NO10G01990, NO10G01990 (gene) Nannochloropsis oceanica

Overview
NameNO10G01990
Unique NameNO10G01990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length730
Alignment locationchr10:552042..552771 +

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Properties
Property NameValue
DescriptionSm-like protein LSm2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:552042..552771 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR016654U6_snRNA_Lsm2
IPR001163Ribonucl_LSM
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
BLAST of NO10G01990 vs. NCBI_GenBank
Match: CBN79246.1 (Sm-like protein LSm2 [Ectocarpus siliculosus])

HSP 1 Score: 146.4 bits (368), Expect = 4.700e-32
Identity = 71/94 (75.53%), Postives = 83/94 (88.30%), Query Frame = 0
Query:    1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGK 95
            MLFYSFFK LVGKE+AVELKNDV LTG LHSVDQYLNVKL DVQVV  ERYPQL A+KN FIRGSV+R+IQ+P+++VD +LLQD+CRK++  GK
Sbjct:    1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94          
BLAST of NO10G01990 vs. NCBI_GenBank
Match: CBY24778.1 (unnamed protein product [Oikopleura dioica] >CBY35020.1 unnamed protein product [Oikopleura dioica])

HSP 1 Score: 134.4 bits (337), Expect = 1.900e-28
Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 0
Query:    1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGK 95
            MLFYSFFK LVGKEV VELKND+ +TG LHSVDQYLN+KL D+ V ++E+YP LL+VKN FIRGSV+R+++LPA E+D QLLQD+ RK+ +S +
Sbjct:    1 MLFYSFFKSLVGKEVTVELKNDLAITGTLHSVDQYLNIKLNDIFVTEQEKYPHLLSVKNCFIRGSVVRYVRLPAEEIDHQLLQDTARKEAESNR 94          
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_004925974.1 (U6 snRNA-associated Sm-like protein LSm2 [Bombyx mori])

HSP 1 Score: 132.9 bits (333), Expect = 5.400e-28
Identity = 61/89 (68.54%), Postives = 75/89 (84.27%), Query Frame = 0
Query:    1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKD 90
            MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V+  E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQD+ RK+
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKE 89          
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_002735441.1 (PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Saccoglossus kowalevskii])

HSP 1 Score: 132.5 bits (332), Expect = 7.100e-28
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 0
Query:    1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGKGR 97
            MLFYSFFK LVGK+V VELKND+ + G LHSVDQ+LN+KL D+ V   E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQD+ RK+    KG+
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAAQSKGQ 96          
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_021197005.1 (U6 snRNA-associated Sm-like protein LSm2 [Helicoverpa armigera] >XP_022824200.1 U6 snRNA-associated Sm-like protein LSm2 [Spodoptera litura] >KOB70686.1 U6 snRNA-associated Sm-like protein LSm2 [Operophtera brumata])

HSP 1 Score: 132.5 bits (332), Expect = 7.100e-28
Identity = 61/89 (68.54%), Postives = 75/89 (84.27%), Query Frame = 0
Query:    1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKD 90
            MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V+  E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQD+ RK+
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKE 89          
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_015840997.1 (PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Tribolium castaneum] >EEZ97873.1 U6 snRNA-associated Sm-like protein LSm2 [Tribolium castaneum])

HSP 1 Score: 132.1 bits (331), Expect = 9.200e-28
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 0
Query:    1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKD 90
            MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V   E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQDS RK+
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDTEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDSARKE 89          
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_018569789.1 (U6 snRNA-associated Sm-like protein LSm2 [Anoplophora glabripennis])

HSP 1 Score: 132.1 bits (331), Expect = 9.200e-28
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 0
Query:    1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKD 90
            MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V   E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQDS RK+
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDTEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDSARKE 89          
BLAST of NO10G01990 vs. NCBI_GenBank
Match: CCI50726.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 131.7 bits (330), Expect = 1.200e-27
Identity = 63/94 (67.02%), Postives = 78/94 (82.98%), Query Frame = 0
Query:    1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGK 95
            MLFYSFFK LVGKEVAVELKNDV L G LHSVDQYLN+KL  V +V+ ++YPQL+ +KN FIRGSVIR++Q+PA EVD+ LLQD+ R++  + K
Sbjct:    1 MLFYSFFKTLVGKEVAVELKNDVALMGTLHSVDQYLNIKLMGVSIVESDKYPQLMNMKNCFIRGSVIRYVQIPAQEVDIDLLQDAARREANANK 94          
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_023231343.1 (U6 snRNA-associated Sm-like protein LSm2 [Centruroides sculpturatus])

HSP 1 Score: 131.7 bits (330), Expect = 1.200e-27
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 0
Query:    1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGK 95
            MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V   E+YP +L+VKN FIRGSVIR++QLPA EVD QLLQD+ RK+    K
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVIRYVQLPADEVDTQLLQDAARKEAAQNK 94          
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_002414155.1 (conserved hypothetical protein [Ixodes scapularis] >EEC17463.1 conserved hypothetical protein [Ixodes scapularis])

HSP 1 Score: 131.3 bits (329), Expect = 1.600e-27
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 0
Query:    1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQS 93
            MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V   E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQD+ RK+  S
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDINVTDTEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEASS 92          
The following BLAST results are available for this feature:
BLAST of NO10G01990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN79246.14.700e-3275.53Sm-like protein LSm2 [Ectocarpus siliculosus][more]
CBY24778.11.900e-2867.02unnamed protein product [Oikopleura dioica] >CBY35... [more]
XP_004925974.15.400e-2868.54U6 snRNA-associated Sm-like protein LSm2 [Bombyx m... [more]
XP_002735441.17.100e-2864.58PREDICTED: U6 snRNA-associated Sm-like protein LSm... [more]
XP_021197005.17.100e-2868.54U6 snRNA-associated Sm-like protein LSm2 [Helicove... [more]
XP_015840997.19.200e-2869.66PREDICTED: U6 snRNA-associated Sm-like protein LSm... [more]
XP_018569789.19.200e-2869.66U6 snRNA-associated Sm-like protein LSm2 [Anoploph... [more]
CCI50726.11.200e-2767.02unnamed protein product [Albugo candida][more]
XP_023231343.11.200e-2767.02U6 snRNA-associated Sm-like protein LSm2 [Centruro... [more]
XP_002414155.11.600e-2767.39conserved hypothetical protein [Ixodes scapularis]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL054nonsL054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR012ngnoR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001060NSK001060Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01990.1NO10G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586142gene_4014Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01990.1NO10G01990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01990 ID=NO10G01990|Name=NO10G01990|organism=Nannochloropsis oceanica|type=gene|length=730bp
CTCACGTGTCTCTCTCTTTACCCTGTACACGGGCAACCCTTCAGTAGCAA
GTACTTTAACAACGGCAAGTCAATCTGCCCAGCAGCATCTTTTCATGgta
agtgaagggggggtataatgaagagaataggacctatgctagccgactgg
cggagtccgtgccagcctgccaatctatacatgtagccctcaccgataca
accactcccaaaccgtagCTGTTTTACTCTTTTTTCAAGAAACTGGTAGG
CAAAGAGGTGGCGGTAGAGCTTAAAAACGATGTAGAGCTAACGGGCAAGC
TGCACTCTGTCGATCAGTACCTGAATGTGAAGCTGGAGGATGTGCAGGTG
GTCAAGAAGGAGCGATACCCCCAATTGgtacgtgggggagggttcgggat
ggaacacagatcatataattcacgttcgagattgccgagattggcaggcc
gcggaacgttgtcccatgtgttcactctgcccattcccatccaccttccg
tccttccaccacgcacgctcagCTGGCTGTCAAGAACGTCTTCATCCGCG
GATCGGTCATCCGATTTATCCAACTGCCGGCCAGCGAGGTGGACGTGCAG
CTTCTACAAGACTCCTGTCGCAAGGACAACCAAAGCGGCAAAGGAAGATA
AGAAGCGCGTCCCGGTTGTACGTTTTGCCCATGGACAGGGAATGCGAATA
AAAGTAAAAAACAAAACATGAAAACTGCAC
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protein sequence of NO10G01990.1

>NO10G01990.1-protein ID=NO10G01990.1-protein|Name=NO10G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKER
YPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGKGR*
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Synonyms
Publications