: GAX23388.1 (large subunit ribosomal protein L44e [Fistulifera solaris] >GAX22997.1 large subunit ribosomal protein L44e [Fistulifera solaris])

HSP 1 Score: 164.5 bits (415), Expect = 1.800e-37
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKERKT+C G KCKKH VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK CKTKKQL +KRTKHFELG+K   +GHQ+
Sbjct:    1 MVNVPKERKTYCAG-KCKKHAVHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKTCKTKKQLCLKRTKHFELGQKAAPTGHQF 103          
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_002179101.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49799.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 162.9 bits (411), Expect = 5.300e-37
Identity = 82/101 (81.19%), Postives = 88/101 (87.13%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSG 102
            MV +PKERKT+C G KCKKH  HKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+KV LRLECK CKTKKQL IKRTKHFELGEK K SG
Sbjct:    1 MVNVPKERKTYCAG-KCKKHAAHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKVVLRLECKKCKTKKQLCIKRTKHFELGEKAKQSG 100          
The following BLAST results are available for this feature:
BLAST of NO10G02500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024579303.11.300e-4078.8560s ribosomal protein l44 [Plasmopara halstedii] >... [more]
GAY04162.13.900e-4080.9560S ribosomal protein L44 putative [Pythium insidi... [more]
CCA19132.15.100e-4078.8560S ribosomal protein L44 putative [Albugo laibach... [more]
CBJ32132.16.700e-4080.77conserved unknown protein [Ectocarpus siliculosus][more]
XP_002290188.13.300e-3978.85RL44, ribosomal protein 44 60S large ribosomal sub... [more]
GBG28330.19.600e-3980.3960S ribosomal protein L44 [Aurantiochytrium sp. FC... [more]
EJK44538.14.800e-3876.92hypothetical protein THAOC_36912 [Thalassiosira oc... [more]
OEU13448.11.400e-3777.88Ribosomal_L44-domain-containing protein [Fragilari... [more]
GAX23388.11.800e-3776.92large subunit ribosomal protein L44e [Fistulifera ... [more]
XP_002179101.15.300e-3781.19predicted protein, partial [Phaeodactylum tricornu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001115NSK001115Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02500.1NO10G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585979gene_3963Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g5gene5039Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02500.1NO10G02500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02500 ID=NO10G02500|Name=NO10G02500|organism=Nannochloropsis oceanica|type=gene|length=869bp
ATGGTGTGCATCCCCAAAGAGCGCAAGACCTTTTGTAAGGGCAAGAAGTG
CAAGAAGCACACCGTCCACAAGGTCACGCAGTACAAGGCCGGCAAGGCCT
CCAACTACGCGCAGgtacgtagtcatgcttgatggagggaagtggaaaag
tatgaagggaaggtgtttgggaaagaagttgtggttgaaatcgaggacga
ttgcttccgcatttggcatggcgtctatgaagtagtagtcctgttctcgt
caaccggagcctgcctcagttgcgcacagaacaaagccgacccggtggca
gaagcctcagggcatctgagggaataagattaacgttactgatcatgggc
gtcgatgctgtcgggactggctgtacccatagttttgctcgagaggcgcg
ccaatgtattgcgcttatcttgggtctgtttgctcggtgacctcacggtg
gggaaggagaagagcatcaaggtcgaaagcgcacgagctgaagatctacg
cagtcgctcctgaagtggaagtatagcgcttagcaaaggctgggtggatt
tttttctgtgttggttttgactcgaattggctggtggtcctgagaatgaa
gacgaacaaataaaactcattacttccttttcttttgctccctctcccca
taccactaaacctaacagGGCAAGCGGCGTTATGACCGAAAGCAGCAAGG
GTACGGCGGGCAGACCAAGCCTATATTGCACAAGAAGGCCAAGACCACCA
AGAAGGTGACCCTGCGCCTCGAGTGCAAGGACTGTAAGACGAAGAAGCAG
CTTGTCATCAAGCGCACCAAGCACTTCGAGCTGGGCGAGAAGAAGAAGAC
CTCCGGTCACCAGTACTAA
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protein sequence of NO10G02500.1

>NO10G02500.1-protein ID=NO10G02500.1-protein|Name=NO10G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGY
GGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTS
GHQY*
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Synonyms
Publications