NO10G02460, NO10G02460 (gene) Nannochloropsis oceanica

Overview
NameNO10G02460
Unique NameNO10G02460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length702
Alignment locationchr10:666709..667410 +

Link to JBrowse

Properties
Property NameValue
DescriptionMyosin Va
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:666709..667410 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003774motor activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016459myosin complex
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001609Myosin_head_motor_dom
Homology
BLAST of NO10G02460 vs. NCBI_GenBank
Match: OEU09594.1 (myosin Va, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 197.6 bits (501), Expect = 4.300e-47
Identity = 103/228 (45.18%), Postives = 140/228 (61.40%), Query Frame = 0
Query:    4 NSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQECLDLIEKRGTVVWAVLDEQCVVRTKAPDTSFAHRLYEVSKNHPRFTATSRDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQSLSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQLALLLQRVYSTRPHYVRCLEPNDCNIPSAFD 232
            NS+EQLCIN  NE LQQQ N+FVF+LEQ EYE+E I W+F+ F DNQ+ LDLIE +   + ++LDE+C +     DT+F   +YE  K HPRF+AT     +  F + HYAG V YD+  FLEKNKD+L +E  +LL SS    +  L   +      T  ++    D   +S   +  +  S+++R TV SQF  QL  L  R+ ST PHYVRCL+PND  +P+ F+
Sbjct:  402 NSYEQLCINYCNEALQQQFNKFVFKLEQHEYEQEGIDWSFIEFPDNQDILDLIENKREGILSILDEKCRL-ASCTDTTFCRAIYEKCKKHPRFSATQSQIANFEFSIEHYAGTVTYDSANFLEKNKDELPKETTELLASSSVRFLAYLGETLNEEDEPTSASAKAFADRDGTSDTNNRKRNNSSILRTTVGSQFSRQLRELRDRIDSTSPHYVRCLKPNDDLVPNQFE 628          
BLAST of NO10G02460 vs. NCBI_GenBank
Match: GBG34344.1 (Myosin-6 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 197.6 bits (501), Expect = 4.300e-47
Identity = 109/220 (49.55%), Postives = 143/220 (65.00%), Query Frame = 0
Query:    4 NSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQECLDLIEKRGTVVWAVLDEQCVVRTKAPDTSFAHRLYEVSKNHPRFTATSRDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQSLSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQLALLLQRVYSTRPHYVRCLEPND 224
            NSFEQLCIN ANE LQQQ NQFVF+LEQ+EYE+E I W+F+ F DNQ+CLDLIE +   + ++LDEQC+   +  D S A R YE+  + PRF+  +RD V+ RF + HYAG+V YDT GF+ KNKDQLY E ++L++SS+   + +L    E+A                 S G      RS +   T+ SQFK QL+ LL+ + ST PHYVRCL+PND
Sbjct:  503 NSFEQLCINYANETLQQQFNQFVFKLEQKEYEKEKIKWSFIDFPDNQQCLDLIESKPIGIISLLDEQCLF-PRGNDRSLAGRFYELLSDVPRFSVANRDRVNYRFTIEHYAGDVTYDTAGFVAKNKDQLYPESLELMQSSQDPFL-ALLFPTEMA-----------------SAGAGRNNGRS-IQSKTLGSQFKDQLSDLLKTIRSTSPHYVRCLKPND 702          
BLAST of NO10G02460 vs. NCBI_GenBank
Match: ACS35545.1 (myosin I [Phaeodactylum tricornutum])

HSP 1 Score: 192.2 bits (487), Expect = 1.800e-45
Identity = 107/228 (46.93%), Postives = 143/228 (62.72%), Query Frame = 0
Query:    4 NSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQECLDLIEKRGTVVWAVLDEQCVVRTKAPDTSFAHRLYEVSKNHPRFTATSRDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQSLSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQLALLLQRVYSTRPHYVRCLEPNDCNIPSAFD 232
            NSFEQLCIN  NE LQQQ N+FVF+LEQ+EY +E I W+F++F DNQ+ LDLIEKR   + +VLDEQ  +  +  D SFA  +YE    HPRF ++        F ++HYAG V Y+T  FLEKN+D L +E  +LL SS    +  L   I   KS     SN+++   S        +  S+++R +V SQF  QL LL +R+ ST PHYVRCL+PND  +P++FD
Sbjct:  554 NSFEQLCINYCNEALQQQFNRFVFKLEQQEYHKEGIDWSFIAFPDNQDVLDLIEKRHDGILSVLDEQSRL-GRCTDKSFAQAIYEKCGAHPRFESSKSQQAILAFGIQHYAGSVEYNTANFLEKNRDDLPKETTELLMSSSNPFLVGLGK-ILCEKSVALNASNSAM---SRGNRKQLQRAASSILRDSVGSQFSSQLQLLRKRIESTAPHYVRCLKPNDDLVPNSFD 776          
BLAST of NO10G02460 vs. NCBI_GenBank
Match: GAX27212.1 (hypothetical protein FisN_13Lh232 [Fistulifera solaris])

HSP 1 Score: 192.2 bits (487), Expect = 1.800e-45
Identity = 109/231 (47.19%), Postives = 141/231 (61.04%), Query Frame = 0
Query:    2 QKNSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQECLDLIEKRGTVVWAVLDEQCVVRTKAP-DTSFAHRLYEVSKNHPRFTATSRDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQSLSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQLALLLQRVYSTRPHYVRCLEPNDCNIPSAFD 232
            Q NSFEQLCIN  NE LQQQ N FV + EQ  YE+E I W+F+ F +NQ+ LDLIEKRGT ++++LD+QC  R   P D +FA  LY   K  PRF+A+ +   + +F V HYAG V Y T GF+EKNKD L +EI++LL++S    VQ L+  +E    T R T  N   F          +  S V R TV  QF+ QL  L  ++  T PHY+RCL+PND  IP  +D
Sbjct:  638 QTNSFEQLCINFCNEALQQQFNAFVLKNEQAIYEKEGIEWSFIEFPENQDVLDLIEKRGTGIFSILDDQC--RAPGPSDKAFAINLYNQCKGLPRFSASRKQTANLQFAVSHYAGPVEYSTAGFVEKNKDDLPKEIIELLKTSSLPFVQDLAFIME-GDVTERSTDKNGAKF---------QRHGSFVGRATVGGQFRNQLRDLRDKIGLTNPHYIRCLKPNDQLIPDVYD 856          
BLAST of NO10G02460 vs. NCBI_GenBank
Match: GAX27673.1 (hypothetical protein FisN_13Hh232 [Fistulifera solaris])

HSP 1 Score: 190.7 bits (483), Expect = 5.300e-45
Identity = 108/231 (46.75%), Postives = 141/231 (61.04%), Query Frame = 0
Query:    2 QKNSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQECLDLIEKRGTVVWAVLDEQCVVRTKAP-DTSFAHRLYEVSKNHPRFTATSRDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQSLSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQLALLLQRVYSTRPHYVRCLEPNDCNIPSAFD 232
            Q NSFEQLCIN  NE LQQQ N FV + EQ  YE+E I W+F+ F +NQ+ LDLIEKRGT ++++LD+QC  R   P D +FA  LY   K  PRF+A+ +   + +F V HYAG V Y T GF+EKNKD L +EI++LL++S    VQ L+  +E    T + T  N   F          +  S V R TV  QF+ QL  L  ++  T PHY+RCL+PND  IP  +D
Sbjct:  639 QTNSFEQLCINFCNEALQQQFNAFVLKNEQAIYEKEGIEWSFIEFPENQDVLDLIEKRGTGIFSILDDQC--RAPGPSDKAFAINLYNQCKGLPRFSASRKQTANLQFAVSHYAGPVEYSTDGFVEKNKDDLPKEIIELLKTSSLPFVQDLAFIME-GDVTEKSTDKNGAKF---------QRHGSFVGRATVGGQFRNQLRDLRDKIGLTNPHYIRCLKPNDQLIPDVYD 857          
BLAST of NO10G02460 vs. NCBI_GenBank
Match: GAX15266.1 (hypothetical protein FisN_1Hh703 [Fistulifera solaris])

HSP 1 Score: 189.1 bits (479), Expect = 1.500e-44
Identity = 103/228 (45.18%), Postives = 142/228 (62.28%), Query Frame = 0
Query:    4 NSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQECLDLIEKRGTVVWAVLDEQCVVRTKAPDTSFAHRLYEVSKNHPRFTATSRDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQSLSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQLALLLQRVYSTRPHYVRCLEPNDCNIPSAFD 232
            NSFEQLCIN  NE LQQQ N+FVF+LEQ+EY++E I W+F+SF DNQ+ LDLIEK+   + ++LDEQ  +  +  D++FA  +YE    + RF AT      C F + HYAG V YDT  FLEKNKD+L +E  +LL +S   L+ +L  D+E        +  +S      S      +  S+++R +V +QF+ QL  L  R+ ST PHYVRCL+PND  +P  F+
Sbjct:  450 NSFEQLCINYCNEALQQQFNRFVFKLEQQEYQKEGIEWSFISFPDNQDILDLIEKKHGGILSILDEQSRL-PRCTDSTFAQAVYEKCDGNVRFEATKSQQAVCTFSIDHYAGLVEYDTMNFLEKNKDELPKETTELLCTSSHPLLATLGRDLE------SESDEHSSSSVPKSRSKVLQRSSSSILRESVGTQFRAQLLALRSRIESTNPHYVRCLKPNDDLVPQNFN 670          
BLAST of NO10G02460 vs. NCBI_GenBank
Match: ACS35544.1 (myosin H [Phaeodactylum tricornutum])

HSP 1 Score: 188.3 bits (477), Expect = 2.600e-44
Identity = 108/231 (46.75%), Postives = 135/231 (58.44%), Query Frame = 0
Query:    2 QKNSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQECLDLIEKRGTVVWAVLDEQCVVRTKAP-DTSFAHRLYEVSKNHPRFTATSRDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQSLSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQLALLLQRVYSTRPHYVRCLEPNDCNIPSAFD 232
            Q NSFEQLCIN  NE LQQQ N FV R EQ EYE+E I W F+ F +NQ+ LDLI+KRG  +  +LD+QC  R   P DTSF  ++Y++  N  RF+AT       +F V HYAG V Y   GF EKN+D+L      L  SS    VQ L+  +E A ++    S  S+  F  S         S V RPTVA QF+ QL  L  ++  T PHY+RCL+PNDC +P  FD
Sbjct:  653 QVNSFEQLCINYCNEALQQQFNAFVLRNEQAEYEKEGILWKFIEFPENQDVLDLIDKRGIGILHILDDQC--RAPGPSDTSFGLQVYQMCANSSRFSATRAQKAHLQFAVHHYAGPVTYTAKGFTEKNRDELPTSTRTLFLSSESTFVQQLAHILEWAPNSNASASAFSVRSFQRSD--------STVGRPTVAGQFQRQLKKLRSKIDQTSPHYIRCLKPNDCLLPDKFD 873          
BLAST of NO10G02460 vs. NCBI_GenBank
Match: XP_024397400.1 (myosin-1-like [Physcomitrella patens] >AEM05967.1 myosin VIII B [Physcomitrella patens] >PNR39427.1 hypothetical protein PHYPA_019705 [Physcomitrella patens])

HSP 1 Score: 188.3 bits (477), Expect = 2.600e-44
Identity = 102/231 (44.16%), Postives = 144/231 (62.34%), Query Frame = 0
Query:    2 QKNSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQECLDLIEKRGTVVWAVLDEQCVVRTKAPDTSFAHRLYEVSKNHPRFTATSRDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQSLSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQLALLLQRVYSTRPHYVRCLEPNDCNIPSAFDE 233
            ++NSFEQLCIN ANE LQQ  N+ +F+LEQEEY  EDI W  + F DNQ+CLDLIEKR   + ++LDE+C+   +A D + A++L    K+H +  A+ R   D +FRV HYAGEV+Y+  GFLEKN+D L+ ++V+LL S  CAL+                      DF +S+         S   + +VAS+FKGQL  LLQR+ +T PH++RC++PN   +P+  D+
Sbjct:  679 KRNSFEQLCINYANERLQQHFNRHLFKLEQEEYTSEDIDWTRIEFQDNQQCLDLIEKRPVGLISLLDEECMF-PRATDFTLANKL----KDHLKKNASFRGERDKKFRVYHYAGEVLYEADGFLEKNRDLLHADLVELLESCDCALI---------------------FDFLASAGQGSGKSNGSEYQKQSVASKFKGQLNKLLQRLEATEPHFIRCIKPNTQQLPNVIDQ 883          
BLAST of NO10G02460 vs. NCBI_GenBank
Match: EJK44080.1 (hypothetical protein THAOC_37413 [Thalassiosira oceanica])

HSP 1 Score: 188.3 bits (477), Expect = 2.600e-44
Identity = 102/230 (44.35%), Postives = 138/230 (60.00%), Query Frame = 0
Query:    2 QKNSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQECLDLIEKRGTVVWAVLDEQCVVRTKAPDTSFAHRLYEVSKNHPRFTATSRDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQSLSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQLALLLQRVYSTRPHYVRCLEPNDCNIPSAFD 232
            ++N+FEQLCIN  NE LQQQ N++VF+LEQ+EYERE I W F+SF DNQ+ LDLI+++ T + A+LDEQC+V  ++ D  F   LY    +HPRFTATS   VD +F V HYAG V Y T  +LEKNKDQL     +LL++S   L+  +   +                        +  + R +V   +V +QF  QL+ L  R+ +T PHY+RCL+PND   P  FD
Sbjct:  541 EQNNFEQLCINYTNEALQQQFNRYVFKLEQDEYEREGILWKFISFPDNQDVLDLIDRKHTGIIALLDEQCIV-PRSTDEKFTRYLYAKCDSHPRFTATSAQRVDYKFSVEHYAGPVEYGTESWLEKNKDQLPASSANLLKASEFKLLNDIQPFVR----------------------TEDREGRGSVATKSVGAQFSEQLSQLRSRIDATVPHYIRCLKPNDELKPDTFD 747          
BLAST of NO10G02460 vs. NCBI_GenBank
Match: XP_002184750.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC43809.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 188.3 bits (477), Expect = 2.600e-44
Identity = 108/231 (46.75%), Postives = 135/231 (58.44%), Query Frame = 0
Query:    2 QKNSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQECLDLIEKRGTVVWAVLDEQCVVRTKAP-DTSFAHRLYEVSKNHPRFTATSRDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQSLSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQLALLLQRVYSTRPHYVRCLEPNDCNIPSAFD 232
            Q NSFEQLCIN  NE LQQQ N FV R EQ EYE+E I W F+ F +NQ+ LDLI+KRG  +  +LD+QC  R   P DTSF  ++Y++  N  RF+AT       +F V HYAG V Y   GF EKN+D+L      L  SS    VQ L+  +E A ++    S  S+  F  S         S V RPTVA QF+ QL  L  ++  T PHY+RCL+PNDC +P  FD
Sbjct:  418 QVNSFEQLCINYCNEALQQQFNAFVLRNEQAEYEKEGILWKFIEFPENQDVLDLIDKRGIGILHILDDQC--RAPGPSDTSFGLQVYQMCANSSRFSATRAQKAHLQFAVHHYAGPVTYTAKGFTEKNRDELPTSTRTLFLSSESTFVQQLAHILEWAPNSNASASAFSVRSFQRSD--------STVGRPTVAGQFQRQLKKLRSKIDQTSPHYIRCLKPNDCLLPDKFD 638          
The following BLAST results are available for this feature:
BLAST of NO10G02460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OEU09594.14.300e-4745.18myosin Va, partial [Fragilariopsis cylindrus CCMP1... [more]
GBG34344.14.300e-4749.55Myosin-6 [Aurantiochytrium sp. FCC1311][more]
ACS35545.11.800e-4546.93myosin I [Phaeodactylum tricornutum][more]
GAX27212.11.800e-4547.19hypothetical protein FisN_13Lh232 [Fistulifera sol... [more]
GAX27673.15.300e-4546.75hypothetical protein FisN_13Hh232 [Fistulifera sol... [more]
GAX15266.11.500e-4445.18hypothetical protein FisN_1Hh703 [Fistulifera sola... [more]
ACS35544.12.600e-4446.75myosin H [Phaeodactylum tricornutum][more]
XP_024397400.12.600e-4444.16myosin-1-like [Physcomitrella patens] >AEM05967.1 ... [more]
EJK44080.12.600e-4444.35hypothetical protein THAOC_37413 [Thalassiosira oc... [more]
XP_002184750.12.600e-4446.75predicted protein, partial [Phaeodactylum tricornu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02460.1NO10G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665473gene_3967Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02460.1NO10G02460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02460 ID=NO10G02460|Name=NO10G02460|organism=Nannochloropsis oceanica|type=gene|length=702bp
ATGCAGAAAAACTCGTTCGAGCAACTTTGTATCAACGCTGCTAATGAAGA
GTTGCAGCAGCAGTCCAATCAGTTTGTCTTTCGGCTGGAGCAGGAGGAGT
ATGAGCGAGAGGATATCTCCTGGAACTTTGTATCTTTTTCTGATAACCAA
GAATGTCTGGATCTGATCGAGAAGAGGGGGACGGTGGTCTGGGCGGTATT
AGACGAGCAATGCGTCGTTCGTACCAAAGCCCCGGATACATCCTTTGCAC
ATCGGCTCTATGAGGTGAGTAAGAACCATCCACGCTTCACTGCCACTTCA
CGCGATCATGTGGACTGTCGCTTTCGGGTACGTCATTATGCAGGGGAGGT
GGTGTACGACACGGGTGGTTTCCTTGAGAAGAACAAGGACCAGCTGTATC
AAGAAATAGTAGATTTGCTGAGGTCATCTCGATGTGCATTGGTGCAGAGC
TTGTCTTCCGATATCGAGGTCGCCAAGTCCACTACTCGATATACCAGCAA
CAACAGTCTTGACTTCTTTTCCTCCTCCACTGGTGTTGATGCCACGAAGC
GTCGTAGCGCCGTTGTACGCCCGACTGTCGCCTCTCAATTCAAGGGGCAA
CTCGCCTTGTTGCTGCAGCGTGTTTACTCCACCCGCCCTCATTACGTCCG
TTGCCTTGAACCTAATGATTGTAATATTCCCTCTGCTTTCGATGAGCCAT
GA
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protein sequence of NO10G02460.1

>NO10G02460.1-protein ID=NO10G02460.1-protein|Name=NO10G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MQKNSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQ
ECLDLIEKRGTVVWAVLDEQCVVRTKAPDTSFAHRLYEVSKNHPRFTATS
RDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQS
LSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQ
LALLLQRVYSTRPHYVRCLEPNDCNIPSAFDEP*
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Synonyms
Publications