NO10G02500, NO10G02500 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_024579303.1 (60s ribosomal protein l44 [Plasmopara halstedii] >CEG42934.1 60s ribosomal protein l44 [Plasmopara halstedii]) HSP 1 Score: 174.9 bits (442), Expect = 1.300e-40 Identity = 82/104 (78.85%), Postives = 97/104 (93.27%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105 MV +PKER+TFCK KKC+KHTVHK+TQYKAGKAS YAQG RRY++KQ+G+GGQTKP+ HKKAKTTKK+TLR+ECK+CK KKQL +KRTKHFELGEKKK++GHQY Sbjct: 65 MVNMPKERRTFCKDKKCRKHTVHKITQYKAGKASKYAQGARRYNQKQKGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPMKRTKHFELGEKKKSAGHQY 168
BLAST of NO10G02500 vs. NCBI_GenBank
Match: GAY04162.1 (60S ribosomal protein L44 putative [Pythium insidiosum]) HSP 1 Score: 173.3 bits (438), Expect = 3.900e-40 Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTS-GHQY 105 MV +PKER+TFCKGKKC+KHTVHK++QYK+GKAS YAQG RRY+ KQ+G+GGQTKPI HKKAKTTKK+TLR+ECK+CKTKKQL IKRTKHFELGEKKKTS GH Y Sbjct: 1 MVNMPKERRTFCKGKKCQKHTVHKISQYKSGKASKYAQGARRYEAKQKGFGGQTKPIFHKKAKTTKKITLRMECKECKTKKQLPIKRTKHFELGEKKKTSAGHTY 105
BLAST of NO10G02500 vs. NCBI_GenBank
Match: CCA19132.1 (60S ribosomal protein L44 putative [Albugo laibachii Nc14]) HSP 1 Score: 172.9 bits (437), Expect = 5.100e-40 Identity = 82/104 (78.85%), Postives = 95/104 (91.35%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105 MV +PKER+T+CKGKKC+KHTVHK+TQYKAGKAS YAQG RRY KQ+G+GGQTKPI HKKAKTTKK+TLR+ECK+CKTKKQL +KRTKHFELGEKK ++GH Y Sbjct: 1 MVNMPKERRTYCKGKKCQKHTVHKITQYKAGKASKYAQGARRYKEKQKGFGGQTKPIFHKKAKTTKKITLRMECKECKTKKQLPMKRTKHFELGEKKSSAGHTY 104
BLAST of NO10G02500 vs. NCBI_GenBank
Match: CBJ32132.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 172.6 bits (436), Expect = 6.700e-40 Identity = 84/104 (80.77%), Postives = 94/104 (90.38%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105 MV +PKER+T+CK K+C KHTVHKVTQYK+GKASN+AQGKRRYD KQ+G+GGQTKPI HKKAKTTKKVTLRLECK CK KKQLVI R KHFELGEKK+ +GHQY Sbjct: 35 MVNVPKERRTYCKDKRCNKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKLCKAKKQLVIARCKHFELGEKKQATGHQY 138
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_002290188.1 (RL44, ribosomal protein 44 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >EED91940.1 RL44, ribosomal protein 44 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 170.2 bits (430), Expect = 3.300e-39 Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105 MV +PKERKTFC GKKC+KH VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK CK KK L +KRTKHFELG KK SGHQY Sbjct: 1 MVNVPKERKTFCAGKKCRKHQVHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKTCKQKKHLTLKRTKHFELGAKKAESGHQY 104
BLAST of NO10G02500 vs. NCBI_GenBank
Match: GBG28330.1 (60S ribosomal protein L44 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 168.7 bits (426), Expect = 9.600e-39 Identity = 82/102 (80.39%), Postives = 93/102 (91.18%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGH 103 +V +PKER+TFCKG KC+KHTVHKVTQYKAGKASN+AQGKRRYDRKQ+GYGGQTKPI HKKAKTTKKVTLRLECK+CKTK Q+ +KR K FELG+KK+ GH Sbjct: 43 IVNVPKERRTFCKGSKCRKHTVHKVTQYKAGKASNFAQGKRRYDRKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKTKCQIGLKRCKTFELGQKKEAGGH 144
BLAST of NO10G02500 vs. NCBI_GenBank
Match: EJK44538.1 (hypothetical protein THAOC_36912 [Thalassiosira oceanica]) HSP 1 Score: 166.4 bits (420), Expect = 4.800e-38 Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105 MV +PKERKT+C KC+ H VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+KV LRLECK CKTKKQL +KRTKHFELG KK +GHQY Sbjct: 1 MVNVPKERKTYCASSKCRNHQVHKVTQYKAGKASNFAQGKRRYDTKQMGFGGQTKPVFHKKAKTTRKVVLRLECKKCKTKKQLTLKRTKHFELGAKKADTGHQY 104
BLAST of NO10G02500 vs. NCBI_GenBank
Match: OEU13448.1 (Ribosomal_L44-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 164.9 bits (416), Expect = 1.400e-37 Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105 MV +PKERKT+C G KCKKH++HKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK CKTKKQL KRTKHFELG+K SGHQY Sbjct: 1 MVNVPKERKTYCAG-KCKKHSLHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKKCKTKKQLCHKRTKHFELGQKAAASGHQY 103
BLAST of NO10G02500 vs. NCBI_GenBank
Match: GAX23388.1 (large subunit ribosomal protein L44e [Fistulifera solaris] >GAX22997.1 large subunit ribosomal protein L44e [Fistulifera solaris]) HSP 1 Score: 164.5 bits (415), Expect = 1.800e-37 Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105 MV +PKERKT+C G KCKKH VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK CKTKKQL +KRTKHFELG+K +GHQ+ Sbjct: 1 MVNVPKERKTYCAG-KCKKHAVHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKTCKTKKQLCLKRTKHFELGQKAAPTGHQF 103
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_002179101.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49799.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 162.9 bits (411), Expect = 5.300e-37 Identity = 82/101 (81.19%), Postives = 88/101 (87.13%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSG 102 MV +PKERKT+C G KCKKH HKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+KV LRLECK CKTKKQL IKRTKHFELGEK K SG Sbjct: 1 MVNVPKERKTYCAG-KCKKHAAHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKVVLRLECKKCKTKKQLCIKRTKHFELGEKAKQSG 100 The following BLAST results are available for this feature:
BLAST of NO10G02500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G02500 ID=NO10G02500|Name=NO10G02500|organism=Nannochloropsis oceanica|type=gene|length=869bpback to top protein sequence of NO10G02500.1 >NO10G02500.1-protein ID=NO10G02500.1-protein|Name=NO10G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bpback to top Synonyms
Publications
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