NO10G01860, NO10G01860 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G01860 vs. NCBI_GenBank
Match: EWM25422.1 (Photosystem II PsbP, oxygen evolving complex [Nannochloropsis gaditana]) HSP 1 Score: 233.0 bits (593), Expect = 1.100e-57 Identity = 135/257 (52.53%), Postives = 170/257 (66.15%), Query Frame = 0 Query: 4 PPLQRFWASVATLWALFGLALSPALSNAYVLPSCCLSRQRFLFMNAGHRTGGVKPLSQSSSAWYSRADVFRGGLVLLPGAMLTCLAP--WGVRPVSAAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEGNYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259 P R S+ T+ AL LA P S AY L + LSR + A + G P SR+ V GG+ + G+ L CL ++PV AA+E S TF+ +SS F F YP++W APKL+QTHQEEVTLKS GFSAGVAVDPVRIE I+Q+G+P++VG RIV LEGKKEGV KVELL SAQEG++YTFDY VESTRG+NRFLA+AI+ +KL+VFT+Q+P+ AYE+NEA I++ML S Q Sbjct: 9 PLHSRLCWSLVTMLALGILATFPTHSKAYTLAN--LSR-----LPAHKKCGAFFPRRPLVDRDLSRSQVLSGGISAISGSFLVCLGASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQ 258
BLAST of NO10G01860 vs. NCBI_GenBank
Match: CBJ25963.1 (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus [Ectocarpus siliculosus]) HSP 1 Score: 105.5 bits (262), Expect = 2.500e-19 Identity = 68/205 (33.17%), Postives = 103/205 (50.24%), Query Frame = 0 Query: 67 YSRADVFRGGLVLLPGAMLT---------CLAPWGVRPVSAAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEG----NYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259 +SRA +G ++ G +L AP R +E+++K + + +F YP +K K ++TH+ EV KS +G+ GVA+DPVRIE +E GTP +VG R++ +E K+G +LLD++ E + YT DY VESTRG F+AK I L T Q Y EA + +++ SF+ Sbjct: 70 FSRASALKGMSGVMAGLLLAGVGXXXXXXXXAPAAARAEQGHKEQQDK--EGALEEYASPDGSFALRYPVGFKGFSKPLKTHKVEVNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTLDYFVESTRGFKHFVAKVTIKDNLLYACTAQAKEKDYPQVEAELKRVVESFR 272
BLAST of NO10G01860 vs. NCBI_GenBank
Match: XP_005539354.1 (similar to oxygen-evolving complex component psbP [Cyanidioschyzon merolae strain 10D] >BAM83318.1 similar to oxygen-evolving complex component psbP [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 89.4 bits (220), Expect = 1.900e-14 Identity = 63/189 (33.33%), Postives = 91/189 (48.15%), Query Frame = 0 Query: 90 PWGVRPVSAAEEEKEKVESSTFIPFVA-----------SSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEGN--------YYTFDYRVESTRGKNR-FLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259 P+ V AAE ++ V S+T A ++ F YP W++ K ++TH EV + S S GV D VRI R+E G+ +G R+++LE KK+GV L+ +AQ + YY +YRV STRG R + AK I +L V TVQ + E + ++L SFQ Sbjct: 73 PFSAELVLAAETMQDGVSSATGTTAFAGPRADAVYSAPGARGVQFRYPSRWRIRMKPIKTHAFEVLVVSDTDANTSIGVVSDAVRISRVEDFGSATDIGERVIDLERKKDGVLSAGLVRTAQSVSENDEQPLTYYLCEYRVNSTRGGERHYAAKVTIANGQLYVMTVQCKESQWVMYEPLFKEVLDSFQ 261
BLAST of NO10G01860 vs. NCBI_GenBank
Match: CEL98426.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 85.1 bits (209), Expect = 3.600e-13 Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 0 Query: 141 EEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELL--DSAQEGN--YYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQAPPPAE 265 EE+ KS +G++ GVAVDPV+I+ + GTP VG RIV++E KK+GV V+LL +S + G +Y +Y ++TRG N F+ + I+ Q+L FT Q ++ + ++++F PP E Sbjct: 5 EEINYKSPEIKGYTVGVAVDPVKIDSLAAFGTPDFVGQRIVDVEKKKDGVIDVQLLKAESLESGGQVFYEVEYTSDTTRGFNHFITRVIVVNQRLFAFTAQSKQKDFDKVRDQMKAIVSTFVVPPAQE 132
BLAST of NO10G01860 vs. NCBI_GenBank
Match: KOO26778.1 (hypothetical protein Ctob_008093 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 82.4 bits (202), Expect = 2.300e-12 Identity = 49/141 (34.75%), Postives = 74/141 (52.48%), Query Frame = 0 Query: 121 FTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEG--------NYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQM 254 + +YP WK A K V+TH E L S G GV VDPV I+ +E GT QV R++ +E ++GV V L +A + +YYT +Y +S+RGK F K I ++L V +Q + ++ +EA+ Q+ Sbjct: 82 YRLEYPADWKAAGKPVKTHLHEALLSS--PGGLKLGVTVDPVVIDSLEAFGTLDQVTERVLAVETTRDGVNSVILRTNAAQAADAARRTPSYYTIEYATDSSRGKKLFSCKYCIAGRRLYVLQLQAKLDDFDGDEAVRAQV 220
BLAST of NO10G01860 vs. NCBI_GenBank
Match: GAX25289.1 (hypothetical protein FisN_5Lh372 [Fistulifera solaris]) HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11 Identity = 53/179 (29.61%), Postives = 86/179 (48.04%), Query Frame = 0 Query: 83 AMLTCLAPWGVRPVSAAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLD---SAQEGNYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259 A++T +A + + SA S T ++ F+ P W K ++TH +EV KS + G+ VDPVRI+ + + GTPA+V ++V E ++GV V L + +A YY +Y + RG+ RF+ K + Q L T Q Y ++ IT+ + SF+ Sbjct: 48 ALITAVAQFPILSQSA------DASSETVFRRQTDRFSYVFEPPTDWAPQNKPLKTHLDEVNFKSPSISKYEYGITVDPVRIKSLHEFGTPAEVAAKVVLSELNRDGVFDVTLAEDAFAADNDAYYQLNYISKGKRGEKRFITKFYVRDQMLFALTAQCLDSDYRKLQSEITKTVDSFR 220
BLAST of NO10G01860 vs. NCBI_GenBank
Match: XP_005842188.1 (hypothetical protein GUITHDRAFT_98988 [Guillardia theta CCMP2712] >EKX55208.1 hypothetical protein GUITHDRAFT_98988 [Guillardia theta CCMP2712]) HSP 1 Score: 78.6 bits (192), Expect = 3.300e-11 Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 0 Query: 98 AAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEGN----YYTFDYRVESTRGKNRFLAKA 225 A E++ + E+ F +F YP +WK + K V+TH EEV K G G+ VDPV+IE I + GT +V R+V +E K+GV +L+ ++Q YY +Y S+RG F++KA Sbjct: 36 AETEQETRYENEKF--------SFGLSYPSTWKKSTKPVRTHLEEVQFKK--GGGTEIGIVVDPVKIESITEFGTAKEVAKRVVGVERAKDGVTSAKLIAASQTEKSGIPYYMIEYESSSSRGDKHFISKA 156
BLAST of NO10G01860 vs. NCBI_GenBank
Match: GAX16993.1 (hypothetical protein FisN_5Hh372 [Fistulifera solaris]) HSP 1 Score: 77.8 bits (190), Expect = 5.700e-11 Identity = 54/179 (30.17%), Postives = 83/179 (46.37%), Query Frame = 0 Query: 83 AMLTCLAPWGVRPVSAAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLD---SAQEGNYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259 A +T +A + V SA S T ++ F+ P W K ++TH +EV KS + G+ VDPVRI+ + + GTPA+V ++V E ++GV V L + +A YY +Y + RG+ RF+ K + Q L T Q Y IT+ + SF+ Sbjct: 52 AFVTAVATYPVLSQSA------DASSETVFKRQTDRFSYLFEPPTDWAPQNKPLKTHLDEVNFKSPSISKYEYGITVDPVRIKSLREFGTPAEVAAKVVLSELNRDGVFDVTLAEDAFAADNDAYYQLNYTSKGKRGEKRFITKFYVRDQMLFALTAQCLDSDYGKLRNEITKTVDSFR 224
BLAST of NO10G01860 vs. NCBI_GenBank
Match: XP_013740678.1 (psbP domain-containing protein 2, chloroplastic [Brassica napus]) HSP 1 Score: 75.9 bits (185), Expect = 2.200e-10 Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 0 Query: 100 EEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQ---EGNYYTFDYRVESTRGK-NRFLAKAIIYAQKLVVFTV----QVPIPAYESNEAIITQMLASFQAPP 262 ++ K ES + S FT P SW PK V+ V + +R + GV V PVRI+ +E GTP V +++N E +KE ++ E++ + +G Y F+Y+++STRG R + A + ++KL + V P S ++ Q+L SF A P Sbjct: 67 DKAKSMAESGDLQRYTDSKDGFTLLVPSSW---PK-VEKAGANVLFEEPEKRSNNIGVVVSPVRIKSLEDFGTPQFVADKLINAEKRKESTKEAEVVSVGERLGQGQVYEFEYKIDSTRGGIKRVFSAAFVSSKKLYILNVVHSDSPENPLASSTRVLLEQVLHSFDALP 232
BLAST of NO10G01860 vs. NCBI_GenBank
Match: OEU17251.1 (hypothetical protein FRACYDRAFT_151807, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 75.5 bits (184), Expect = 2.800e-10 Identity = 49/145 (33.79%), Postives = 71/145 (48.97%), Query Frame = 0 Query: 120 TFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEGN-----YYTFDYRVESTRGKNRFLAKAIIY-AQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259 T+ P S K + K ++TH +EV S RG+ G+ VDPVRI I++ GTP +V R+V E ++GV V LL+ + N Y Y RG+ + K I +Q L V T Q + + E I + + SFQ Sbjct: 5 TYQIAIPSSMKESSKPIKTHLDEVNFMSESTRGYQYGITVDPVRITSIKEFGTPEEVAARVVTAEVNRDGVFDVTLLEDPYQINNGVVDAYVLKYLSVGKRGRKVYTNKIFISPSQLLYVLTAQCKEDDFPAQEKDIKKTIESFQ 149 The following BLAST results are available for this feature:
BLAST of NO10G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G01860 ID=NO10G01860|Name=NO10G01860|organism=Nannochloropsis oceanica|type=gene|length=1237bpback to top protein sequence of NO10G01860.1 >NO10G01860.1-protein ID=NO10G01860.1-protein|Name=NO10G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bpback to top Synonyms
Publications
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