NO10G01830, NO10G01830 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO10G01830 vs. NCBI_GenBank
Match: EWM25396.1 (Protein of unknown function DUF2993 [Nannochloropsis gaditana]) HSP 1 Score: 498.0 bits (1281), Expect = 2.500e-137 Identity = 274/371 (73.85%), Postives = 311/371 (83.83%), Query Frame = 0 Query: 7 MLLCLVLRPAVSVAFVPASXXXXSLASVAAVDRLTTSTSTLVQSSTLFQSKRRRLFAASTLPQDRQQRRGRQAEDWEQGKDEQGIQETEKRERKPILSTLVGMLASKLLRKTARRVSGLDIDVGARSNSDVLAGNLPLVKAKFNLIVLENLQISGGGRIEITGLNIRLLALLLARRLSLIRRPFEVWGQYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVQISPLRKLAVYGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVPLGSIRAFDVDIGDNARIESLEIDDIRGVSVTARTLITPAPPFQVTDMGKRAAFMYDMGAFFSSFFGFTHFSDLDLNG 378 M+LCL+L+PA+ AF + ++ + + + + Q R R +STLPQDR +R+GR+ W + + E ERKPILST+V +LASKL+RKTARRV+GLD+DVGARSNSDVLAGNLPLVKAKF+ IVLENLQISGGGR+EITGLNIRLLALLLARRLSLIR+PFEV G+YVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSV+ISP RKLAV+GTAN+AES +GMPFTLLTGVGLAGDGHIVYLD PELVLNP+ LPVKVPLGSIRAFDVDIGDNARIE LEID+ RGV+VTARTLITPAPPFQVTD+GKRAAF+YDMGAFFSSFFGFTHFSDL+L+G Sbjct: 7 MVLCLLLQPALVEAFT-SRLSPLTIPDTVIMTSRQKPPPIMTPTKQISQHTRIRPLLSSTLPQDRPERQGRR---WRRSQIPGEAIEYSMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFGFTHFSDLNLDG 373
BLAST of NO10G01830 vs. NCBI_GenBank
Match: CBJ27995.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 129.0 bits (323), Expect = 3.100e-26 Identity = 82/217 (37.79%), Postives = 126/217 (58.06%), Query Frame = 0 Query: 152 IVLENLQISGGGRIEITGLNIRLLALLLARRLSLIRRPFEVWGQYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVQISPLR-KLAVYGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVPLGSIRAFDVDIGDNARIESLEIDDIRG-VSVTARTLITPAPPFQVTDMGKRAAFMYDMGAFFSSFFG 367 +++E L+ISGG R+ IT L+++++ LL +R ++PFE+ G YVLT +D+S S ++R +V ++N+ LR L SI Q+ R +L + G +A A +PFT T +G+ G GH+VYL E V + +PL + FDVD+G+ ARIES+ I + G V++ AR +I+P PP V + KRAAF +D+ S FG Sbjct: 288 MLVEGLEISGGARMNITNLDLKVMTLLW-KRFGSFKKPFEIEGSYVLTSEDLSTSSMVRRLVTNMMNSTLRKLETLATEPLRKSSITITQVLAKRSRLVIEG--EMAYDSAKVPFTYRTSIGVKGKGHVVYLKDAE-VFWENVGGSLSLPLLPLETFDVDMGEGARIESIRI--VNGQVALKARVVISPFPPLLVASLRKRAAFRFDVAERLSVTFG 498
BLAST of NO10G01830 vs. NCBI_GenBank
Match: CEL94518.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 119.0 bits (297), Expect = 3.200e-23 Identity = 88/272 (32.35%), Postives = 139/272 (51.10%), Query Frame = 0 Query: 104 STLVGMLASKLLRKTARRVSGLDIDVGARSNSDVLAGNLPLVKAKFNLIVLENLQISGGGRIEITGLNIRLLALLLARRLSLIRRPFEVWGQYVLTQQDVSASKLIRDMVQLLVNNVLRTL--------FPSLHLTFFDVSIDSVQISPLRKLAVYGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVPLGSIRAFDVDIGDNARIESLEIDDIRGVSVTARTLITPAPPFQVT--DMGKRAAFMYDMGAFFSSFF 366 S LV +A ++++ R GL I + ++L G PLV+ +F + + L ISGG +EI L IR +LLL RR + +R PFE +G Y LT +D+ S I +++ L N +L + P L L V+I+ V + R L + G A+ + PF + TGVG+ +GH+VYL + L T V V + + ++ +D+GDN I++L + + +++ AR ++ PFQV RAAF D+ S FF Sbjct: 250 SRLVQWIAVNIMQRCCRSAKGLTIQIDLLRRRNLLRGIFPLVRIRFRKLAFQALSISGGAEVEIRELAIRWGSLLL-RRQTFLRGPFETFGTYTLTSEDLEDSPFINRLLRQLANKLLSKMEGTWDGRNIPKLML----VTIEHVTVKDGR-LCITGIAHTV-LNTMTPFRIRTGVGVTSNGHVVYLRDTVVTLGVGTPWEVAVNV-RLESWTLDMGDNVEIDTLVLAKNK-ITLVARCQLSSVEPFQVVPPQSSDRAAFSIDLARLLSKFF 512
BLAST of NO10G01830 vs. NCBI_GenBank
Match: CBN76600.1 (hypothetical protein Esi_0000_0316 [Ectocarpus siliculosus]) HSP 1 Score: 85.9 bits (211), Expect = 3.000e-13 Identity = 84/315 (26.67%), Postives = 130/315 (41.27%), Query Frame = 0 Query: 99 RKPILSTLVGMLASKLLRKTARRVSGLDIDVGARSNSDVLAGNLPLVKAKFNLIVLENLQISGGGRIEITGLNIRLLALLLA--RRLSLIRRPFEVWGQYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFF-----------------------------------------------DVSIDSVQISPLRKLAVYGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVPLGSIRAFDVDIGDNARIESLEIDDIRGV-SVTARTLITPAPPFQVTDMG-KRAAFMYDMGAFFS 363 R+P S + + TA+ + L+++V AR+N D + G + F + E++Q+SGG E+ G+++ L LL RRL +RRP E G+ T DV+ S IR + Q +VN+ LR VS+ V++ KLA+ G + +PF + + DGH++Y K V V +P+ +++F +D+GD ARIE L I RGV S+ R ++T P F V G KR YD+ S Sbjct: 17 RRPFTSHAARWFIKRRILSTAKASAALNVEVEARNNRDAMRGRWESISIDFAKTIFEDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALRPRAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEPSVSVLGVRVHG-NKLAIEGEMTNGGTFLRVPFRYHFSLSASADGHVLYF-KGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRIS--RGVLSLGGRFILTNTPGFTVALPGLKRGDINYDLAESLS 326 The following BLAST results are available for this feature:
BLAST of NO10G01830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G01830 ID=NO10G01830|Name=NO10G01830|organism=Nannochloropsis oceanica|type=gene|length=1346bpback to top protein sequence of NO10G01830.1 >NO10G01830.1-protein ID=NO10G01830.1-protein|Name=NO10G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bpback to top Synonyms
Publications
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