NO10G01820, NO10G01820 (gene) Nannochloropsis oceanica

Overview
NameNO10G01820
Unique NameNO10G01820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4664
Alignment locationchr10:507117..511780 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:507117..511780 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO10G01820 vs. NCBI_GenBank
Match: EWM25374.1 (hypothetical protein Naga_100005g73 [Nannochloropsis gaditana])

HSP 1 Score: 335.5 bits (859), Expect = 1.200e-88
Identity = 162/207 (78.26%), Postives = 179/207 (86.47%), Query Frame = 0 
Query:    1 MSSDKNSQAYPGAATASTIPKNDLQQPLLQPTAPSAPHVAIDIDERRNKQKRQAGISVCGVVALVVVLLLTFLIPRNPSIELSGGEVGLSGVPLYVNASFRFSNRNFYKTTFTNLHFGLYTVSDTGVGVIGDASFEGPIEVKARHHKTIQVGIKTVKGTALKINDYCKSHPSILMFLSNATVEATSEYRNFGTKGVYSPFGAFFMCP 208
            M S   SQAYPG ATAST+PK +LQQPLLQPTAP   HVAIDIDE+R KQK+QA  SVCG +       LTFLIPR+PSIELSGGEVGLSGVPLYVNASFRF+NRNFYKTTF++LHFGLYT+SDTGVGVIGDAS+ GPIEVKARHHK IQVGI T KG+AL+I DYC SHPSILMFLSNATVEATS+YR+FG + VYSP+GAFFMCP
Sbjct:   30 MQSSNKSQAYPGDATASTVPKQELQQPLLQPTAPDVSHVAIDIDEQRRKQKKQAAFSVCGTILXXXXXXLTFLIPRSPSIELSGGEVGLSGVPLYVNASFRFTNRNFYKTTFSDLHFGLYTLSDTGVGVIGDASYAGPIEVKARHHKIIQVGIATAKGSALRIKDYCTSHPSILMFLSNATVEATSKYRDFGVRSVYSPYGAFFMCP 236
The following BLAST results are available for this feature:
BLAST of NO10G01820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25374.11.200e-8878.26hypothetical protein Naga_100005g73 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001052NSK001052Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01820.1NO10G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|422327gene_4033Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g73gene5101Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01820.1NO10G01820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01820 ID=NO10G01820|Name=NO10G01820|organism=Nannochloropsis oceanica|type=gene|length=4664bp
GCTACACTTCCCCTTCATTGGTTCGTCTTCTGTACAAGGATTGTTGGTTA
TTGATTTGTATGCTTATCTTACAGGAGTGATGACTCGTTCGATCGGTCCA
CCGATGTTTTTTTATTTTACCACGACGGCCCAGGTACTGGCGCATTCCCA
TGCGCGATGGAGGAGGTAATCTCCTCCGTCTCTTCTCTCCATTTGCTTTA
TCAGTCAATCAAGCTCTATTAAGTCTCTACACTGTTGTTGCTGTCTATTA
TAATCACACATTCACCCCTTCATAACACATACTATGCCATGTTCGGGTTT
GTACGTGTGCGGACGTCCGCTGACTCAGGATATTGATTATTTCAATTAAT
TTTTACGTCTTACACACACCCGATTTCCTCATTCGATTGTTCAAAATCCC
GTTGTCTGACATGTACTACTTAACTCCTGAATAAAATTTCTCTGTTTCTT
CTACCTTTCAATGGCCTATCACCACAATTCTACTTTTCCGTCCCCTCTTC
CGTCAAACCCCCTCTCCTCATCTCTTGCTTTCTCCATTCAAGTCCAAATC
AGAAAAATGGGTAAACCCAAAGAAACTGCTAAAGAAAGCGCCCATATCGT
ACATGAATGCAGCTCGCTTTCCCATGTCTGTGACTTGAAAGGGTGGGGCA
GGCGTAATAAGTGTGCGAGCCGTGACTGAGACCCCACGAATATCATCAAT
CTCCAGGCTCTCAATCCGCGCGTTGTCGCCAATGTCCACGTCAAAGGCCC
GGATGGATCCCAGCGGAACCTTAACTGGCAAAGTCGTCTGAGGATTCAAT
ACCAGCTCGGGTTTGTCCAGGTAGACGATGTGGCCGTCGCCCGCCAGGCC
CACCCCGGTCAGAAGGGTGAAGGGCATGCCGGCGTCCGACTCGGCGATGT
TGGCGGTGCCATACACGGCCAGCTTTCGCAAAGGGGATATCTGCACCGAG
TCGATAGACACATCGAAGAAGGTAAGGTGCAGGGAGGGAAAGAGGGTGCG
TAGGACGTTGTTGACGAGGAGTTGGACCATGTCGCGGATGAGCTTGGAGG
CGGAGACGTCTTGCTGCGTCAGGACGTACTGCCCCCACACTTCGAAGGGG
CGGCGGATCAATGACAGGCGCCGGGCGAGAAGCAGGGCCAATAGCCGGAT
ATTGAGACCGGTAATCTCAATGCGGCCTCCGCCACTAATTTGTAGGTTCT
CGAGGACGATGAGGTTGAACTTGGCCTGAGAGGAAGGAGAAAGGAAAGGA
AGAGATGAAATTTGGCCAAGAGGAAATATGGATTGACAAAAAGAAAAATG
AAGCACGTGTCTTCATTTATTTTATATTTGTTATCAAAACGCGAGAATTA
CACCATTATCCCTTCATATCCCTTATATCGCCATCATCAGTCACCCGTAC
CAATCCATACACAAATCTTTCGTACCTTGACAAGCGGCAAATTCCCTGCC
AGCACATCCGAGTTGGAGCGGGCGCCCACATCAATATCCAGGCCTGACAC
CCGTCGTGCTGTCTTACGGAGCAGCTTGGAAGCCAGCATTCCTACCAATG
TAGACAAGATCGGCTTTCGTTCGCGTTTCTCCGTCTCCTGAATCCCTTGC
TCGTCCTTCCCCTGCTCCCAGTCCTCCGCCTGCCGACCCCGCCGCTGTTG
GCGATCTTGTGGCAATGTACTGGCAGCGAATAGTCTTCTCCTTTTGGACT
GGAAAAGCGTTGAACTTTGCACCAATGTGGACGTCGACGTAGTTAGCCGG
TCGACGGCTGCAACCGAAGCGAGGGATGAGGCTGGTATTGAGGCGGGCAC
AAACGCCACTGACACGGCTGGCCGCAACACCAGACACAGCAACATGCACA
GCGGTTTCTGCATTCTGTTCCTTGCCAATGGGTAAGTTTGTCGTCTAGCG
TAAGAGAGCTTTTCTACGCCCGCTCGAAGAACAAACGTTGATTATCAGCT
ATCCTTACGTGGCAGCGTGTGAAAACAAACACAAACTAGGGTAGACCTCT
CCTAGATCCGAAGGCAGCCCTGATCTTGCCACTGTCGTGATGCCGCCTGT
CTTGGGTGATGAAGGGGGTGCGTGTTGGGTGAGGAGTGAAAGATGGAGGC
AGCAAATGCGACAGCGATCGAGATGGCCAGAGGAAGGGTGTGGCTCTGTG
GATTCATGTGGACCCGCCGTGTTGCTTCTTACGGTAATGCACTTTAGAGC
CTGAGGGCAGAAGAAAGTCCCATCCCAGTTATTTGTGGGGAGCGCACTGC
TGTACTGATCACTACGCGTGCGAGGGAGAGGATCATGTGATTATCTTTAT
TTTTGTCGCTCCAGTAAAACTTTAGGGGCCCATGCTACTTGTGCTGATAG
CTGCCCGTTCTCCTTCCGCGCATACCTTGTTTACGCACCGCTCGAGGCCC
TGACTCTAAGCATTCTCTATCTGTCCCCTCCGCACCCATAGCATCGCTTG
TCCCTGGCCGACGCCCGAGCCACAGCTTTATACCCAGCTAGAGACTGCCT
CGAGAGCGATTAGCCAAAGGGACCACCATCATTGTGCTTTGAGTACGCCC
ACTTCAGAGTCATGTCCTCCGACAAAAACTCTCAGgtaaattcaagtgtg
tgttcagtgagcagctgatgcggagcgttatggttccgtgtcgggctgtc
cgaacgtgatttttagtcttgctctatttctcctgttgggccaggcgagg
ggctggaggttgaagggcgcgcatgctacgccacgggctccgcgccttga
caggaaagagcttgtcactaatgagtgggagcatgagtgtcattctctta
ctatcggtggcgctcctctttcataaataccctttccactcttctcatat
attctcacgcactaactatcacacctacgtacagGCCTATCCGGGCGCCG
CCACTGCCTCGACGATCCCAAAAAATGATTTGCAGCAACCTTTGTTGCAA
CCAACCGCACCCTCGGCTCCCCATGTGGCCATTGATATTGACGAGCGGCG
TAATAAACAGAAGAGACAGGCGGGAATTTCTGTTTGCGGAGTCGTAGCTC
TGGTGGTGGTGCTCTTACTCACCTTCTTGATTCCTCGCAATCCTTCCATT
GAGTTGTCGGGGGGTGAAGTGGGGCTTTCTGGCGTCCCACTTTACGTCAA
TGCGTCTTTCCGTTTCAGCAATCGCAATTTTTACAAGACCACGTTTACCA
ATCTGCACTTTGGTCTGTATACAGTCTCCGACACGGGCGTGGGCGTGATA
GGCGATGCCTCGTTCGAGGGGCCGATTGAAGTCAAGGCCCGTCACCACAA
AACAATCCAAGTGGGCATCAAGACGGTCAAGGGCACCGCCTTGAAGATAA
ACGACTACTGCAAGTCCCACCCCTCCATCCTCATGTTCTTGTCCAATGCC
ACCGTGGAAGCCACTTCGGAGTATAGGAACTTCGGGACCAAAGGCGTATA
TTCTCCCTTTGGAGCCTTCTTTATGTGTCCGCCTCCCCCTCCCTCCCCCT
CCCTTTTGTTGGCGTAAGGTGGGGCGGAGTAGCAGAAGCAGGCAGAGGGA
GAGGGTGAGACATTGGAGTTGAACGAGGAAATGGAAAGCGAAGATGGCAG
AAAGTAAGCGGAAGGAAGGATGGAATGTGGGTATGGGTGTGGGTATGCGG
GTGCATGTGTGGATGTATGCATGTTAAAGATGAAAGCGAGTATCGGGCAT
CTTGAGATAGCAGATCGATGGAAATTTATTTTTTATGGAATTAGTCTAAG
GAAGGCCTGTGCAGGAAAAAGTTCAACACTCCAACAAATGGGGCGTTTTC
TGAGGGAGTGGAAGGAAAGAAGCAAGGAGGGGATGGAGGCCAAGCTTTTT
CTAAGTCGATAAACGATAGAACAAATTAAAAGAATTACATGTCAACACAA
ATCTACCAAAAAGTTTCGTTTGTCCTTTTTGTTCGTATCACTTAATTTGG
CGCATAAATCTGGCGTAGAAGAGGATAGTCACTGTCTTCAGCATTGCCTC
TTCTTTGGTCTCTTGCTCTTCCCTACAAAGATGCGCCCCTAGTACCCATT
CGGTTTGTCTTCGAAGCCGTGTAACCCGCCTGTGATGTTTCATGGAGAGA
GTCACGATTAGTTGGGCTTGGGTATGTCAGTGTGGGGGTATTCCGCTGCC
CGAAAGAGCACTTGAGAGGATATCAAATGCAAGCCCATTTGCCCTGCTGC
TGCTACACGCAGATGATGCGGATGCTGTATATGTTGCCTCCCCTGTGATC
TCTTTTTTCCCCCTCCTTCTAGCCCTGTTTGGGCCGTCCGAGGACTTTAC
AAGTGAAACCCCTGTCAAAGCCGCTGAACAACTCGGACCAAAAAGGGGAA
GTACAGGCAATATTTTATTGTTGGAAGGTTCCCCTCGCATGTAGTCCTGT
GACGTAAGGTTGCATGCGATAGTTCTAGGATTGTAAATAGCTACGACAGA
AAAGAACTATTTATGTATAATGTATTTATTTATTGTATTTATTATTTATT
TGTTACTAGCGGGTGCGCCCGCCTTGTGGGCAGCCAGGGGTGTGTATTTG
TTGTGAGTCATAGGAAAAGATAGGGGTGGGGTAGGAGGAGGTAAAGGAGG
AGCATGTACGCCAGTTGCACACCTGGGGGAGTGATTCGTGTAATGATGTG
TGGTGTGTGGAGAA
back to top

protein sequence of NO10G01820.1

>NO10G01820.1-protein ID=NO10G01820.1-protein|Name=NO10G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MSSDKNSQAYPGAATASTIPKNDLQQPLLQPTAPSAPHVAIDIDERRNKQ
KRQAGISVCGVVALVVVLLLTFLIPRNPSIELSGGEVGLSGVPLYVNASF
RFSNRNFYKTTFTNLHFGLYTVSDTGVGVIGDASFEGPIEVKARHHKTIQ
VGIKTVKGTALKINDYCKSHPSILMFLSNATVEATSEYRNFGTKGVYSPF
GAFFMCPPPPPSPSLLLA*
back to top
Synonyms
Publications