NO10G02340, NO10G02340 (gene) Nannochloropsis oceanica

Overview
NameNO10G02340
Unique NameNO10G02340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length957
Alignment locationchr10:641438..642394 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranslation initiation factor if-1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:641438..642394 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR004368TIF_IF1
IPR006196RNA-binding_domain_S1_IF1
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO10G02340 vs. NCBI_GenBank
Match: EWM25462.1 (translation initiation factor if-1 [Nannochloropsis gaditana])

HSP 1 Score: 177.2 bits (448), Expect = 4.300e-41
Identity = 109/155 (70.32%), Postives = 114/155 (73.55%), Query Frame = 0
Query:    1 MLGRASILVAAVAVILMLVEQATAFMGPLPRAGKGIVGDSSANSQRQHMDRRVGEQLHFQS------SSTALWAKKNKESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDR 150
            MLGR S L A  + ILML  Q T F+G LP A K        NS  Q    R G +   +       SS AL AKKNKESDVIEVDGIVKESLPNAKFRVEL+ATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDR
Sbjct:    1 MLGRLSFL-AIASTILMLAVQITGFVGLLPGACKRAA--DIQNSMYQWPFVRTGTEGPTRREDRTFWSSLALCAKKNKESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDR 152          
BLAST of NO10G02340 vs. NCBI_GenBank
Match: CBJ28177.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.8 bits (247), Expect = 8.800e-18
Identity = 45/64 (70.31%), Postives = 58/64 (90.62%), Query Frame = 0
Query:   78 EVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 142
            +V+G+VKE LP+A FRVE+ AT  V++C+ SG++RKNFVR+LVGDPV+VELSPYDLTRGRIT+R
Sbjct:   65 KVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 128          
BLAST of NO10G02340 vs. NCBI_GenBank
Match: OGX10186.1 (translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium GWA2_37_7] >OGX25221.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium GWF2_38_59] >OGX47893.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYA2_FULL_38_17] >OGX54147.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYA12_FULL_38_10] >OGX56230.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYC2_FULL_38_12] >OGX60265.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYB2_FULL_38_16])

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16
Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = 0
Query:   73 ESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144
            + D+IEV+GIVKE+LPNAKFRVE L    ++    SGK+RK+F+R+L GD VKVELSPYDLTRGRITYR++
Sbjct:    3 KEDLIEVEGIVKEALPNAKFRVE-LENGHIVQAHISGKIRKHFIRILPGDKVKVELSPYDLTRGRITYRNK 72          
BLAST of NO10G02340 vs. NCBI_GenBank
Match: OGX36932.1 (translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_50_17] >OGX42306.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_50_9])

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 0
Query:   73 ESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 142
            + ++IEV+GIVKE+LPNA FRVE L  K +++   SGK+RKNF+R+L GD VKVELSPYDLTRGRITYR
Sbjct:    3 KEELIEVEGIVKEALPNAMFRVE-LENKHMVLAHISGKIRKNFIRILPGDSVKVELSPYDLTRGRITYR 70          
BLAST of NO10G02340 vs. NCBI_GenBank
Match: EJF06393.1 (translation initiation factor IF-1 [Thiovulum sp. ES])

HSP 1 Score: 95.5 bits (236), Expect = 1.700e-16
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 0
Query:   73 ESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 142
            +SDVIEVDG V E+LPNA FRVEL   K VI+C  +GKMR N++R+L GD VKVEL+PY L +GRITYR
Sbjct:    3 KSDVIEVDGTVVEALPNATFRVELNKNKHVILCHIAGKMRMNYIRILPGDTVKVELTPYSLDKGRITYR 71          
BLAST of NO10G02340 vs. NCBI_GenBank
Match: WP_013451604.1 (translation initiation factor IF-1 [Calditerrivibrio nitroreducens] >ADR19393.1 bacterial translation initiation factor 1 (bIF-1) [Calditerrivibrio nitroreducens DSM 19672] >PMP72593.1 translation initiation factor IF-1 [Calditerrivibrio nitroreducens])

HSP 1 Score: 94.7 bits (234), Expect = 2.800e-16
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 0
Query:   72 KESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144
            K+ DVIE +G+V E+LPNA F+VE L  K VI+C  SGKMR NF+R+L GD V VE+SPYDLT+GRITYR +
Sbjct:    3 KKDDVIEFEGVVLEALPNAMFKVE-LENKHVILCHLSGKMRMNFIRILPGDKVTVEMSPYDLTKGRITYRHK 73          
BLAST of NO10G02340 vs. NCBI_GenBank
Match: XP_009038038.1 (hypothetical protein AURANDRAFT_28065, partial [Aureococcus anophagefferens] >EGB07421.1 hypothetical protein AURANDRAFT_28065, partial [Aureococcus anophagefferens])

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-15
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 0
Query:   81 GIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144
            G+VKE+LPNA FRVE+     V++C+ SGK+RKNFV++LVGD VKVELSPYDLTRGRIT+R R
Sbjct:    1 GVVKEALPNAMFRVEI----GVLLCTISGKIRKNFVKILVGDSVKVELSPYDLTRGRITFRER 59          
BLAST of NO10G02340 vs. NCBI_GenBank
Match: WP_015523207.1 (translation initiation factor IF-1 [Ruminococcus bromii] >CCX83352.1 translation initiation factor IF-1 [Ruminococcus sp. CAG:108] >SCJ09404.1 Translation initiation factor IF-1 [uncultured Ruminococcus sp.] >OLA50751.1 translation initiation factor IF-1 [Ruminococcus sp. CAG:108-related_41_35] >PKD29193.1 Translation initiation factor IF-1 [Ruminococcus bromii] >PKD29738.1 Translation initiation factor IF-1 [Ruminococcus bromii] >PKD32777.1 Translation initiation factor IF-1 [Ruminococcus bromii] >SPE91518.1 Translation initiation factor IF-1,translation in itiation factor IF-1,translation initiation factor IF-1,Tra nslation initiation factor 1A / IF-1 [Ruminococcus bromii L2-63])

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-15
Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = 0
Query:   73 ESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144
            + DVIE++GIVKE+LPNA+F+VE L    VI+   SGK+R NF+R+L GD VKVE+SPYDLTRGRIT+R++
Sbjct:    3 KQDVIEIEGIVKEALPNAQFKVE-LPNGHVILAVISGKLRMNFIRILPGDKVKVEMSPYDLTRGRITWRTK 72          
BLAST of NO10G02340 vs. NCBI_GenBank
Match: OAI43363.1 (translation initiation factor IF-1 [Rhizomicrobium sp. SCGC AG-212-E05])

HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15
Identity = 41/71 (57.75%), Postives = 58/71 (81.69%), Query Frame = 0
Query:   73 ESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144
            + +++E +GIV+E LPNA FRV+L+A + +I+  T+GKMRKN +RVL GD V +E++PYDLT+GRITYR R
Sbjct:    3 KEELLEFEGIVEELLPNATFRVKLIANEHIIIAHTAGKMRKNRIRVLTGDKVMIEMTPYDLTKGRITYRFR 73          
BLAST of NO10G02340 vs. NCBI_GenBank
Match: WP_002816015.1 (MULTISPECIES: translation initiation factor IF-1 [Leuconostoc] >Q03ZM4.1 RecName: Full=Translation initiation factor IF-1 >ABJ61348.1 bacterial translation initiation factor 1 (bIF-1) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] >ACA83397.1 Translation initiation factor IF-1 [Leuconostoc citreum KM20] >EEJ43086.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] >ADG40863.1 translational initiation [Leuconostoc kimchii IMSNU 11154] >CBL92357.1 Translation initiation factor IF-1 [Leuconostoc gelidum subsp. gasicomitatum LMG 18811] >AEJ31161.1 translation initiation factor IF-1 [Leuconostoc sp. C2] >AET29634.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. mesenteroides J18] >CCF23804.1 Translation initiation factor IF-1 [Leuconostoc citreum LBAE C10] >CCF26103.1 Translation initiation factor IF-1 [Leuconostoc citreum LBAE C11] >CCF29280.1 Translation initiation factor IF-1 [Leuconostoc citreum LBAE E16] >CCJ65984.1 Translation initiation factor 1 [Leuconostoc pseudomesenteroides 4882] >AFS41071.1 translation initiation factor IF-1 [Leuconostoc gelidum JB7] >AFT81093.1 translation initiation factor IF-1 [Leuconostoc carnosum JB16] >EQC83164.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. cremoris TIFN8] >AHF18384.1 Translation initiation factor 1 [Leuconostoc mesenteroides KFRI-MG] >KDA47807.1 Translation initiation factor 1 [Leuconostoc pseudomesenteroides 1159] >KDA50401.1 Translation initiation factor 1 [Leuconostoc pseudomesenteroides PS12] >KDA52634.1 Translation initiation factor 1 [Leuconostoc mesenteroides subsp. cremoris T26] >KGB50091.1 translation initiation factor IF-1 [Leuconostoc mesenteroides P45] >CDX65429.1 Translation initiation factor IF-1 [Leuconostoc citreum] >CDX67199.1 Translation initiation factor IF-1 [Leuconostoc citreum] >AKP36243.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. dextranicum] >KMY77487.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. mesenteroides] >KMY79837.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. cremoris] >KMY82503.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. dextranicum] >KQB82840.1 translation initiation factor IF-1 [Leuconostoc lactis] >CUR64352.1 Translation initiation factor 1 InfA [Leuconostoc gelidum subsp. gasicomitatum KG16-1] >CUW19107.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >CUW15017.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >CUW17237.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >CUW14047.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >CUW03925.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >CUW03798.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >ANY11739.1 translation initiation factor IF-1 [Leuconostoc lactis] >AQN79457.1 translation initiation factor IF-1 [Leuconostoc garlicum] >ORI55381.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. cremoris] >ORI84141.1 translation initiation factor IF-1 [Leuconostoc lactis] >ORI86333.1 translation initiation factor IF-1 [Leuconostoc lactis] >OSP81526.1 translation initiation factor IF-1 [Leuconostoc citreum] >ARR88899.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. mesenteroides] >BAX69855.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. suionicum] >BAX71850.1 translation initiation factor IF-1 [Leuconostoc mesenteroides] >ASR68731.1 translation initiation factor IF-1 [Leuconostoc mesenteroides] >PAK81880.1 translation initiation factor IF-1 [Leuconostoc mesenteroides] >PAV33164.1 translation initiation factor IF-1 [Leuconostoc lactis] >SOC28360.1 initiation factor IF-I [Leuconostoc gelidum subsp. gasicomitatum] >PND42071.1 translation initiation factor IF-1 [Leuconostoc mesenteroides] >SPE65310.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides] >SPE09648.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. suionicum] >SPD94705.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. suionicum] >SPE12723.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides] >SPH05214.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. suionicum] >SPI58611.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides])

HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 0
Query:   74 SDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144
            +DVIE++G VKE+LPNA F+VE L   AVI+   SGK+RKNF+R+L GD V VE+SPYDLT+GRITYR R
Sbjct:    3 NDVIEIEGKVKETLPNAMFQVE-LENGAVILAHVSGKIRKNFIRILPGDRVTVEMSPYDLTKGRITYRFR 71          
The following BLAST results are available for this feature:
BLAST of NO10G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25462.14.300e-4170.32translation initiation factor if-1 [Nannochloropsi... [more]
CBJ28177.18.800e-1870.31conserved unknown protein [Ectocarpus siliculosus][more]
OGX10186.11.300e-1666.20translation initiation factor IF-1 [Omnitrophica W... [more]
OGX36932.11.300e-1668.12translation initiation factor IF-1 [Omnitrophica W... [more]
EJF06393.11.700e-1666.67translation initiation factor IF-1 [Thiovulum sp. ... [more]
WP_013451604.12.800e-1663.89translation initiation factor IF-1 [Calditerrivibr... [more]
XP_009038038.11.100e-1569.84hypothetical protein AURANDRAFT_28065, partial [Au... [more]
WP_015523207.11.100e-1563.38translation initiation factor IF-1 [Ruminococcus b... [more]
OAI43363.11.400e-1557.75translation initiation factor IF-1 [Rhizomicrobium... [more]
WP_002816015.11.400e-1565.71MULTISPECIES: translation initiation factor IF-1 [... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001102NSK001102Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02340.1NO10G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586018gene_3980Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g19gene5052Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02340.1NO10G02340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02340 ID=NO10G02340|Name=NO10G02340|organism=Nannochloropsis oceanica|type=gene|length=957bp
GCATACGCAGCAGAGACCATTAAGGTGAGTTTCAGGAGGGTTGGCTTGCA
TGGCATGGTTTTTGGCCTTGGAGGGAGAGCATGACTGTGCGTAGGCTTAG
CGAGTGCGTGCGTGCCGGGGTATGTCGCTTGGCGCCGCACTCCCCGCCAC
ATCAAAACAGCACCGGCGCTCCCAAATTTCGGTAGGATTATTCATTTCCC
CTCCTTGCAATCGATCCTTCCATAAAAGTGTCAATTATGTTAGGCCGGGC
TTCGATCCTTGTTGCGGCGGTAGCAGTCATATTGATGCTTGTAGAGCAAG
CGACGGCGTTTATGGGACCGCTACCACGAGCAGGAAAGGGGATTGTTGGA
GATAGCAGCGCCAACAGTCAAAGACAGCACATGGACAGACGGGTTGGCGA
GCAGCTCCATTTCCAGgtgggaacgtggtggaaacagggacgcacgaaat
cattttgttaaattgtctacgcacccgcgctcacacctcgtcatttcttt
cgttctccatccctaccatacacatcaatggcttcaacaacagTCGTCTT
CAACGGCATTGTGGGCCAAGAAGAACAAGGAGTCGGACGTGATTGAGgta
cgttccatgaatgaccagccggcgacacatgtccaattctcctctcctgg
atttctcacactcttcccttcattctccccatcaaagGTGGACGGAATCG
TCAAGGAATCTCTCCCCAATGCCAAGTTTCGAGTTGAGCTCCTGGCTACC
AAGGCCGTCATTGTCTGCTCCACATCTGGGAAAATGCGCAAAAACTTTGT
GCGTGTCCTTGTCGGCGACCCCGTCAAGGTCGAGCTCTCTCCCTATGATT
TAACACGTGGCCGCATCACCTACCGCTCGCGAGGCCCTGGAAAGGATCGC
CCTGGGTCTCCGCAATTCCCTACGCCTGATGCCCCCCCTCCTCCTCCTTC
CTCCTAA
back to top

protein sequence of NO10G02340.1

>NO10G02340.1-protein ID=NO10G02340.1-protein|Name=NO10G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MLGRASILVAAVAVILMLVEQATAFMGPLPRAGKGIVGDSSANSQRQHMD
RRVGEQLHFQSSSTALWAKKNKESDVIEVDGIVKESLPNAKFRVELLATK
AVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRP
GSPQFPTPDAPPPPPSS*
back to top
Synonyms
Publications