NO10G02350, NO10G02350 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G02350 vs. NCBI_GenBank
Match: EWM25417.1 (RNA binding protein [Nannochloropsis gaditana]) HSP 1 Score: 220.7 bits (561), Expect = 9.600e-54 Identity = 137/269 (50.93%), Postives = 153/269 (56.88%), Query Frame = 0 Query: 15 KELNAKERRLLRRAQERMAAESGPLAPPTXXXXXXXXXXXXXXXXXXXXXXTPSLIESVAKKVSSKDIMPFTMPPGGLESLNAKQRRLYKRAQGRAAQEAGPVATQINADTSTRVKRKRSV-----------ETPHIVFVGQLGFKTTAEALQEHLEKGGVAGIVHVRLLTEKGTGKSRGQAFVTLIDAENQYKCLSLHHTKLDGRVINVERSCGGKNVDKRKEKITALRGEQKVALRATCNRILKEKIEAGELKPGELDEQAVGLLTR 273 K +NAKERRLLRRAQER A SG + P P E +V D P PG SLNAKQR E PHIVFVGQL F T+A L+EHLE GGV G +HVRLLTEKG+ KSRGQAFVTLIDAENQYKCLSLHH+KL RVINVERSCGG+N+DKRK K+ ALR EQ+ A+ TC+RI+KEK EAG+L PGELDEQAV LLTR Sbjct: 7 KSMNAKERRLLRRAQERAKAASGASSIPA---TSNPPGVVLSKNGKKNVTRKPETSEEPNPQV---DTAPSAQDPG---SLNAKQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
BLAST of NO10G02350 vs. NCBI_GenBank
Match: CBN79101.2 (conserved unknown protein (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 149.1 bits (375), Expect = 3.500e-32 Identity = 82/167 (49.10%), Postives = 113/167 (67.66%), Query Frame = 0 Query: 138 PHIVFVGQLGFKTTAEALQEHLE-KGGVAGIVHVRLLTEKGTG--KSRGQAFVTLIDAENQYKCLSLHHTKLDGRVINVERSCGGKNVDKRKEKITALRGEQKVALRATCNRILKEKIEAGELKPGELDEQAVGLLTRYDGGMASAILEAYCAE-DRDRLRNRSAYF 301 P IVFVGQL F TTAE ++EH +GG+ G + VRLLT KGT KSRG AF+ + DAE+ Y+CLSLHH++LDGR++NVER+ GG +++ E+I RGEQK +++ R+L E I AG L ELDE A G+L + + + ++ YC + DR L+N SA+F Sbjct: 179 PFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPKSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGG-GKERKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWF 344
BLAST of NO10G02350 vs. NCBI_GenBank
Match: EJK75211.1 (hypothetical protein THAOC_03075 [Thalassiosira oceanica]) HSP 1 Score: 130.6 bits (327), Expect = 1.300e-26 Identity = 90/251 (35.86%), Postives = 132/251 (52.59%), Query Frame = 0 Query: 93 ESLNAKQRRLYKR-AQGRAAQEAGPVATQINAD-----------TSTRVKRKRSVETPHIVFVGQLGFKTTAEALQEHLEKGGVAGIV-----HVRLLTEKGTGKSRGQAFVTLIDAENQYKCLSLHHTKLDGRVINVERSCGGKNVDKRKEKITALRGEQKVALRATCNRILKEKIEAGELKPGELDEQAVGLLTRYDGGMASAILEAYCAEDRDR--------------LRNRSAYFMMLAKRVIDEGI 313 + LN+K+RR KR A+ A+++ P + + TST K S + + VF+GQL F TT E L H++ ++ +RLLT+ T +SRG AFVTL E +Y+CL LH T LDGR INVE S GG ++ RK KI+ R Q + AT +RI++ + GE++ ELDE +GL R+ + A L+ Y AE ++R LRN SA+ + R+ +EG+ Sbjct: 170 DKLNSKERRSAKRKAEAIASEQLQPDGGSSSTEELLAWYETVRPTST---EKESGKVSYNVFIGQLAFNTTKEGLFGHIQSTLGKDLITAESCQIRLLTDTKTKRSRGMAFVTLSSGELRYECLKLHLTYLDGRRINVELSPGG-GIEARKSKISTFRESQAKYISATVDRIIQSFVSQGEIEADELDEGVLGLCKRHSATVVEAALKEYVAEKKERKIKKETLGEKEEEELRNPSAFLSHMLGRIAEEGV 416
BLAST of NO10G02350 vs. NCBI_GenBank
Match: GAX23600.1 (nucleolar protein 6 [Fistulifera solaris]) HSP 1 Score: 130.6 bits (327), Expect = 1.300e-26 Identity = 87/249 (34.94%), Postives = 132/249 (53.01%), Query Frame = 0 Query: 93 ESLNAKQRRLYKR-AQGRAAQEAGPVATQINA-----------DTSTRVKRKRSVET-------PHIVFVGQLGFKTTAEALQEHLEKGGV---------AGIVHVRLLTEKGTGKSRGQAFVTLIDAENQYKCLSLHHTKLDGRVINVERSC-GGKNVDKRKEKITALRGEQKVALRATCNRILKEKIEAGELKPGELDEQAVGLLTRYDGGMASAILEAYCAEDRDRLRNRSAYFMMLAKRVIDEGI 313 ES+ AK RR KR A+ A +++G A ++ A +T+ K+K++ T P+I+F+GQL + TT E+L +H + +RLLT+ T KSRG AFV L E + CL LH T L+GR INVE+S GGK+ ++RKEK+ R +Q+ + + +++ E + GE++ GELDE + L R+ G + A LE Y + + N SAY L ++ EGI Sbjct: 63 ESMKAKDRRSAKRKAEAIALEKSGCSADELLAWYKEQKDDDRPETNNSRKQKKADATQTDKRKIPYILFIGQLSYDTTKESLLQHFQSELADDDDGFDINEQTCQIRLLTDAKTKKSRGMAFVELSTPELMHACLKLHKTMLEGRRINVEKSAGGGKHSEQRKEKLKTFRTQQEEYIESMVTKMIDEYKQKGEIQDGELDEGVIALCQRHSGAVVQAALERYVDSNGREMDNPSAYLSFLLGKLAQEGI 311
BLAST of NO10G02350 vs. NCBI_GenBank
Match: XP_002290662.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92414.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 129.0 bits (323), Expect = 3.800e-26 Identity = 84/245 (34.29%), Postives = 128/245 (52.24%), Query Frame = 0 Query: 93 ESLNAKQRRLYKR-AQGRAAQEAGPVATQI----NADTSTRVKRKRSVETPHIVFVGQLGFKTTAEALQEHLEKGGVAGI-----VHVRLLTEKGTGKSRGQAFVTLIDAENQYKCLSLHHTKLDGRVINVERSCGGKNVDKRKEKITALRGEQKVALRATCNRILKEKIEAGELKPGELDEQAVGLLTRYDGGMASAILEAYCAE--------------DRDRLRNRSAYFMMLAKRVIDEGIE 314 E++NAK+RR KR A+ A +E+G A ++ + + + K + + P+IVF+GQL + TT + + +H + V +RLLT+ T KSRG AFV L E Y+CL +H T LDGR INVER+ GG +K KIT+ R EQ + T + IL E ++ G++ ELDE + L R+ + L Y E + + LRN SA+ + R+ +EG++ Sbjct: 143 EAMNAKERRSAKRKAEAIATEESGCPANELLEWYDTISPPNKEDKDAKKIPYIVFIGQLSYSTTTDMIYDHFHNTLGPDVITKESVKIRLLTDSKTKKSRGMAFVELDSPEAMYECLRMHLTHLDGRRINVERTAGG-GAALKKSKITSYREEQTTYISQTMDHILSEYMKKGDIDEDELDEGVIALCKRHSATVVERALNEYVDEKKVRKERKETLGEKEEEELRNPSAFLTHMIGRIAEEGLD 386
BLAST of NO10G02350 vs. NCBI_GenBank
Match: GAX15132.1 (nucleolar protein 6 [Fistulifera solaris]) HSP 1 Score: 125.6 bits (314), Expect = 4.200e-25 Identity = 86/246 (34.96%), Postives = 131/246 (53.25%), Query Frame = 0 Query: 93 ESLNAKQRRLYKR-AQGRAAQEAGPVATQINA-----------DTSTRVKRKR------SVETPHIVFVGQLGFKTTAEALQEH----LEKGGV---AGIVHVRLLTEKGTGKSRGQAFVTLIDAENQYKCLSLHHTKLDGRVINVERSC-GGKNVDKRKEKITALRGEQKVALRATCNRILKEKIEAGELKPGELDEQAVGLLTRYDGGMASAILEAYCAEDRDRLRNRSAYFMMLAKRVIDEGI 313 +++ AK RR KR A+ A ++ G A ++ A +T++ K+K + P+I+F+GQL + TT E+L +H L G +RLLT+ T KSRG AFV L E + CL LH T L+GR INVE+S GGK+ ++RKEK+ R +Q+ + + +++ E + GE++ GELDE + L R+ G + A LE Y + + N SAY L ++ EGI Sbjct: 53 DTMKAKDRRSAKRKAEAIALEKTGCSADELLAWYKEQKEEDRPETNSNNKKKTEDTQHDKRKIPYILFIGQLSYDTTKESLLQHFQTELADDGFDVNEQTCQIRLLTDPKTKKSRGMAFVELSTPELMHACLKLHKTMLEGRRINVEKSAGGGKHSEQRKEKLKTFRTQQEEYIESMVAKMIDEYKQKGEIQDGELDEGVIALCQRHSGAVVQAALERYVDSNGREMDNPSAYLSFLLGKLAHEGI 298
BLAST of NO10G02350 vs. NCBI_GenBank
Match: XP_002177715.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50529.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 122.1 bits (305), Expect = 4.600e-24 Identity = 80/188 (42.55%), Postives = 110/188 (58.51%), Query Frame = 0 Query: 97 AKQRRLYKR-AQGRAAQEAGPVATQINA---DTSTRVKRKRSVETPHIVFVGQLGFKTTAEALQEHLEKG-GV-----AGIVHVRLLTEKGTGKSRGQAFVTLIDAENQYKCLSLHHTKLDGRVINVERSCGG-KNVDKRKEKITALRGEQKVALRATCNRILKEKIEAGELKPGELDEQAVGLLTRY 274 AK RR KR A+ AA+ AG AT++ A + + P+IVFVGQL + TT ++L +H+ K G V +RLLT+ T KSRG AFV + D E Y CL LHHT L+GR +NVER+ GG K+ D+RK KI R EQ+ + +L+E ++GE+KP E+D+ VGL R+ Sbjct: 97 AKDRRSAKRKAEAIAAEAAGCTATELLAWYEQHGANDPDAAASKIPYIVFVGQLSYDTTKDSLFQHIRKEIGTEHKVNPSTVKIRLLTDAKTKKSRGMAFVEVPDPEMLYACLKLHHTFLEGRRLNVERTAGGRKSSDQRKTKIQQRRQEQEQYFGTVVDNMLQEHYKSGEIKPHEIDDGVVGLCKRH 284
BLAST of NO10G02350 vs. NCBI_GenBank
Match: XP_009039090.1 (hypothetical protein AURANDRAFT_65840 [Aureococcus anophagefferens] >EGB06134.1 hypothetical protein AURANDRAFT_65840 [Aureococcus anophagefferens]) HSP 1 Score: 119.8 bits (299), Expect = 2.300e-23 Identity = 66/150 (44.00%), Postives = 89/150 (59.33%), Query Frame = 0 Query: 138 PHIVFVGQLGFKTTAEALQEHLEKGGVAGIVHVRLLTEKGTGKSRGQAFVTLIDAENQYKCLSLHHTKLDGRVINVERSCGGKNVDKRKEKITALRGEQKVALRATCNRILKEKIEAGELKPGELDEQAVGLLTRYDGGMASAILEAYCA 288 P + FVGQLGF TAE L+ V G + VRLLT+ TGKSRG AFV AE Y C++LHH ++DGR INVERS GG + +K K+ R Q + T +R+L+E + +G+L+ E+D+ LL R G +A A L Y + Sbjct: 712 PLVAFVGQLGFSVTAERLKAFFTSQDVPGTLKVRLLTDAKTGKSRGMAFVQCETAEALYACVALHHAQIDGRRINVERSAGGGR-EAKKGKLAEHRAHQSKKVEETVDRVLEEFVASGQLRRDEVDDGVRRLLQRRSGRVAHAALTEYAS 860
BLAST of NO10G02350 vs. NCBI_GenBank
Match: GAX99952.1 (Hypothetical protein PINS_007769 [Pythium insidiosum]) HSP 1 Score: 106.3 bits (264), Expect = 2.600e-19 Identity = 80/243 (32.92%), Postives = 122/243 (50.21%), Query Frame = 0 Query: 89 PGGLESLNAKQRRLYKRAQGRAAQEAGPVAT--------------------QINADTSTRVKRKRSVETPHI-VFVGQLGFKTTAEALQEHLEKGGVAGIVHVRLLTEKGTGKSRGQAFVTLIDAENQYKCLSLHHTKLDGRVINVE--RSCGGKNVDKRKEKITALRGEQKVALRATCNRILKEKIE--AGELKPGELDEQAVGLLTRYDGGMASAILEAYCAEDRDRLRNRSAYFMMLAKR 307 P G E LNAKQRRL KR R +E G AT ++ D + ++ H+ +FVGQL F T +++H + AG + +R+LT+K T K +G AF+ + D++ LS HHT L GR INVE S GG +R+EKI LR +Q ++++ I+ +L ++DE+ + L+ +D G A L+ + DR++NR A+FM + KR Sbjct: 115 PAG-ERLNAKQRRLLKREATR--REGGDDATPAPSXXXXXXXXXXXXXKRKRVADDADASAESDAKKKSIHLTLFVGQLPFNATEADIRKHFSE---AGEIQLRMLTDKKTRKFKGMAFIEVKDSKALGAALSRHHTLLKGRRINVELTASGGGNKSQQRREKIDTLRKKQSEKQLEKTRALVQKHIDTPGSKLTADDVDERMIDFLSWFDYGTAKTALDEFTKCSLDRVKNRKAFFMGILKR 351
BLAST of NO10G02350 vs. NCBI_GenBank
Match: POM59375.1 (RNA binding protein [Phytophthora palmivora var. palmivora]) HSP 1 Score: 105.9 bits (263), Expect = 3.400e-19 Identity = 77/222 (34.68%), Postives = 121/222 (54.50%), Query Frame = 0 Query: 94 SLNAKQRRLYKRAQGRAA---QEAGPVATQINADTSTRVKRK-RSVETPHI-VFVGQLGFKTTAEALQEHLEKGGVAGIVHVRLLTEKGTGKSRGQAFVTLIDAENQYKCLSLHHTKLDGRVINVE--RSCGGKNVDKRKEKITALRGEQKVALRATCNRILKEKIEAGE--LKPGELDEQAVGLLTRYDGGMASAILEAYCAEDRDRLRNRSAYFMMLAKR 307 +LNA+QRRL KR R A E P+A + +T + K S ++ H+ +FVGQL ++ T + + +H + AG + +R+LT+K T K +G AF+ + D++ LS HHT L GR INVE S GG + R+ KI LR +Q ++++ I+ E LK ++D++ + L+ +D A LE Y D++ NR A+FM + KR Sbjct: 93 NLNAQQRRLLKRQAKRQADGVDEKKPLAKKHKKKEATDEQGKPNSHKSIHLTLFVGQLPYRATEDMILKHFAE---AGDIKLRMLTDKKTNKFKGTAFIEVKDSKALGAALSRHHTLLQGRRINVELTASGGGNKSENRRNKIDLLRKKQSNVQVEKTKALIQKHIDGPEYKLKQEDVDDRMIDFLSWFDYETAKKALEEYNRCVNDKVNNRKAFFMGILKR 311 The following BLAST results are available for this feature:
BLAST of NO10G02350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G02350 ID=NO10G02350|Name=NO10G02350|organism=Nannochloropsis oceanica|type=gene|length=2393bpback to top protein sequence of NO10G02350.1 >NO10G02350.1-protein ID=NO10G02350.1-protein|Name=NO10G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bpback to top Synonyms
Publications
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