NO10G02270, NO10G02270 (gene) Nannochloropsis oceanica

Overview
NameNO10G02270
Unique NameNO10G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1532
Alignment locationchr10:625669..627200 +

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Properties
Property NameValue
DescriptionPhotosystem ii 11 kd protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:625669..627200 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0010207photosystem II assembly
GO:0016043cellular component organization
GO:0015979photosynthesis
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR025585PSII_Pbs27
Homology
BLAST of NO10G02270 vs. NCBI_GenBank
Match: EWM25384.1 (photosystem ii 11 kd protein [Nannochloropsis gaditana])

HSP 1 Score: 292.4 bits (747), Expect = 1.200e-75
Identity = 151/190 (79.47%), Postives = 165/190 (86.84%), Query Frame = 0
Query:   36 MRVLSFFILIAPAVAFLAPVPSKPSSMALQ-AQCNNEAFSRSDVMAAGLTALAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225
            MRVL+F +L APA  FL P+  K S+ AL+ AQ +N+ FSRSD M +G+ A+AGL + LPALAAEEG VP  +PVDL V P +F+LSKEYYKDA QVVNHMKYATFMNRDTPNYENIAKSVK EMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR
Sbjct:    1 MRVLTFCLLAAPAACFLTPLAPKLSNTALKAAQADNDVFSRSDFMTSGVAAMAGLSLVLPALAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190          
BLAST of NO10G02270 vs. NCBI_GenBank
Match: XP_009038478.1 (hypothetical protein AURANDRAFT_7494, partial [Aureococcus anophagefferens] >EGB06728.1 hypothetical protein AURANDRAFT_7494, partial [Aureococcus anophagefferens])

HSP 1 Score: 142.5 bits (358), Expect = 1.600e-30
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 0
Query:  123 EYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225
            +YY DA +VV HM+ AT +++  P+ E IA + K EM DFV++YRRF NV+GK SFSTLYTAINV+AGHY SYGPKFP+PEKRRKRL QE+ EI++NIK+ R
Sbjct:    1 DYYTDAQKVVAHMRLATSLDKGAPDMEKIALNTKKEMIDFVAFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYAEIEKNIKKRR 102          
BLAST of NO10G02270 vs. NCBI_GenBank
Match: XP_002288234.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93670.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 139.4 bits (350), Expect = 1.300e-29
Identity = 78/156 (50.00%), Postives = 101/156 (64.74%), Query Frame = 0
Query:   69 NNEAFSRSDVMAAGLTALAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225
            +NE  +R   +     A A   +A P LA  E  VPA S       P  + L+  Y  DA +V +HM  AT + + +   E+  K++K EM DFVSYYRRF  VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EID+++KR+R
Sbjct:   21 SNEQSARRQFLQTASNAAASTILAFPTLAFAEIEVPAQSTE--YTFPSDWGLTYNYEADAARVRSHMVTATGLAKGSERMEDFGKNLKKEMIDFVSYYRRFPQVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIDKSLKRSR 174          
BLAST of NO10G02270 vs. NCBI_GenBank
Match: CEM34402.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 137.1 bits (344), Expect = 6.700e-29
Identity = 82/161 (50.93%), Postives = 101/161 (62.73%), Query Frame = 0
Query:   78 VMAAGLTALAGLGVALPAL------AAEEGSVPAMSPVDLSVAPK-------SFELSKEYYK-DATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225
            V  A LT LA +   LP +       A+E + P   P  + V  K        F +SK+ YK DA QV+NHMKYAT   +  P+ E I + +K EMTDF SYYRRFN V+G+ SFS +YTAINVMAGHY SYG K P+PEKRRKRL QEF  I+R++ R R
Sbjct:   70 VERAALTGLASIMGGLPLILTQEEALAQEAAAPVAPPPAVPVYEKGPKPEVSEFGISKKNYKDDARQVLNHMKYATLQVKGDPDMELINEGLKKEMTDFFSYYRRFNAVSGRTSFSNMYTAINVMAGHYQSYGYKVPLPEKRRKRLMQEFAMIERDLNRGR 230          
BLAST of NO10G02270 vs. NCBI_GenBank
Match: CBN76956.1 (photosystem II 11 kDa protein [Ectocarpus siliculosus])

HSP 1 Score: 135.6 bits (340), Expect = 1.900e-28
Identity = 64/110 (58.18%), Postives = 85/110 (77.27%), Query Frame = 0
Query:  115 PKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225
            P  + L+K+YY DA+++V HM+Y T M +  P   +IA + K EM +FVS YRR +N+ GK S+S LYT+I+V+AGHYASYGPKFP+PEKRRKRL QE+T+I+R IKR R
Sbjct:   97 PSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 206          
BLAST of NO10G02270 vs. NCBI_GenBank
Match: GAX13785.1 (photosystem II Psb27 protein [Fistulifera solaris])

HSP 1 Score: 131.7 bits (330), Expect = 2.800e-27
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 0
Query:   74 SRSDVMAAGLTALAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225
            +R + +    TA A L +   A A  E  VP  S       P  + L+ +Y +DA +V  HM  AT + +  P+ E+  K++K EM DFVSYYRRF  VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R
Sbjct:   27 ARRNFLQTTATAGAALVLLPSAPAIAELEVPPQSTE--YTFPTDWGLTFKYEEDAAKVRKHMLIATALAKGAPDMEDFGKNLKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVVAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRGR 175          
BLAST of NO10G02270 vs. NCBI_GenBank
Match: EJK47273.1 (hypothetical protein THAOC_34020 [Thalassiosira oceanica])

HSP 1 Score: 131.3 bits (329), Expect = 3.700e-27
Identity = 76/156 (48.72%), Postives = 100/156 (64.10%), Query Frame = 0
Query:   69 NNEAFSRSDVMAAGLTALAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225
            ++E   R   +    TA     V LP +A+ E  VP  S       P  + L+ +Y  DA +V  HM  AT + + +   E+  K++K EM DFVSYYRRF  VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KRNR
Sbjct:   21 SSEQSGRRQFLQTASTAAVST-VVLPNVASAEIVVPEQSKE--YAFPSDWGLTYQYDTDAARVRAHMFTATGLAKGSERMEDFGKNLKKEMIDFVSYYRRFPQVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRNR 173          
BLAST of NO10G02270 vs. NCBI_GenBank
Match: GAX21878.1 (photosystem II Psb27 protein [Fistulifera solaris])

HSP 1 Score: 131.3 bits (329), Expect = 3.700e-27
Identity = 75/143 (52.45%), Postives = 96/143 (67.13%), Query Frame = 0
Query:   84 TALAGLGVAL--PALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225
            TA AG  + L   A A  E  VP  S       P  + L+ +Y +DA +V  HM  AT + +  P+ E+  K++K EM DFVSYYRRF  VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R
Sbjct:   35 TATAGAALVLLPTAPAWAELEVPPQSTE--YTFPTDWGLTFKYEEDAAKVRKHMLIATALAKGAPDMEDFGKNLKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVVAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRGR 175          
BLAST of NO10G02270 vs. NCBI_GenBank
Match: XP_002177207.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51670.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 127.9 bits (320), Expect = 4.000e-26
Identity = 84/190 (44.21%), Postives = 112/190 (58.95%), Query Frame = 0
Query:   36 MRVLSFFILIAPAVAFLAPVPSK-PSSMALQAQCNNEAFSRSDVMAAGLTALAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225
            M   S F++ A      A  P + P S ++ A+       R+ +  A    +A     LP  A  E  VP  + VD    P  + L+ +Y +DA +V  HM  AT M + +   E   K++K EM DFVSYYRRF  VAGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE+ EI++++KR R
Sbjct:    1 MMKTSLFLIAAVTTCASAFTPMQMPDSSSVTAR-------RNFLQTASAAVIA---TTLPGAALAEIVVPPQT-VDYEF-PTDWGLTFKYEEDAVKVRQHMVVATGMAKGSEKMEEFGKNMKKEMVDFVSYYRRFPKVAGKPSFSTLYTSINVLAGHYTSYGFKYPLPEKRRKRLYQEYAEIEKSLKRGR 178          
BLAST of NO10G02270 vs. NCBI_GenBank
Match: OEU09221.1 (hypothetical protein FRACYDRAFT_212328 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 127.9 bits (320), Expect = 4.000e-26
Identity = 78/181 (43.09%), Postives = 110/181 (60.77%), Query Frame = 0
Query:   45 IAPAVAFLAPVPSKPSSMALQAQCNNEAFSRSDVMAAGLTALAGLGVALPALAAEEGSVP-AMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 225
            +A A AF      + +S AL+      A + +  + AG T        +P +A+    VP   +  D    P  + L+ +Y +DA +V  HM  AT + +     E+  K +K EM DFVSYYRRF  +AGKPSFSTLYT+INV+AGHY SYG K+P+PEKRRKRL QE++EI++++KR+R
Sbjct:   13 VAVANAFSPNSSPQTASPALRRDFLKTAAATTAAVVAGTT-------FMPTIASAVVEVPEQFTKYDY---PTDWGLTFKYDEDAAKVRTHMVVATTLGKGADRMEDYGKEMKKEMVDFVSYYRRFPKIAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYSEIEKSLKRSR 183          
The following BLAST results are available for this feature:
BLAST of NO10G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25384.11.200e-7579.47photosystem ii 11 kd protein [Nannochloropsis gadi... [more]
XP_009038478.11.600e-3064.71hypothetical protein AURANDRAFT_7494, partial [Aur... [more]
XP_002288234.11.300e-2950.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
CEM34402.16.700e-2950.93unnamed protein product [Vitrella brassicaformis C... [more]
CBN76956.11.900e-2858.18photosystem II 11 kDa protein [Ectocarpus siliculo... [more]
GAX13785.12.800e-2749.67photosystem II Psb27 protein [Fistulifera solaris][more]
EJK47273.13.700e-2748.72hypothetical protein THAOC_34020 [Thalassiosira oc... [more]
GAX21878.13.700e-2752.45photosystem II Psb27 protein [Fistulifera solaris][more]
XP_002177207.14.000e-2644.21predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU09221.14.000e-2643.09hypothetical protein FRACYDRAFT_212328 [Fragilario... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001096NSK001096Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02270.1NO10G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586037gene_3987Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g25gene5058Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02270.1NO10G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02270 ID=NO10G02270|Name=NO10G02270|organism=Nannochloropsis oceanica|type=gene|length=1532bp
TCGCAGGCTCCTTGAAGACGAGGCCTTTGATCTCATCATGCCTTGATGTA
GCCATTTTTCTCTGACGGCCAGCTTGTTGATATCGTGGCATTCTGCTTGT
ACTGAGCGTGAAGTGCTGAACGTGAATGTATCCATGCAGGCGGCTCCCGA
CAGCTCAGGGACGCAAACCTCATGCTCGATGCGCAGCCATCCGCTCATCG
TGGCTGTTGATTCAAACCCCTCCCTTACACAGGAGACTATGCGTGTCCTC
AGCTTCTTCATCCTAATTGCTCCGGCAGTGGCCTTCTTGGCTCCGGTGCC
CTCAAAGCCCAGCAGCATGGCTCTCCAGGCCCAGTGCAATAACGAGgtaa
gaagggagggaggcacagcgcgaggtgctgtagctcgatgtgggtccaaa
aggaagagaatgtcggtcgaaccccgcttcttgtcccaacccacacatgc
ctccactgtaaatacgtcgatgtgcagGCATTTAGCCGCTCGGACGTGAT
GGCCGCTGGCCTGACTGCCCTGGCTGGCCTTGGTGTAGCGCTGCCGGCTC
TGGCTGCAGAGGAGGGAAGCGTGCCTGCCATGTCCCCCGTGGACCTGAGT
GTGGCCCCCAAAAGCTTCGAGCTCTCAAAAGAGTACTACAAGGATGCCAC
GCAGGTTGTCAACCACATGAAgtaagttgatggtgaagtagagaatagag
aaagttgggatgactgtgaaagctattggcccttcgtcatcatacctgct
tcctataatgtgttgatttgacattcgctccgttctcctttgagacgtct
gacctcgtgaaggactttgccacgtatataaatgcgatccgcgagcaata
gggcacacttaaacgttcaaaagccgtcgctttagctcgcgctcacccct
caaaccgtttccaccctcccctcgcctcccacgacatcctctcacctttc
caccactagGTACGCTACCTTCATGAACCGCGACACGCCCAACTACGAGA
ACATTGCCAAGTCGGTCAAGACCGAGATGACAGACTTCGTTTCCTACTAT
CGTCGCTTCAACAATGTAGCGGGCAAGCCTTCCTTCTCCACTCTCTACAC
CGCCATCAACGTCATGGCTGGTCACTATGCATCGTACGGACCCAAGTTCC
CCATCCCCGAGAAACGCCGCAAGCGCCTCCAGCAGGAGTTCACGGAGATT
GACCGTAACATCAAGCGTAACCGATAAACATTGAAGCGACGGAAGTCATT
GAGAGAGACAAGAGAGATGGCGTCTAAGCATCACACAGGCAGGAAAAAAA
CAATCAGAAAAAACAAAACAACAGTGAACCGACATCGGGAGTAAAGGAGT
GGTAAGCTAGTAGCAGCAGCAGAGTAGCCGCATTTCATTAGTCTGTCTAC
CACATTGAGAAGAGGGAAAAAAAAAGGAGAAGGTATCCGATTCCATCGCT
ACTGTTTTCCTCCTCCTTTCACACCCCTTCCAAACGAAACAATTACAATT
GCCCGGAGTAAAAAAAAACTTAATTTTCAATG
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protein sequence of NO10G02270.1

>NO10G02270.1-protein ID=NO10G02270.1-protein|Name=NO10G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MQAAPDSSGTQTSCSMRSHPLIVAVDSNPSLTQETMRVLSFFILIAPAVA
FLAPVPSKPSSMALQAQCNNEAFSRSDVMAAGLTALAGLGVALPALAAEE
GSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHMKYATFMNRDTPNYEN
IAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFP
IPEKRRKRLQQEFTEIDRNIKRNR*
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Synonyms
Publications