NO10G01890, NO10G01890 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G01890 vs. NCBI_GenBank
Match: EWM25378.1 (folate biopterin transporter [Nannochloropsis gaditana]) HSP 1 Score: 135.2 bits (339), Expect = 1.200e-28 Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 0 Query: 1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSK 83 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALG ELGA LTSALGVTE NF+NLGLLI ICNLS+LLSLPFLSLL E K Sbjct: 443 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGTELGALLTSALGVTERNFENLGLLIIICNLSSLLSLPFLSLLGNEDDK 524
BLAST of NO10G01890 vs. NCBI_GenBank
Match: CBN78031.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 110.2 bits (274), Expect = 4.200e-21 Identity = 53/73 (72.60%), Postives = 65/73 (89.04%), Query Frame = 0 Query: 1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFL 74 MPTLVL+ARLCPPG+EGTLFA LMS+FNG +G+ELGA+LT +GVTE +F+NLG+LIAICN+S+LL LPFL Sbjct: 346 MPTLVLSARLCPPGVEGTLFALLMSIFNGGAIVGSELGAYLTRVMGVTEADFRNLGMLIAICNVSSLLPLPFL 418
BLAST of NO10G01890 vs. NCBI_GenBank
Match: XP_006651903.1 (PREDICTED: folate-biopterin transporter 1, chloroplastic-like, partial [Oryza brachyantha]) HSP 1 Score: 107.1 bits (266), Expect = 3.600e-20 Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 0 Query: 1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDAR 91 MP LVLAA+LCPPG+E TLFATLMS+ N G G LGA LT LGVT++NFQNL LLI +CNLS+LL LP L LLP ++S G+ G + Sbjct: 393 MPVLVLAAKLCPPGVEATLFATLMSISNAGGVTGGLLGAGLTQLLGVTKDNFQNLALLIVVCNLSSLLPLPLLGLLP-DESPGGDNGQTK 481
BLAST of NO10G01890 vs. NCBI_GenBank
Match: CEM01664.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 106.7 bits (265), Expect = 4.700e-20 Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 0 Query: 1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLP 78 +PTLVLAA+LCPPG+EGTLFATLMS+FN A +G ELGA LTSA GVT+++F NLG L+ +CN+S+L L F++LLP Sbjct: 415 LPTLVLAAQLCPPGVEGTLFATLMSIFNAAAGVGTELGAVLTSAFGVTDSDFTNLGALVTLCNVSSLFPLLFINLLP 491
BLAST of NO10G01890 vs. NCBI_GenBank
Match: WP_082650664.1 (folate/biopterin family MFS transporter [Mastigocoleus testarum]) HSP 1 Score: 106.7 bits (265), Expect = 4.700e-20 Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 0 Query: 1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARGVE 94 MP L+LAARLCPPGIE TLFA LMSV N AG + ELGA LT LGVTE NF NL LL+ I NLSTLL LPFL+ LPA S++ ++ G+E Sbjct: 374 MPVLILAARLCPPGIEATLFALLMSVSNMAGLVSHELGAGLTHLLGVTETNFDNLWLLVVISNLSTLLPLPFLNWLPAANSQNQNPSNSNGLE 466
BLAST of NO10G01890 vs. NCBI_GenBank
Match: XP_005718642.1 (unnamed protein product [Chondrus crispus] >CDF38737.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 105.9 bits (263), Expect = 8.000e-20 Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 0 Query: 1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARG 92 MPTLVLAARLCPPG+EGTLFA LMS++N +G +ELGA LT ALGVTE NF L +L+AIC+LS LL LP L LL ++ + DA G Sbjct: 424 MPTLVLAARLCPPGVEGTLFAALMSIYNASGVASSELGAVLTHALGVTETNFDRLWILVAICSLSYLLPLPLLGLLDQKEEQKLSDLDAPG 514
BLAST of NO10G01890 vs. NCBI_GenBank
Match: OAE33019.1 (hypothetical protein AXG93_1913s1210 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 105.5 bits (262), Expect = 1.000e-19 Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0 Query: 1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARGVEQEEQKME 101 MP LVLAARLCPPG+E TLFA LMS+ NG G +G LGA+LT LGVT NF NL +L+ +CN+++L+ LPFL LLP+E+ + A + K E Sbjct: 501 MPVLVLAARLCPPGVEATLFAALMSISNGGGVVGGVLGAWLTEVLGVTSENFDNLAMLVVLCNVTSLIPLPFLGLLPSEEQLAAAVEKAENARDVDPKAE 600
BLAST of NO10G01890 vs. NCBI_GenBank
Match: GAX13149.1 (hypothetical protein FisN_17Hh078 [Fistulifera solaris]) HSP 1 Score: 105.5 bits (262), Expect = 1.000e-19 Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 0 Query: 1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLP-----AEKSKSGE 86 +PTLVLAARLCPPG+E LFATLMS+FNGAG +G E+GA LT LGVTEN+F NL LI +C+LS++ LPF+ LL +EK GE Sbjct: 421 LPTLVLAARLCPPGVEAVLFATLMSIFNGAGTVGTEIGALLTKVLGVTENDFTNLAPLIFLCSLSSIFPLPFIGLLDEVGDLSEKEIEGE 510
BLAST of NO10G01890 vs. NCBI_GenBank
Match: XP_024356686.1 (folate-biopterin transporter 1, chloroplastic-like isoform X1 [Physcomitrella patens] >PNR33870.1 hypothetical protein PHYPA_023686 [Physcomitrella patens]) HSP 1 Score: 105.5 bits (262), Expect = 1.000e-19 Identity = 59/102 (57.84%), Postives = 68/102 (66.67%), Query Frame = 0 Query: 1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARGVEQEEQKMEGY 103 MP LVLAARLCPPG+E TLFATLMS+ NG G G LGA LT LGVT NF NL LL+ +CN S+LL LPFL+LLP+E A VE+ EQ + Sbjct: 523 MPILVLAARLCPPGVEATLFATLMSISNGGGVTGGVLGAGLTQVLGVTSQNFDNLALLLLLCNASSLLPLPFLNLLPSESEL------AATVEKAEQAQRDF 618
BLAST of NO10G01890 vs. NCBI_GenBank
Match: XP_024356687.1 (folate-biopterin transporter 1, chloroplastic-like isoform X2 [Physcomitrella patens]) HSP 1 Score: 105.5 bits (262), Expect = 1.000e-19 Identity = 59/102 (57.84%), Postives = 68/102 (66.67%), Query Frame = 0 Query: 1 MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARGVEQEEQKMEGY 103 MP LVLAARLCPPG+E TLFATLMS+ NG G G LGA LT LGVT NF NL LL+ +CN S+LL LPFL+LLP+E A VE+ EQ + Sbjct: 513 MPILVLAARLCPPGVEATLFATLMSISNGGGVTGGVLGAGLTQVLGVTSQNFDNLALLLLLCNASSLLPLPFLNLLPSESEL------AATVEKAEQAQRDF 608 The following BLAST results are available for this feature:
BLAST of NO10G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G01890 ID=NO10G01890|Name=NO10G01890|organism=Nannochloropsis oceanica|type=gene|length=327bpback to top protein sequence of NO10G01890.1 >NO10G01890.1-protein ID=NO10G01890.1-protein|Name=NO10G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bpback to top Synonyms
Publications
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