NO10G02060, NO10G02060 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G02060 vs. NCBI_GenBank
Match: EWM25362.1 (Complex 1 LYR protein [Nannochloropsis gaditana]) HSP 1 Score: 134.8 bits (338), Expect = 1.400e-28 Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 0
Query: 1 MAAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAAREYQEGLKNLDMLKRQVLISHLYPSKRS 82
M+A PSR HVLGLFRSLLRQAGR+EDYNFRSYA+RRV + FQEGR+ SGE+AAREY++G+KNL+MLKRQ LISHLYPSKRS
Sbjct: 15 MSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRS 95
BLAST of NO10G02060 vs. NCBI_GenBank
Match: XP_002468160.1 (LYR motif-containing protein 4 [Sorghum bicolor] >EER95158.1 hypothetical protein SORBI_3001G432000 [Sorghum bicolor]) HSP 1 Score: 79.7 bits (195), Expect = 5.300e-12 Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 0
Query: 2 AAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALS-GEDAAREYQEGLKNLDMLKRQVLISHLY-PSKRSVME 85
AAAP+RT VL LFRSLLR A + DYN R Y +RR AF+E RAL+ AA + EG K L++ KRQ L+ LY P +SVME
Sbjct: 6 AAAPTRTEVLALFRSLLRTAKQFSDYNIREYTRRRAADAFRENRALADAPAAAAAFSEGKKQLEVAKRQALVYSLYAPKAKSVME 90
BLAST of NO10G02060 vs. NCBI_GenBank
Match: CBJ30897.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 77.8 bits (190), Expect = 2.000e-11 Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 0
Query: 3 AAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAAREYQEGLKNLDMLKRQVLISHLYPSKRSVMET 86
A PSRT VLGL++ L RQ + DYN+R YA RR F+ R + E+A +++G + L++++RQ IS LYP + SVMET
Sbjct: 2 AQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELEIVRRQAAISQLYPHQTSVMET 84
BLAST of NO10G02060 vs. NCBI_GenBank
Match: OQS02765.1 (hypothetical protein THRCLA_21331 [Thraustotheca clavata]) HSP 1 Score: 76.6 bits (187), Expect = 4.500e-11 Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 0
Query: 6 SRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAAREYQEGLKNLDMLKRQVLISHLYPSKRSVME 85
S+ VL L+R+LLRQA + ++Y FRSYAQRR+ F+ +++ G DA G + LD+L+RQV IS LYP ++SVME
Sbjct: 2 SQNKVLSLYRTLLRQASQYDNYTFRSYAQRRIKADFRAKKSVVGLDAKSAIAFGYEQLDLLRRQVAISKLYPGEKSVME 80
BLAST of NO10G02060 vs. NCBI_GenBank
Match: NP_001147354.1 (catalytic/ oxidoreductase, acting on NADH or NADPH [Zea mays] >ACG27067.1 catalytic/ oxidoreductase, acting on NADH or NADPH [Zea mays] >ACG27179.1 catalytic/ oxidoreductase, acting on NADH or NADPH [Zea mays] >ACG31659.1 catalytic/ oxidoreductase, acting on NADH or NADPH [Zea mays] >AQL07918.1 Catalytic/ oxidoreductase, acting on NADH or NADPH [Zea mays]) HSP 1 Score: 76.3 bits (186), Expect = 5.900e-11 Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 0
Query: 2 AAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALS-GEDAAREYQEGLKNLDMLKRQVLISHLY-PSKRSVME 85
AAAP+R VL LFRSLLR A + DYN R Y +RR +F+E RAL+ AA + EG K L++ KRQ ++ LY P +SVME
Sbjct: 3 AAAPTRAEVLSLFRSLLRTAKKFSDYNIREYTRRRAADSFRENRALADASAAAAAFSEGKKQLEVAKRQAVVYSLYAPKAKSVME 87
BLAST of NO10G02060 vs. NCBI_GenBank
Match: EAY78428.1 (hypothetical protein OsI_33519 [Oryza sativa Indica Group]) HSP 1 Score: 75.5 bits (184), Expect = 1.000e-10 Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0
Query: 1 MAAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRAL-SGEDAAREYQEGLKNLDMLKRQVLISHLY-PSKRSVME 85
MAAAP+R L LFRSLLR A + DYN R YA+RR AF+E RAL AA + +G K L++ KRQ ++ LY P +S+ME
Sbjct: 1 MAAAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRALGDAAAAAAVFADGKKQLEVAKRQAVVYSLYAPKAKSIME 86
BLAST of NO10G02060 vs. NCBI_GenBank
Match: XP_015612910.1 (PREDICTED: LYR motif-containing protein 4 [Oryza sativa Japonica Group] >AAK98679.1 Putative CGI-203 homolog [Oryza sativa Japonica Group] >AAP53692.1 complex 1 family protein, putative, expressed [Oryza sativa Japonica Group] >BAF26479.1 Os10g0406600 [Oryza sativa Japonica Group] >EAZ16023.1 hypothetical protein OsJ_31469 [Oryza sativa Japonica Group] >BAH01074.1 unnamed protein product [Oryza sativa Japonica Group] >BAT10778.1 Os10g0406600 [Oryza sativa Japonica Group]) HSP 1 Score: 75.1 bits (183), Expect = 1.300e-10 Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0
Query: 1 MAAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRAL-SGEDAAREYQEGLKNLDMLKRQVLISHLY-PSKRSVME 85
MAAAP+R L LFRSLLR A + DYN R YA+RR AF+E RAL AA + +G K L++ KRQ ++ LY P +S+ME
Sbjct: 1 MAAAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRALGDAVAAAAVFADGKKQLEVAKRQAVVYSLYAPKAKSIME 86
BLAST of NO10G02060 vs. NCBI_GenBank
Match: OEU20218.1 (hypothetical protein FRACYDRAFT_274699 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 75.1 bits (183), Expect = 1.300e-10 Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 0
Query: 13 LFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAAREYQEGLKNLDMLKRQVLISHLYPSKRSVMETEP 88
LFR+L++QA +M DYNFR+YA RR+ F + R L G A +EG + L +L RQ +IS LYPS +SVM+T P
Sbjct: 8 LFRNLMKQATQMNDYNFRAYAIRRIRGGFDQNRLLEGNTAQMAIKEGQEQLAVLTRQSVISRLYPSAKSVMDTLP 82
BLAST of NO10G02060 vs. NCBI_GenBank
Match: OQR98224.1 (hypothetical protein ACHHYP_08976 [Achlya hypogyna]) HSP 1 Score: 74.7 bits (182), Expect = 1.700e-10 Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query: 10 VLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAAREYQEGLKNLDMLKRQVLISHLYPSKRSVMET 86
VL L+R+LLR+A + E+Y FRSYAQRR+ F+ + SG DA G + L +L+RQV IS LYP ++SVME+
Sbjct: 5 VLSLYRTLLREAAQYENYTFRSYAQRRIKADFRANKTTSGADAQLAITFGTEQLALLRRQVAISKLYPGEKSVMES 80
BLAST of NO10G02060 vs. NCBI_GenBank
Match: XP_014172533.1 (iron-sulfur cluster biosynthesis protein [Grosmannia clavigera kw1407] >EFX03051.1 iron-sulfur cluster biosynthesis protein [Grosmannia clavigera kw1407]) HSP 1 Score: 74.3 bits (181), Expect = 2.200e-10 Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 0
Query: 2 AAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAARE-YQEGLKNLDMLKRQVLISHLYPSKRSVMET----EPHKAPTL 94
A P +L L+R LLRQA R +YNFR YA+RR AF+E RA S +E Q+GLK+L +++RQ I + Y S+R V+ET + H AP L
Sbjct: 6 AGRPEALQILSLYRQLLRQADRFPEYNFREYARRRTQDAFREHRAESDPRRVQELVQQGLKDLRVMQRQSTIGNFYRSERLVVETSGQAKSHNAPLL 102 The following BLAST results are available for this feature:
BLAST of NO10G02060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G02060 ID=NO10G02060|Name=NO10G02060|organism=Nannochloropsis oceanica|type=gene|length=285bpback to top protein sequence of NO10G02060.1 >NO10G02060.1-protein ID=NO10G02060.1-protein|Name=NO10G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=95bpback to top Synonyms
Publications
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