NO10G02340, NO10G02340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G02340 vs. NCBI_GenBank
Match: EWM25462.1 (translation initiation factor if-1 [Nannochloropsis gaditana]) HSP 1 Score: 177.2 bits (448), Expect = 4.300e-41 Identity = 109/155 (70.32%), Postives = 114/155 (73.55%), Query Frame = 0 Query: 1 MLGRASILVAAVAVILMLVEQATAFMGPLPRAGKGIVGDSSANSQRQHMDRRVGEQLHFQS------SSTALWAKKNKESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDR 150 MLGR S L A + ILML Q T F+G LP A K NS Q R G + + SS AL AKKNKESDVIEVDGIVKESLPNAKFRVEL+ATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDR Sbjct: 1 MLGRLSFL-AIASTILMLAVQITGFVGLLPGACKRAA--DIQNSMYQWPFVRTGTEGPTRREDRTFWSSLALCAKKNKESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDR 152
BLAST of NO10G02340 vs. NCBI_GenBank
Match: CBJ28177.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 99.8 bits (247), Expect = 8.800e-18 Identity = 45/64 (70.31%), Postives = 58/64 (90.62%), Query Frame = 0 Query: 78 EVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 142 +V+G+VKE LP+A FRVE+ AT V++C+ SG++RKNFVR+LVGDPV+VELSPYDLTRGRIT+R Sbjct: 65 KVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 128
BLAST of NO10G02340 vs. NCBI_GenBank
Match: OGX10186.1 (translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium GWA2_37_7] >OGX25221.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium GWF2_38_59] >OGX47893.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYA2_FULL_38_17] >OGX54147.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYA12_FULL_38_10] >OGX56230.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYC2_FULL_38_12] >OGX60265.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFOXYB2_FULL_38_16]) HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16 Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = 0 Query: 73 ESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144 + D+IEV+GIVKE+LPNAKFRVE L ++ SGK+RK+F+R+L GD VKVELSPYDLTRGRITYR++ Sbjct: 3 KEDLIEVEGIVKEALPNAKFRVE-LENGHIVQAHISGKIRKHFIRILPGDKVKVELSPYDLTRGRITYRNK 72
BLAST of NO10G02340 vs. NCBI_GenBank
Match: OGX36932.1 (translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_50_17] >OGX42306.1 translation initiation factor IF-1 [Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_50_9]) HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16 Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 0 Query: 73 ESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 142 + ++IEV+GIVKE+LPNA FRVE L K +++ SGK+RKNF+R+L GD VKVELSPYDLTRGRITYR Sbjct: 3 KEELIEVEGIVKEALPNAMFRVE-LENKHMVLAHISGKIRKNFIRILPGDSVKVELSPYDLTRGRITYR 70
BLAST of NO10G02340 vs. NCBI_GenBank
Match: EJF06393.1 (translation initiation factor IF-1 [Thiovulum sp. ES]) HSP 1 Score: 95.5 bits (236), Expect = 1.700e-16 Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 0 Query: 73 ESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYR 142 +SDVIEVDG V E+LPNA FRVEL K VI+C +GKMR N++R+L GD VKVEL+PY L +GRITYR Sbjct: 3 KSDVIEVDGTVVEALPNATFRVELNKNKHVILCHIAGKMRMNYIRILPGDTVKVELTPYSLDKGRITYR 71
BLAST of NO10G02340 vs. NCBI_GenBank
Match: WP_013451604.1 (translation initiation factor IF-1 [Calditerrivibrio nitroreducens] >ADR19393.1 bacterial translation initiation factor 1 (bIF-1) [Calditerrivibrio nitroreducens DSM 19672] >PMP72593.1 translation initiation factor IF-1 [Calditerrivibrio nitroreducens]) HSP 1 Score: 94.7 bits (234), Expect = 2.800e-16 Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 0 Query: 72 KESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144 K+ DVIE +G+V E+LPNA F+VE L K VI+C SGKMR NF+R+L GD V VE+SPYDLT+GRITYR + Sbjct: 3 KKDDVIEFEGVVLEALPNAMFKVE-LENKHVILCHLSGKMRMNFIRILPGDKVTVEMSPYDLTKGRITYRHK 73
BLAST of NO10G02340 vs. NCBI_GenBank
Match: XP_009038038.1 (hypothetical protein AURANDRAFT_28065, partial [Aureococcus anophagefferens] >EGB07421.1 hypothetical protein AURANDRAFT_28065, partial [Aureococcus anophagefferens]) HSP 1 Score: 92.8 bits (229), Expect = 1.100e-15 Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 0 Query: 81 GIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144 G+VKE+LPNA FRVE+ V++C+ SGK+RKNFV++LVGD VKVELSPYDLTRGRIT+R R Sbjct: 1 GVVKEALPNAMFRVEI----GVLLCTISGKIRKNFVKILVGDSVKVELSPYDLTRGRITFRER 59
BLAST of NO10G02340 vs. NCBI_GenBank
Match: WP_015523207.1 (translation initiation factor IF-1 [Ruminococcus bromii] >CCX83352.1 translation initiation factor IF-1 [Ruminococcus sp. CAG:108] >SCJ09404.1 Translation initiation factor IF-1 [uncultured Ruminococcus sp.] >OLA50751.1 translation initiation factor IF-1 [Ruminococcus sp. CAG:108-related_41_35] >PKD29193.1 Translation initiation factor IF-1 [Ruminococcus bromii] >PKD29738.1 Translation initiation factor IF-1 [Ruminococcus bromii] >PKD32777.1 Translation initiation factor IF-1 [Ruminococcus bromii] >SPE91518.1 Translation initiation factor IF-1,translation in itiation factor IF-1,translation initiation factor IF-1,Tra nslation initiation factor 1A / IF-1 [Ruminococcus bromii L2-63]) HSP 1 Score: 92.8 bits (229), Expect = 1.100e-15 Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = 0 Query: 73 ESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144 + DVIE++GIVKE+LPNA+F+VE L VI+ SGK+R NF+R+L GD VKVE+SPYDLTRGRIT+R++ Sbjct: 3 KQDVIEIEGIVKEALPNAQFKVE-LPNGHVILAVISGKLRMNFIRILPGDKVKVEMSPYDLTRGRITWRTK 72
BLAST of NO10G02340 vs. NCBI_GenBank
Match: OAI43363.1 (translation initiation factor IF-1 [Rhizomicrobium sp. SCGC AG-212-E05]) HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15 Identity = 41/71 (57.75%), Postives = 58/71 (81.69%), Query Frame = 0 Query: 73 ESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144 + +++E +GIV+E LPNA FRV+L+A + +I+ T+GKMRKN +RVL GD V +E++PYDLT+GRITYR R Sbjct: 3 KEELLEFEGIVEELLPNATFRVKLIANEHIIIAHTAGKMRKNRIRVLTGDKVMIEMTPYDLTKGRITYRFR 73
BLAST of NO10G02340 vs. NCBI_GenBank
Match: WP_002816015.1 (MULTISPECIES: translation initiation factor IF-1 [Leuconostoc] >Q03ZM4.1 RecName: Full=Translation initiation factor IF-1 >ABJ61348.1 bacterial translation initiation factor 1 (bIF-1) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] >ACA83397.1 Translation initiation factor IF-1 [Leuconostoc citreum KM20] >EEJ43086.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] >ADG40863.1 translational initiation [Leuconostoc kimchii IMSNU 11154] >CBL92357.1 Translation initiation factor IF-1 [Leuconostoc gelidum subsp. gasicomitatum LMG 18811] >AEJ31161.1 translation initiation factor IF-1 [Leuconostoc sp. C2] >AET29634.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. mesenteroides J18] >CCF23804.1 Translation initiation factor IF-1 [Leuconostoc citreum LBAE C10] >CCF26103.1 Translation initiation factor IF-1 [Leuconostoc citreum LBAE C11] >CCF29280.1 Translation initiation factor IF-1 [Leuconostoc citreum LBAE E16] >CCJ65984.1 Translation initiation factor 1 [Leuconostoc pseudomesenteroides 4882] >AFS41071.1 translation initiation factor IF-1 [Leuconostoc gelidum JB7] >AFT81093.1 translation initiation factor IF-1 [Leuconostoc carnosum JB16] >EQC83164.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. cremoris TIFN8] >AHF18384.1 Translation initiation factor 1 [Leuconostoc mesenteroides KFRI-MG] >KDA47807.1 Translation initiation factor 1 [Leuconostoc pseudomesenteroides 1159] >KDA50401.1 Translation initiation factor 1 [Leuconostoc pseudomesenteroides PS12] >KDA52634.1 Translation initiation factor 1 [Leuconostoc mesenteroides subsp. cremoris T26] >KGB50091.1 translation initiation factor IF-1 [Leuconostoc mesenteroides P45] >CDX65429.1 Translation initiation factor IF-1 [Leuconostoc citreum] >CDX67199.1 Translation initiation factor IF-1 [Leuconostoc citreum] >AKP36243.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. dextranicum] >KMY77487.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. mesenteroides] >KMY79837.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. cremoris] >KMY82503.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. dextranicum] >KQB82840.1 translation initiation factor IF-1 [Leuconostoc lactis] >CUR64352.1 Translation initiation factor 1 InfA [Leuconostoc gelidum subsp. gasicomitatum KG16-1] >CUW19107.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >CUW15017.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >CUW17237.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >CUW14047.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >CUW03925.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >CUW03798.1 Translation initiation factor 1 [Leuconostoc gelidum subsp. gasicomitatum] >ANY11739.1 translation initiation factor IF-1 [Leuconostoc lactis] >AQN79457.1 translation initiation factor IF-1 [Leuconostoc garlicum] >ORI55381.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. cremoris] >ORI84141.1 translation initiation factor IF-1 [Leuconostoc lactis] >ORI86333.1 translation initiation factor IF-1 [Leuconostoc lactis] >OSP81526.1 translation initiation factor IF-1 [Leuconostoc citreum] >ARR88899.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. mesenteroides] >BAX69855.1 translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. suionicum] >BAX71850.1 translation initiation factor IF-1 [Leuconostoc mesenteroides] >ASR68731.1 translation initiation factor IF-1 [Leuconostoc mesenteroides] >PAK81880.1 translation initiation factor IF-1 [Leuconostoc mesenteroides] >PAV33164.1 translation initiation factor IF-1 [Leuconostoc lactis] >SOC28360.1 initiation factor IF-I [Leuconostoc gelidum subsp. gasicomitatum] >PND42071.1 translation initiation factor IF-1 [Leuconostoc mesenteroides] >SPE65310.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides] >SPE09648.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. suionicum] >SPD94705.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. suionicum] >SPE12723.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides] >SPH05214.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides subsp. suionicum] >SPI58611.1 Translation initiation factor IF-1 [Leuconostoc mesenteroides]) HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15 Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 0 Query: 74 SDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSR 144 +DVIE++G VKE+LPNA F+VE L AVI+ SGK+RKNF+R+L GD V VE+SPYDLT+GRITYR R Sbjct: 3 NDVIEIEGKVKETLPNAMFQVE-LENGAVILAHVSGKIRKNFIRILPGDRVTVEMSPYDLTKGRITYRFR 71 The following BLAST results are available for this feature:
BLAST of NO10G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G02340 ID=NO10G02340|Name=NO10G02340|organism=Nannochloropsis oceanica|type=gene|length=957bpback to top protein sequence of NO10G02340.1 >NO10G02340.1-protein ID=NO10G02340.1-protein|Name=NO10G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bpback to top Synonyms
Publications
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