NO10G02060, NO10G02060 (gene) Nannochloropsis oceanica

Overview
NameNO10G02060
Unique NameNO10G02060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length285
Alignment locationchr10:570293..570577 +

Link to JBrowse

Properties
Property NameValue
DescriptionComplex 1 LYR protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:570293..570577 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of NO10G02060 vs. NCBI_GenBank
Match: EWM25362.1 (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 134.8 bits (338), Expect = 1.400e-28
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 0
Query:    1 MAAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAAREYQEGLKNLDMLKRQVLISHLYPSKRS 82
            M+A PSR HVLGLFRSLLRQAGR+EDYNFRSYA+RRV + FQEGR+ SGE+AAREY++G+KNL+MLKRQ LISHLYPSKRS
Sbjct:   15 MSATPSRQHVLGLFRSLLRQAGRLEDYNFRSYAKRRVALGFQEGRSSSGEEAAREYRDGVKNLEMLKRQALISHLYPSKRS 95          
BLAST of NO10G02060 vs. NCBI_GenBank
Match: XP_002468160.1 (LYR motif-containing protein 4 [Sorghum bicolor] >EER95158.1 hypothetical protein SORBI_3001G432000 [Sorghum bicolor])

HSP 1 Score: 79.7 bits (195), Expect = 5.300e-12
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 0
Query:    2 AAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALS-GEDAAREYQEGLKNLDMLKRQVLISHLY-PSKRSVME 85
            AAAP+RT VL LFRSLLR A +  DYN R Y +RR   AF+E RAL+    AA  + EG K L++ KRQ L+  LY P  +SVME
Sbjct:    6 AAAPTRTEVLALFRSLLRTAKQFSDYNIREYTRRRAADAFRENRALADAPAAAAAFSEGKKQLEVAKRQALVYSLYAPKAKSVME 90          
BLAST of NO10G02060 vs. NCBI_GenBank
Match: CBJ30897.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.8 bits (190), Expect = 2.000e-11
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 0
Query:    3 AAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAAREYQEGLKNLDMLKRQVLISHLYPSKRSVMET 86
            A PSRT VLGL++ L RQ   + DYN+R YA RR    F+  R  + E+A   +++G + L++++RQ  IS LYP + SVMET
Sbjct:    2 AQPSRTAVLGLYKGLRRQGALLMDYNYREYALRRARRGFELARGFAPEEAEAAFKKGQRELEIVRRQAAISQLYPHQTSVMET 84          
BLAST of NO10G02060 vs. NCBI_GenBank
Match: OQS02765.1 (hypothetical protein THRCLA_21331 [Thraustotheca clavata])

HSP 1 Score: 76.6 bits (187), Expect = 4.500e-11
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 0
Query:    6 SRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAAREYQEGLKNLDMLKRQVLISHLYPSKRSVME 85
            S+  VL L+R+LLRQA + ++Y FRSYAQRR+   F+  +++ G DA      G + LD+L+RQV IS LYP ++SVME
Sbjct:    2 SQNKVLSLYRTLLRQASQYDNYTFRSYAQRRIKADFRAKKSVVGLDAKSAIAFGYEQLDLLRRQVAISKLYPGEKSVME 80          
BLAST of NO10G02060 vs. NCBI_GenBank
Match: NP_001147354.1 (catalytic/ oxidoreductase, acting on NADH or NADPH [Zea mays] >ACG27067.1 catalytic/ oxidoreductase, acting on NADH or NADPH [Zea mays] >ACG27179.1 catalytic/ oxidoreductase, acting on NADH or NADPH [Zea mays] >ACG31659.1 catalytic/ oxidoreductase, acting on NADH or NADPH [Zea mays] >AQL07918.1 Catalytic/ oxidoreductase, acting on NADH or NADPH [Zea mays])

HSP 1 Score: 76.3 bits (186), Expect = 5.900e-11
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 0
Query:    2 AAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALS-GEDAAREYQEGLKNLDMLKRQVLISHLY-PSKRSVME 85
            AAAP+R  VL LFRSLLR A +  DYN R Y +RR   +F+E RAL+    AA  + EG K L++ KRQ ++  LY P  +SVME
Sbjct:    3 AAAPTRAEVLSLFRSLLRTAKKFSDYNIREYTRRRAADSFRENRALADASAAAAAFSEGKKQLEVAKRQAVVYSLYAPKAKSVME 87          
BLAST of NO10G02060 vs. NCBI_GenBank
Match: EAY78428.1 (hypothetical protein OsI_33519 [Oryza sativa Indica Group])

HSP 1 Score: 75.5 bits (184), Expect = 1.000e-10
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0
Query:    1 MAAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRAL-SGEDAAREYQEGLKNLDMLKRQVLISHLY-PSKRSVME 85
            MAAAP+R   L LFRSLLR A +  DYN R YA+RR   AF+E RAL     AA  + +G K L++ KRQ ++  LY P  +S+ME
Sbjct:    1 MAAAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRALGDAAAAAAVFADGKKQLEVAKRQAVVYSLYAPKAKSIME 86          
BLAST of NO10G02060 vs. NCBI_GenBank
Match: XP_015612910.1 (PREDICTED: LYR motif-containing protein 4 [Oryza sativa Japonica Group] >AAK98679.1 Putative CGI-203 homolog [Oryza sativa Japonica Group] >AAP53692.1 complex 1 family protein, putative, expressed [Oryza sativa Japonica Group] >BAF26479.1 Os10g0406600 [Oryza sativa Japonica Group] >EAZ16023.1 hypothetical protein OsJ_31469 [Oryza sativa Japonica Group] >BAH01074.1 unnamed protein product [Oryza sativa Japonica Group] >BAT10778.1 Os10g0406600 [Oryza sativa Japonica Group])

HSP 1 Score: 75.1 bits (183), Expect = 1.300e-10
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0
Query:    1 MAAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRAL-SGEDAAREYQEGLKNLDMLKRQVLISHLY-PSKRSVME 85
            MAAAP+R   L LFRSLLR A +  DYN R YA+RR   AF+E RAL     AA  + +G K L++ KRQ ++  LY P  +S+ME
Sbjct:    1 MAAAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRALGDAVAAAAVFADGKKQLEVAKRQAVVYSLYAPKAKSIME 86          
BLAST of NO10G02060 vs. NCBI_GenBank
Match: OEU20218.1 (hypothetical protein FRACYDRAFT_274699 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 75.1 bits (183), Expect = 1.300e-10
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 0
Query:   13 LFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAAREYQEGLKNLDMLKRQVLISHLYPSKRSVMETEP 88
            LFR+L++QA +M DYNFR+YA RR+   F + R L G  A    +EG + L +L RQ +IS LYPS +SVM+T P
Sbjct:    8 LFRNLMKQATQMNDYNFRAYAIRRIRGGFDQNRLLEGNTAQMAIKEGQEQLAVLTRQSVISRLYPSAKSVMDTLP 82          
BLAST of NO10G02060 vs. NCBI_GenBank
Match: OQR98224.1 (hypothetical protein ACHHYP_08976 [Achlya hypogyna])

HSP 1 Score: 74.7 bits (182), Expect = 1.700e-10
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query:   10 VLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAAREYQEGLKNLDMLKRQVLISHLYPSKRSVMET 86
            VL L+R+LLR+A + E+Y FRSYAQRR+   F+  +  SG DA      G + L +L+RQV IS LYP ++SVME+
Sbjct:    5 VLSLYRTLLREAAQYENYTFRSYAQRRIKADFRANKTTSGADAQLAITFGTEQLALLRRQVAISKLYPGEKSVMES 80          
BLAST of NO10G02060 vs. NCBI_GenBank
Match: XP_014172533.1 (iron-sulfur cluster biosynthesis protein [Grosmannia clavigera kw1407] >EFX03051.1 iron-sulfur cluster biosynthesis protein [Grosmannia clavigera kw1407])

HSP 1 Score: 74.3 bits (181), Expect = 2.200e-10
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 0
Query:    2 AAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGEDAARE-YQEGLKNLDMLKRQVLISHLYPSKRSVMET----EPHKAPTL 94
            A  P    +L L+R LLRQA R  +YNFR YA+RR   AF+E RA S     +E  Q+GLK+L +++RQ  I + Y S+R V+ET    + H AP L
Sbjct:    6 AGRPEALQILSLYRQLLRQADRFPEYNFREYARRRTQDAFREHRAESDPRRVQELVQQGLKDLRVMQRQSTIGNFYRSERLVVETSGQAKSHNAPLL 102          
The following BLAST results are available for this feature:
BLAST of NO10G02060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25362.11.400e-2880.25Complex 1 LYR protein [Nannochloropsis gaditana][more]
XP_002468160.15.300e-1254.12LYR motif-containing protein 4 [Sorghum bicolor] >... [more]
CBJ30897.12.000e-1145.78conserved unknown protein [Ectocarpus siliculosus][more]
OQS02765.14.500e-1149.37hypothetical protein THRCLA_21331 [Thraustotheca c... [more]
NP_001147354.15.900e-1150.59catalytic/ oxidoreductase, acting on NADH or NADPH... [more]
EAY78428.11.000e-1050.00hypothetical protein OsI_33519 [Oryza sativa Indic... [more]
XP_015612910.11.300e-1050.00PREDICTED: LYR motif-containing protein 4 [Oryza s... [more]
OEU20218.11.300e-1050.67hypothetical protein FRACYDRAFT_274699 [Fragilario... [more]
OQR98224.11.700e-1050.00hypothetical protein ACHHYP_08976 [Achlya hypogyna... [more]
XP_014172533.12.200e-1045.36iron-sulfur cluster biosynthesis protein [Grosmann... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL054nonsL054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR012ngnoR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001054NSK001054Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02060.1NO10G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586126gene_4008Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g70gene5099Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02060.1NO10G02060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02060 ID=NO10G02060|Name=NO10G02060|organism=Nannochloropsis oceanica|type=gene|length=285bp
ATGGCTGCCGCTCCCTCCCGCACGCACGTCCTAGGCCTATTTCGGTCCTT
ACTCCGCCAAGCCGGACGGATGGAGGACTACAACTTTCGTTCCTACGCCC
AGCGCCGCGTGACCATGGCGTTCCAGGAAGGACGTGCACTGAGTGGGGAG
GATGCCGCACGGGAATATCAGGAGGGACTCAAAAACCTGGATATGCTGAA
GAGGCAAGTTCTCATCAGCCACTTGTACCCGTCCAAGCGCTCCGTCATGG
AGACTGAACCGCACAAGGCACCCACCCTGGGCTAG
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protein sequence of NO10G02060.1

>NO10G02060.1-protein ID=NO10G02060.1-protein|Name=NO10G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MAAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGE
DAAREYQEGLKNLDMLKRQVLISHLYPSKRSVMETEPHKAPTLG*
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Synonyms
Publications