NO10G01860, NO10G01860 (gene) Nannochloropsis oceanica

Overview
NameNO10G01860
Unique NameNO10G01860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1237
Alignment locationchr10:520730..521966 -

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Properties
Property NameValue
DescriptionPhotosystem II PsbP, oxygen evolving complex
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:520730..521966 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009654photosystem II oxygen evolving complex
GO:0009523photosystem II
GO:0019898extrinsic component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR016123Mog1/PsbP_a/b/a-sand
IPR002683PSII_PsbP
Homology
BLAST of NO10G01860 vs. NCBI_GenBank
Match: EWM25422.1 (Photosystem II PsbP, oxygen evolving complex [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 1.100e-57
Identity = 135/257 (52.53%), Postives = 170/257 (66.15%), Query Frame = 0
Query:    4 PPLQRFWASVATLWALFGLALSPALSNAYVLPSCCLSRQRFLFMNAGHRTGGVKPLSQSSSAWYSRADVFRGGLVLLPGAMLTCLAP--WGVRPVSAAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEGNYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259
            P   R   S+ T+ AL  LA  P  S AY L +  LSR     + A  + G   P         SR+ V  GG+  + G+ L CL      ++PV AA+E      S TF+   +SS  F F YP++W  APKL+QTHQEEVTLKS    GFSAGVAVDPVRIE I+Q+G+P++VG RIV LEGKKEGV KVELL SAQEG++YTFDY VESTRG+NRFLA+AI+  +KL+VFT+Q+P+ AYE+NEA I++ML S Q
Sbjct:    9 PLHSRLCWSLVTMLALGILATFPTHSKAYTLAN--LSR-----LPAHKKCGAFFPRRPLVDRDLSRSQVLSGGISAISGSFLVCLGASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQ 258          
BLAST of NO10G01860 vs. NCBI_GenBank
Match: CBJ25963.1 (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus [Ectocarpus siliculosus])

HSP 1 Score: 105.5 bits (262), Expect = 2.500e-19
Identity = 68/205 (33.17%), Postives = 103/205 (50.24%), Query Frame = 0
Query:   67 YSRADVFRGGLVLLPGAMLT---------CLAPWGVRPVSAAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEG----NYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259
            +SRA   +G   ++ G +L            AP   R     +E+++K        + +   +F   YP  +K   K ++TH+ EV  KS   +G+  GVA+DPVRIE +E  GTP +VG R++ +E  K+G    +LLD++ E     + YT DY VESTRG   F+AK  I    L   T Q     Y   EA + +++ SF+
Sbjct:   70 FSRASALKGMSGVMAGLLLAGVGXXXXXXXXAPAAARAEQGHKEQQDK--EGALEEYASPDGSFALRYPVGFKGFSKPLKTHKVEVNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTLDYFVESTRGFKHFVAKVTIKDNLLYACTAQAKEKDYPQVEAELKRVVESFR 272          
BLAST of NO10G01860 vs. NCBI_GenBank
Match: XP_005539354.1 (similar to oxygen-evolving complex component psbP [Cyanidioschyzon merolae strain 10D] >BAM83318.1 similar to oxygen-evolving complex component psbP [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 89.4 bits (220), Expect = 1.900e-14
Identity = 63/189 (33.33%), Postives = 91/189 (48.15%), Query Frame = 0
Query:   90 PWGVRPVSAAEEEKEKVESSTFIPFVA-----------SSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEGN--------YYTFDYRVESTRGKNR-FLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259
            P+    V AAE  ++ V S+T     A            ++   F YP  W++  K ++TH  EV + S      S GV  D VRI R+E  G+   +G R+++LE KK+GV    L+ +AQ  +        YY  +YRV STRG  R + AK  I   +L V TVQ     +   E +  ++L SFQ
Sbjct:   73 PFSAELVLAAETMQDGVSSATGTTAFAGPRADAVYSAPGARGVQFRYPSRWRIRMKPIKTHAFEVLVVSDTDANTSIGVVSDAVRISRVEDFGSATDIGERVIDLERKKDGVLSAGLVRTAQSVSENDEQPLTYYLCEYRVNSTRGGERHYAAKVTIANGQLYVMTVQCKESQWVMYEPLFKEVLDSFQ 261          
BLAST of NO10G01860 vs. NCBI_GenBank
Match: CEL98426.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 85.1 bits (209), Expect = 3.600e-13
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 0
Query:  141 EEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELL--DSAQEGN--YYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQAPPPAE 265
            EE+  KS   +G++ GVAVDPV+I+ +   GTP  VG RIV++E KK+GV  V+LL  +S + G   +Y  +Y  ++TRG N F+ + I+  Q+L  FT Q     ++     +  ++++F  PP  E
Sbjct:    5 EEINYKSPEIKGYTVGVAVDPVKIDSLAAFGTPDFVGQRIVDVEKKKDGVIDVQLLKAESLESGGQVFYEVEYTSDTTRGFNHFITRVIVVNQRLFAFTAQSKQKDFDKVRDQMKAIVSTFVVPPAQE 132          
BLAST of NO10G01860 vs. NCBI_GenBank
Match: KOO26778.1 (hypothetical protein Ctob_008093 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 82.4 bits (202), Expect = 2.300e-12
Identity = 49/141 (34.75%), Postives = 74/141 (52.48%), Query Frame = 0
Query:  121 FTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEG--------NYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQM 254
            +  +YP  WK A K V+TH  E  L S    G   GV VDPV I+ +E  GT  QV  R++ +E  ++GV  V L  +A +         +YYT +Y  +S+RGK  F  K  I  ++L V  +Q  +  ++ +EA+  Q+
Sbjct:   82 YRLEYPADWKAAGKPVKTHLHEALLSS--PGGLKLGVTVDPVVIDSLEAFGTLDQVTERVLAVETTRDGVNSVILRTNAAQAADAARRTPSYYTIEYATDSSRGKKLFSCKYCIAGRRLYVLQLQAKLDDFDGDEAVRAQV 220          
BLAST of NO10G01860 vs. NCBI_GenBank
Match: GAX25289.1 (hypothetical protein FisN_5Lh372 [Fistulifera solaris])

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11
Identity = 53/179 (29.61%), Postives = 86/179 (48.04%), Query Frame = 0
Query:   83 AMLTCLAPWGVRPVSAAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLD---SAQEGNYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259
            A++T +A + +   SA         S T         ++ F+ P  W    K ++TH +EV  KS     +  G+ VDPVRI+ + + GTPA+V  ++V  E  ++GV  V L +   +A    YY  +Y  +  RG+ RF+ K  +  Q L   T Q     Y   ++ IT+ + SF+
Sbjct:   48 ALITAVAQFPILSQSA------DASSETVFRRQTDRFSYVFEPPTDWAPQNKPLKTHLDEVNFKSPSISKYEYGITVDPVRIKSLHEFGTPAEVAAKVVLSELNRDGVFDVTLAEDAFAADNDAYYQLNYISKGKRGEKRFITKFYVRDQMLFALTAQCLDSDYRKLQSEITKTVDSFR 220          
BLAST of NO10G01860 vs. NCBI_GenBank
Match: XP_005842188.1 (hypothetical protein GUITHDRAFT_98988 [Guillardia theta CCMP2712] >EKX55208.1 hypothetical protein GUITHDRAFT_98988 [Guillardia theta CCMP2712])

HSP 1 Score: 78.6 bits (192), Expect = 3.300e-11
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 0
Query:   98 AAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEGN----YYTFDYRVESTRGKNRFLAKA 225
            A  E++ + E+  F        +F   YP +WK + K V+TH EEV  K     G   G+ VDPV+IE I + GT  +V  R+V +E  K+GV   +L+ ++Q       YY  +Y   S+RG   F++KA
Sbjct:   36 AETEQETRYENEKF--------SFGLSYPSTWKKSTKPVRTHLEEVQFKK--GGGTEIGIVVDPVKIESITEFGTAKEVAKRVVGVERAKDGVTSAKLIAASQTEKSGIPYYMIEYESSSSRGDKHFISKA 156          
BLAST of NO10G01860 vs. NCBI_GenBank
Match: GAX16993.1 (hypothetical protein FisN_5Hh372 [Fistulifera solaris])

HSP 1 Score: 77.8 bits (190), Expect = 5.700e-11
Identity = 54/179 (30.17%), Postives = 83/179 (46.37%), Query Frame = 0
Query:   83 AMLTCLAPWGVRPVSAAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLD---SAQEGNYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259
            A +T +A + V   SA         S T         ++ F+ P  W    K ++TH +EV  KS     +  G+ VDPVRI+ + + GTPA+V  ++V  E  ++GV  V L +   +A    YY  +Y  +  RG+ RF+ K  +  Q L   T Q     Y      IT+ + SF+
Sbjct:   52 AFVTAVATYPVLSQSA------DASSETVFKRQTDRFSYLFEPPTDWAPQNKPLKTHLDEVNFKSPSISKYEYGITVDPVRIKSLREFGTPAEVAAKVVLSELNRDGVFDVTLAEDAFAADNDAYYQLNYTSKGKRGEKRFITKFYVRDQMLFALTAQCLDSDYGKLRNEITKTVDSFR 224          
BLAST of NO10G01860 vs. NCBI_GenBank
Match: XP_013740678.1 (psbP domain-containing protein 2, chloroplastic [Brassica napus])

HSP 1 Score: 75.9 bits (185), Expect = 2.200e-10
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 0
Query:  100 EEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQ---EGNYYTFDYRVESTRGK-NRFLAKAIIYAQKLVVFTV----QVPIPAYESNEAIITQMLASFQAPP 262
            ++ K   ES     +  S   FT   P SW   PK V+     V  +   +R  + GV V PVRI+ +E  GTP  V  +++N E +KE  ++ E++   +   +G  Y F+Y+++STRG   R  + A + ++KL +  V        P   S   ++ Q+L SF A P
Sbjct:   67 DKAKSMAESGDLQRYTDSKDGFTLLVPSSW---PK-VEKAGANVLFEEPEKRSNNIGVVVSPVRIKSLEDFGTPQFVADKLINAEKRKESTKEAEVVSVGERLGQGQVYEFEYKIDSTRGGIKRVFSAAFVSSKKLYILNVVHSDSPENPLASSTRVLLEQVLHSFDALP 232          
BLAST of NO10G01860 vs. NCBI_GenBank
Match: OEU17251.1 (hypothetical protein FRACYDRAFT_151807, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 75.5 bits (184), Expect = 2.800e-10
Identity = 49/145 (33.79%), Postives = 71/145 (48.97%), Query Frame = 0
Query:  120 TFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEGN-----YYTFDYRVESTRGKNRFLAKAIIY-AQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259
            T+    P S K + K ++TH +EV   S   RG+  G+ VDPVRI  I++ GTP +V  R+V  E  ++GV  V LL+   + N      Y   Y     RG+  +  K  I  +Q L V T Q     + + E  I + + SFQ
Sbjct:    5 TYQIAIPSSMKESSKPIKTHLDEVNFMSESTRGYQYGITVDPVRITSIKEFGTPEEVAARVVTAEVNRDGVFDVTLLEDPYQINNGVVDAYVLKYLSVGKRGRKVYTNKIFISPSQLLYVLTAQCKEDDFPAQEKDIKKTIESFQ 149          
The following BLAST results are available for this feature:
BLAST of NO10G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25422.11.100e-5752.53Photosystem II PsbP, oxygen evolving complex [Nann... [more]
CBJ25963.12.500e-1933.17Similar to photosystem II oxygen evolving complex ... [more]
XP_005539354.11.900e-1433.33similar to oxygen-evolving complex component psbP ... [more]
CEL98426.13.600e-1337.50unnamed protein product [Vitrella brassicaformis C... [more]
KOO26778.12.300e-1234.75hypothetical protein Ctob_008093 [Chrysochromulina... [more]
GAX25289.11.100e-1129.61hypothetical protein FisN_5Lh372 [Fistulifera sola... [more]
XP_005842188.13.300e-1135.11hypothetical protein GUITHDRAFT_98988 [Guillardia ... [more]
GAX16993.15.700e-1130.17hypothetical protein FisN_5Hh372 [Fistulifera sola... [more]
XP_013740678.12.200e-1030.59psbP domain-containing protein 2, chloroplastic [B... [more]
OEU17251.12.800e-1033.79hypothetical protein FRACYDRAFT_151807, partial [F... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL054nonsL054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR012ngnoR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001073NSK001073Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01860.1NO10G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586186gene_4027Nannochloropsis oceanica (N. oceanica CCMP1779)gene
psbPgene5082Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01860.1NO10G01860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01860 ID=NO10G01860|Name=NO10G01860|organism=Nannochloropsis oceanica|type=gene|length=1237bp
ACAGGTCTAGGCGCGAGGGACTGGGTGCAAGAGACCAGAAAAAAAGGAGA
AGCAGCTCGCAACAGCTCGACTCTTGACTGTCGGAGCCCGGACCACCTCT
TTACCACAACCACAGCCAAATTGAGGATGCCATTTCCGCCCTTACAACGT
TTCTGGGCCTCGGTAGCCACACTCTGGGCGCTATTTGGGCTCGCACTTTC
ACCGGCCCTTTCAAATGCCTATGTTCTCCCATCATGCTGCCTCAGCCGGC
AGCGGTTTCTATTCATGAATGCGGGGCACAGGACAGGAGGCGTGAAGCCT
TTATCCCAGTCTTCTTCAGCATGGTACAGTCGTGCTGACGTGTTTCGAGG
AGGGCTTGTACTCTTGCCAGGTGCCATGTTAACATGCTTAGCTCCATGGG
GAGTCCGACCTGTCTCAGCCGCCGAGGAGGAAAAGGAAAAGGTGGAATCC
TCCACCTTCATTCCTTTTGTCGCCTCCAGCAAGACCTTCACATTTGACTA
CCCCGACTCTTGGAAGCTGGCCCCCAAACTTGTGCAGACACATCAAGAAG
AGgtaagaggatgtgtggtcataatggccagtcaatgaggtgaccgaggg
taaacgcatttgccccctgccatacgcttccaatagGTGACACTCAAAAG
CACAGTCCAACGAGGCTTCTCCGCGGGAGTAGCGgtaagtaggaagaggg
aagagtggaaataaaatgagaaatgcaaggcgatgggggcaggaaaagaa
tatcccacttggttcccctaactcggttcatagGTGGACCCCGTCCGGAT
CGAGCGGATCGAGCAAACTGGCACGCCTGCCCAAGTCGGTGGTCGCATTG
TGAACCTGGAAGGGAAGAAGGAAGGCGTCCAAAAGGTGGAGTTGCTGGAC
AGTGCGCAAGAGGGCAACTATTACACGTTCGACTACAGGGTGGAGTCGAC
GCGGGGCAAGAATCGCTTCCTGGCCAAGGCCATTATCTATGCCCAGAAGC
TGGTTGTCTTCACCGTGCAGGTCCCCATCCCCGCCTATGAGTCTAATGAG
GCGATAATTACACAAATGCTTGCCTCTTTTCAAGCACCACCACCGGCCGA
GGCTAGGTGACGAATTAACCAGGCTTCAAGGGGAGCAGACATTAAGGGTA
AGGGAGCATGTATTATTTATTAGCCTTTAGAACAGGCTTAAATCAAAAGA
AAGAAATAAGCTACGTCCGAGACGCAATTGATTTTCG
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protein sequence of NO10G01860.1

>NO10G01860.1-protein ID=NO10G01860.1-protein|Name=NO10G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MPFPPLQRFWASVATLWALFGLALSPALSNAYVLPSCCLSRQRFLFMNAG
HRTGGVKPLSQSSSAWYSRADVFRGGLVLLPGAMLTCLAPWGVRPVSAAE
EEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQ
RGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQ
EGNYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAII
TQMLASFQAPPPAEAR*
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Synonyms
Publications