NO10G01890, NO10G01890 (gene) Nannochloropsis oceanica

Overview
NameNO10G01890
Unique NameNO10G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length327
Alignment locationchr10:526692..527018 +

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Properties
Property NameValue
DescriptionFolate biopterin transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:526692..527018 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO10G01890 vs. NCBI_GenBank
Match: EWM25378.1 (folate biopterin transporter [Nannochloropsis gaditana])

HSP 1 Score: 135.2 bits (339), Expect = 1.200e-28
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 0
Query:    1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSK 83
            MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALG ELGA LTSALGVTE NF+NLGLLI ICNLS+LLSLPFLSLL  E  K
Sbjct:  443 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGTELGALLTSALGVTERNFENLGLLIIICNLSSLLSLPFLSLLGNEDDK 524          
BLAST of NO10G01890 vs. NCBI_GenBank
Match: CBN78031.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 110.2 bits (274), Expect = 4.200e-21
Identity = 53/73 (72.60%), Postives = 65/73 (89.04%), Query Frame = 0
Query:    1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFL 74
            MPTLVL+ARLCPPG+EGTLFA LMS+FNG   +G+ELGA+LT  +GVTE +F+NLG+LIAICN+S+LL LPFL
Sbjct:  346 MPTLVLSARLCPPGVEGTLFALLMSIFNGGAIVGSELGAYLTRVMGVTEADFRNLGMLIAICNVSSLLPLPFL 418          
BLAST of NO10G01890 vs. NCBI_GenBank
Match: XP_006651903.1 (PREDICTED: folate-biopterin transporter 1, chloroplastic-like, partial [Oryza brachyantha])

HSP 1 Score: 107.1 bits (266), Expect = 3.600e-20
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 0
Query:    1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDAR 91
            MP LVLAA+LCPPG+E TLFATLMS+ N  G  G  LGA LT  LGVT++NFQNL LLI +CNLS+LL LP L LLP ++S  G+ G  +
Sbjct:  393 MPVLVLAAKLCPPGVEATLFATLMSISNAGGVTGGLLGAGLTQLLGVTKDNFQNLALLIVVCNLSSLLPLPLLGLLP-DESPGGDNGQTK 481          
BLAST of NO10G01890 vs. NCBI_GenBank
Match: CEM01664.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 106.7 bits (265), Expect = 4.700e-20
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 0
Query:    1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLP 78
            +PTLVLAA+LCPPG+EGTLFATLMS+FN A  +G ELGA LTSA GVT+++F NLG L+ +CN+S+L  L F++LLP
Sbjct:  415 LPTLVLAAQLCPPGVEGTLFATLMSIFNAAAGVGTELGAVLTSAFGVTDSDFTNLGALVTLCNVSSLFPLLFINLLP 491          
BLAST of NO10G01890 vs. NCBI_GenBank
Match: WP_082650664.1 (folate/biopterin family MFS transporter [Mastigocoleus testarum])

HSP 1 Score: 106.7 bits (265), Expect = 4.700e-20
Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 0
Query:    1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARGVE 94
            MP L+LAARLCPPGIE TLFA LMSV N AG +  ELGA LT  LGVTE NF NL LL+ I NLSTLL LPFL+ LPA  S++    ++ G+E
Sbjct:  374 MPVLILAARLCPPGIEATLFALLMSVSNMAGLVSHELGAGLTHLLGVTETNFDNLWLLVVISNLSTLLPLPFLNWLPAANSQNQNPSNSNGLE 466          
BLAST of NO10G01890 vs. NCBI_GenBank
Match: XP_005718642.1 (unnamed protein product [Chondrus crispus] >CDF38737.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 105.9 bits (263), Expect = 8.000e-20
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 0
Query:    1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARG 92
            MPTLVLAARLCPPG+EGTLFA LMS++N +G   +ELGA LT ALGVTE NF  L +L+AIC+LS LL LP L LL  ++ +     DA G
Sbjct:  424 MPTLVLAARLCPPGVEGTLFAALMSIYNASGVASSELGAVLTHALGVTETNFDRLWILVAICSLSYLLPLPLLGLLDQKEEQKLSDLDAPG 514          
BLAST of NO10G01890 vs. NCBI_GenBank
Match: OAE33019.1 (hypothetical protein AXG93_1913s1210 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 105.5 bits (262), Expect = 1.000e-19
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:    1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARGVEQEEQKME 101
            MP LVLAARLCPPG+E TLFA LMS+ NG G +G  LGA+LT  LGVT  NF NL +L+ +CN+++L+ LPFL LLP+E+  +     A      + K E
Sbjct:  501 MPVLVLAARLCPPGVEATLFAALMSISNGGGVVGGVLGAWLTEVLGVTSENFDNLAMLVVLCNVTSLIPLPFLGLLPSEEQLAAAVEKAENARDVDPKAE 600          
BLAST of NO10G01890 vs. NCBI_GenBank
Match: GAX13149.1 (hypothetical protein FisN_17Hh078 [Fistulifera solaris])

HSP 1 Score: 105.5 bits (262), Expect = 1.000e-19
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 0
Query:    1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLP-----AEKSKSGE 86
            +PTLVLAARLCPPG+E  LFATLMS+FNGAG +G E+GA LT  LGVTEN+F NL  LI +C+LS++  LPF+ LL      +EK   GE
Sbjct:  421 LPTLVLAARLCPPGVEAVLFATLMSIFNGAGTVGTEIGALLTKVLGVTENDFTNLAPLIFLCSLSSIFPLPFIGLLDEVGDLSEKEIEGE 510          
BLAST of NO10G01890 vs. NCBI_GenBank
Match: XP_024356686.1 (folate-biopterin transporter 1, chloroplastic-like isoform X1 [Physcomitrella patens] >PNR33870.1 hypothetical protein PHYPA_023686 [Physcomitrella patens])

HSP 1 Score: 105.5 bits (262), Expect = 1.000e-19
Identity = 59/102 (57.84%), Postives = 68/102 (66.67%), Query Frame = 0
Query:    1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARGVEQEEQKMEGY 103
            MP LVLAARLCPPG+E TLFATLMS+ NG G  G  LGA LT  LGVT  NF NL LL+ +CN S+LL LPFL+LLP+E         A  VE+ EQ    +
Sbjct:  523 MPILVLAARLCPPGVEATLFATLMSISNGGGVTGGVLGAGLTQVLGVTSQNFDNLALLLLLCNASSLLPLPFLNLLPSESEL------AATVEKAEQAQRDF 618          
BLAST of NO10G01890 vs. NCBI_GenBank
Match: XP_024356687.1 (folate-biopterin transporter 1, chloroplastic-like isoform X2 [Physcomitrella patens])

HSP 1 Score: 105.5 bits (262), Expect = 1.000e-19
Identity = 59/102 (57.84%), Postives = 68/102 (66.67%), Query Frame = 0
Query:    1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARGVEQEEQKMEGY 103
            MP LVLAARLCPPG+E TLFATLMS+ NG G  G  LGA LT  LGVT  NF NL LL+ +CN S+LL LPFL+LLP+E         A  VE+ EQ    +
Sbjct:  513 MPILVLAARLCPPGVEATLFATLMSISNGGGVTGGVLGAGLTQVLGVTSQNFDNLALLLLLCNASSLLPLPFLNLLPSESEL------AATVEKAEQAQRDF 608          
The following BLAST results are available for this feature:
BLAST of NO10G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25378.11.200e-2887.80folate biopterin transporter [Nannochloropsis gadi... [more]
CBN78031.14.200e-2172.60conserved unknown protein [Ectocarpus siliculosus][more]
XP_006651903.13.600e-2062.22PREDICTED: folate-biopterin transporter 1, chlorop... [more]
CEM01664.14.700e-2066.23unnamed protein product [Vitrella brassicaformis C... [more]
WP_082650664.14.700e-2063.44folate/biopterin family MFS transporter [Mastigoco... [more]
XP_005718642.18.000e-2061.54unnamed protein product [Chondrus crispus] >CDF387... [more]
OAE33019.11.000e-1953.00hypothetical protein AXG93_1913s1210 [Marchantia p... [more]
GAX13149.11.000e-1961.11hypothetical protein FisN_17Hh078 [Fistulifera sol... [more]
XP_024356686.11.000e-1957.84folate-biopterin transporter 1, chloroplastic-like... [more]
XP_024356687.11.000e-1957.84folate-biopterin transporter 1, chloroplastic-like... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL054nonsL054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR012ngnoR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01890.1NO10G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01890.1NO10G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01890 ID=NO10G01890|Name=NO10G01890|organism=Nannochloropsis oceanica|type=gene|length=327bp
ATGCCGACGCTGGTCTTGGCTGCGCGTTTGTGTCCTCCAGGCATTGAGGG
GACACTCTTTGCGACGTTGATGAGCGTGTTTAACGGTGCGGGGGCTTTGG
GCGCAGAGCTGGGGGCATTTTTGACGTCCGCGCTGGGTGTCACCGAGAAT
AATTTTCAGAATTTGGGTCTGCTAATCGCCATTTGCAACCTCAGCACCCT
TTTGTCTCTACCATTTTTGTCCTTGCTCCCAGCGGAAAAAAGCAAGAGTG
GCGAAGGGGGCGATGCACGAGGAGTTGAGCAGGAGGAACAGAAGATGGAG
GGATATGTCCACGAGACAAAAAATTAG
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protein sequence of NO10G01890.1

>NO10G01890.1-protein ID=NO10G01890.1-protein|Name=NO10G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTEN
NFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARGVEQEEQKME
GYVHETKN*
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Synonyms
Publications