NO10G02270, NO10G02270 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G02270 vs. NCBI_GenBank
Match: EWM25384.1 (photosystem ii 11 kd protein [Nannochloropsis gaditana]) HSP 1 Score: 292.4 bits (747), Expect = 1.200e-75 Identity = 151/190 (79.47%), Postives = 165/190 (86.84%), Query Frame = 0 Query: 36 MRVLSFFILIAPAVAFLAPVPSKPSSMALQ-AQCNNEAFSRSDVMAAGLTALAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225 MRVL+F +L APA FL P+ K S+ AL+ AQ +N+ FSRSD M +G+ A+AGL + LPALAAEEG VP +PVDL V P +F+LSKEYYKDA QVVNHMKYATFMNRDTPNYENIAKSVK EMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR Sbjct: 1 MRVLTFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
BLAST of NO10G02270 vs. NCBI_GenBank
Match: XP_009038478.1 (hypothetical protein AURANDRAFT_7494, partial [Aureococcus anophagefferens] >EGB06728.1 hypothetical protein AURANDRAFT_7494, partial [Aureococcus anophagefferens]) HSP 1 Score: 142.5 bits (358), Expect = 1.600e-30 Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 0 Query: 123 EYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225 +YY DA +VV HM+ AT +++ P+ E IA + K EM DFV++YRRF NV+GK SFSTLYTAINV+AGHY SYGPKFP+PEKRRKRL QE+ EI++NIK+ R Sbjct: 1 DYYTDAQKVVAHMRLATSLDKGAPDMEKIALNTKKEMIDFVAFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYAEIEKNIKKRR 102
BLAST of NO10G02270 vs. NCBI_GenBank
Match: XP_002288234.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93670.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 139.4 bits (350), Expect = 1.300e-29 Identity = 78/156 (50.00%), Postives = 101/156 (64.74%), Query Frame = 0 Query: 69 NNEAFSRSDVMAAGLTALAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225 +NE +R + A A +A P LA E VPA S P + L+ Y DA +V +HM AT + + + E+ K++K EM DFVSYYRRF VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EID+++KR+R Sbjct: 21 SNEQSARRQFLQTASNAAASTILAFPTLAFAEIEVPAQSTE--YTFPSDWGLTYNYEADAARVRSHMVTATGLAKGSERMEDFGKNLKKEMIDFVSYYRRFPQVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIDKSLKRSR 174
BLAST of NO10G02270 vs. NCBI_GenBank
Match: CEM34402.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 137.1 bits (344), Expect = 6.700e-29 Identity = 82/161 (50.93%), Postives = 101/161 (62.73%), Query Frame = 0 Query: 78 VMAAGLTALAGLGVALPAL------AAEEGSVPAMSPVDLSVAPK-------SFELSKEYYK-DATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225 V A LT LA + LP + A+E + P P + V K F +SK+ YK DA QV+NHMKYAT + P+ E I + +K EMTDF SYYRRFN V+G+ SFS +YTAINVMAGHY SYG K P+PEKRRKRL QEF I+R++ R R Sbjct: 70 VERAALTGLASIMGGLPLILTQEEALAQEAAAPVAPPPAVPVYEKGPKPEVSEFGISKKNYKDDARQVLNHMKYATLQVKGDPDMELINEGLKKEMTDFFSYYRRFNAVSGRTSFSNMYTAINVMAGHYQSYGYKVPLPEKRRKRLMQEFAMIERDLNRGR 230
BLAST of NO10G02270 vs. NCBI_GenBank
Match: CBN76956.1 (photosystem II 11 kDa protein [Ectocarpus siliculosus]) HSP 1 Score: 135.6 bits (340), Expect = 1.900e-28 Identity = 64/110 (58.18%), Postives = 85/110 (77.27%), Query Frame = 0 Query: 115 PKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225 P + L+K+YY DA+++V HM+Y T M + P +IA + K EM +FVS YRR +N+ GK S+S LYT+I+V+AGHYASYGPKFP+PEKRRKRL QE+T+I+R IKR R Sbjct: 97 PSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 206
BLAST of NO10G02270 vs. NCBI_GenBank
Match: GAX13785.1 (photosystem II Psb27 protein [Fistulifera solaris]) HSP 1 Score: 131.7 bits (330), Expect = 2.800e-27 Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 0 Query: 74 SRSDVMAAGLTALAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225 +R + + TA A L + A A E VP S P + L+ +Y +DA +V HM AT + + P+ E+ K++K EM DFVSYYRRF VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R Sbjct: 27 ARRNFLQTTATAGAALVLLPSAPAIAELEVPPQSTE--YTFPTDWGLTFKYEEDAAKVRKHMLIATALAKGAPDMEDFGKNLKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVVAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRGR 175
BLAST of NO10G02270 vs. NCBI_GenBank
Match: EJK47273.1 (hypothetical protein THAOC_34020 [Thalassiosira oceanica]) HSP 1 Score: 131.3 bits (329), Expect = 3.700e-27 Identity = 76/156 (48.72%), Postives = 100/156 (64.10%), Query Frame = 0 Query: 69 NNEAFSRSDVMAAGLTALAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225 ++E R + TA V LP +A+ E VP S P + L+ +Y DA +V HM AT + + + E+ K++K EM DFVSYYRRF VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KRNR Sbjct: 21 SSEQSGRRQFLQTASTAAVST-VVLPNVASAEIVVPEQSKE--YAFPSDWGLTYQYDTDAARVRAHMFTATGLAKGSERMEDFGKNLKKEMIDFVSYYRRFPQVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRNR 173
BLAST of NO10G02270 vs. NCBI_GenBank
Match: GAX21878.1 (photosystem II Psb27 protein [Fistulifera solaris]) HSP 1 Score: 131.3 bits (329), Expect = 3.700e-27 Identity = 75/143 (52.45%), Postives = 96/143 (67.13%), Query Frame = 0 Query: 84 TALAGLGVAL--PALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225 TA AG + L A A E VP S P + L+ +Y +DA +V HM AT + + P+ E+ K++K EM DFVSYYRRF VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R Sbjct: 35 TATAGAALVLLPTAPAWAELEVPPQSTE--YTFPTDWGLTFKYEEDAAKVRKHMLIATALAKGAPDMEDFGKNLKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVVAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRGR 175
BLAST of NO10G02270 vs. NCBI_GenBank
Match: XP_002177207.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51670.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 127.9 bits (320), Expect = 4.000e-26 Identity = 84/190 (44.21%), Postives = 112/190 (58.95%), Query Frame = 0 Query: 36 MRVLSFFILIAPAVAFLAPVPSK-PSSMALQAQCNNEAFSRSDVMAAGLTALAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225 M S F++ A A P + P S ++ A+ R+ + A +A LP A E VP + VD P + L+ +Y +DA +V HM AT M + + E K++K EM DFVSYYRRF VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R Sbjct: 1 MMKTSLFLIAAVTTCASAFTPMQMPDSSSVTAR-------RNFLQTASAAVIA---TTLPGAALAEIVVPPQT-VDYEF-PTDWGLTFKYEEDAVKVRQHMVVATGMAKGSEKMEEFGKNMKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVLAGHYTSYGFKYPLPEKRRKRLYQEYAEIEKSLKRGR 178
BLAST of NO10G02270 vs. NCBI_GenBank
Match: OEU09221.1 (hypothetical protein FRACYDRAFT_212328 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 127.9 bits (320), Expect = 4.000e-26 Identity = 78/181 (43.09%), Postives = 110/181 (60.77%), Query Frame = 0 Query: 45 IAPAVAFLAPVPSKPSSMALQAQCNNEAFSRSDVMAAGLTALAGLGVALPALAAEEGSVP-AMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225 +A A AF + +S AL+ A + + + AG T +P +A+ VP + D P + L+ +Y +DA +V HM AT + + E+ K +K EM DFVSYYRRF +AGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE++EI++++KR+R Sbjct: 13 VAVANAFSPNSSPQTASPALRRDFLKTAAATTAAVVAGTT-------FMPTIASAVVEVPEQFTKYDY---PTDWGLTFKYDEDAAKVRTHMVVATTLGKGADRMEDYGKEMKKEMVDFVSYYRRFPKIAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYSEIEKSLKRSR 183 The following BLAST results are available for this feature:
BLAST of NO10G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G02270 ID=NO10G02270|Name=NO10G02270|organism=Nannochloropsis oceanica|type=gene|length=1532bpback to top protein sequence of NO10G02270.1 >NO10G02270.1-protein ID=NO10G02270.1-protein|Name=NO10G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bpback to top Synonyms
Publications
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