NO10G01990, NO10G01990 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G01990 vs. NCBI_GenBank
Match: CBN79246.1 (Sm-like protein LSm2 [Ectocarpus siliculosus]) HSP 1 Score: 146.4 bits (368), Expect = 4.700e-32 Identity = 71/94 (75.53%), Postives = 83/94 (88.30%), Query Frame = 0 Query: 1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGK 95 MLFYSFFK LVGKE+AVELKNDV LTG LHSVDQYLNVKL DVQVV ERYPQL A+KN FIRGSV+R+IQ+P+++VD +LLQD+CRK++ GK Sbjct: 1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94
BLAST of NO10G01990 vs. NCBI_GenBank
Match: CBY24778.1 (unnamed protein product [Oikopleura dioica] >CBY35020.1 unnamed protein product [Oikopleura dioica]) HSP 1 Score: 134.4 bits (337), Expect = 1.900e-28 Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 0 Query: 1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGK 95 MLFYSFFK LVGKEV VELKND+ +TG LHSVDQYLN+KL D+ V ++E+YP LL+VKN FIRGSV+R+++LPA E+D QLLQD+ RK+ +S + Sbjct: 1 MLFYSFFKSLVGKEVTVELKNDLAITGTLHSVDQYLNIKLNDIFVTEQEKYPHLLSVKNCFIRGSVVRYVRLPAEEIDHQLLQDTARKEAESNR 94
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_004925974.1 (U6 snRNA-associated Sm-like protein LSm2 [Bombyx mori]) HSP 1 Score: 132.9 bits (333), Expect = 5.400e-28 Identity = 61/89 (68.54%), Postives = 75/89 (84.27%), Query Frame = 0 Query: 1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKD 90 MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V+ E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQD+ RK+ Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKE 89
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_002735441.1 (PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Saccoglossus kowalevskii]) HSP 1 Score: 132.5 bits (332), Expect = 7.100e-28 Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 0 Query: 1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGKGR 97 MLFYSFFK LVGK+V VELKND+ + G LHSVDQ+LN+KL D+ V E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQD+ RK+ KG+ Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAAQSKGQ 96
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_021197005.1 (U6 snRNA-associated Sm-like protein LSm2 [Helicoverpa armigera] >XP_022824200.1 U6 snRNA-associated Sm-like protein LSm2 [Spodoptera litura] >KOB70686.1 U6 snRNA-associated Sm-like protein LSm2 [Operophtera brumata]) HSP 1 Score: 132.5 bits (332), Expect = 7.100e-28 Identity = 61/89 (68.54%), Postives = 75/89 (84.27%), Query Frame = 0 Query: 1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKD 90 MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V+ E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQD+ RK+ Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKE 89
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_015840997.1 (PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Tribolium castaneum] >EEZ97873.1 U6 snRNA-associated Sm-like protein LSm2 [Tribolium castaneum]) HSP 1 Score: 132.1 bits (331), Expect = 9.200e-28 Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 0 Query: 1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKD 90 MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQDS RK+ Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDTEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDSARKE 89
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_018569789.1 (U6 snRNA-associated Sm-like protein LSm2 [Anoplophora glabripennis]) HSP 1 Score: 132.1 bits (331), Expect = 9.200e-28 Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 0 Query: 1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKD 90 MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQDS RK+ Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDTEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDSARKE 89
BLAST of NO10G01990 vs. NCBI_GenBank
Match: CCI50726.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 131.7 bits (330), Expect = 1.200e-27 Identity = 63/94 (67.02%), Postives = 78/94 (82.98%), Query Frame = 0 Query: 1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGK 95 MLFYSFFK LVGKEVAVELKNDV L G LHSVDQYLN+KL V +V+ ++YPQL+ +KN FIRGSVIR++Q+PA EVD+ LLQD+ R++ + K Sbjct: 1 MLFYSFFKTLVGKEVAVELKNDVALMGTLHSVDQYLNIKLMGVSIVESDKYPQLMNMKNCFIRGSVIRYVQIPAQEVDIDLLQDAARREANANK 94
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_023231343.1 (U6 snRNA-associated Sm-like protein LSm2 [Centruroides sculpturatus]) HSP 1 Score: 131.7 bits (330), Expect = 1.200e-27 Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 0 Query: 1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGK 95 MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V E+YP +L+VKN FIRGSVIR++QLPA EVD QLLQD+ RK+ K Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVIRYVQLPADEVDTQLLQDAARKEAAQNK 94
BLAST of NO10G01990 vs. NCBI_GenBank
Match: XP_002414155.1 (conserved hypothetical protein [Ixodes scapularis] >EEC17463.1 conserved hypothetical protein [Ixodes scapularis]) HSP 1 Score: 131.3 bits (329), Expect = 1.600e-27 Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 0 Query: 1 MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQS 93 MLFYSFFK LVGK+V VELKND+ + G LHSVDQYLN+KL D+ V E+YP +L+VKN FIRGSV+R++QLPA EVD QLLQD+ RK+ S Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDINVTDTEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEASS 92 The following BLAST results are available for this feature:
BLAST of NO10G01990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G01990 ID=NO10G01990|Name=NO10G01990|organism=Nannochloropsis oceanica|type=gene|length=730bpback to top protein sequence of NO10G01990.1 >NO10G01990.1-protein ID=NO10G01990.1-protein|Name=NO10G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=97bpback to top Synonyms
Publications
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