NO10G01790, NO10G01790 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G01790 vs. NCBI_GenBank
Match: EWM25399.1 (ribosomal rna small subunit methyltransferase nep1 [Nannochloropsis gaditana]) HSP 1 Score: 354.4 bits (908), Expect = 2.700e-94 Identity = 174/196 (88.78%), Postives = 185/196 (94.39%), Query Frame = 0 Query: 1 MAEPTSSRIDEEALRSKQVITVVLDKASLETVKMKSGQYCLLSCDDHQAMMKKGGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNPKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCKCYGFSVQGTLYNPSSLACALPEDKPIVFVLGAMAAGHITVNDHPYV 197 MAEP SS E+LR+K+VITVVLDKASLETVKMKSGQYCLL+CDDHQAMMKK GKNPADYRPDILHQELLALLDSPLNKVGKLKVYI S+SNVLIEVN KCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNP+TR+LPAG KCYGFSVQGTLYNP++LAC LP+DKP+VFVLGAMAAGHITV DHPYV Sbjct: 1 MAEPESSHDVTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMMKKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYV 196
BLAST of NO10G01790 vs. NCBI_GenBank
Match: CBJ32022.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 286.6 bits (732), Expect = 6.900e-74 Identity = 137/217 (63.13%), Postives = 177/217 (81.57%), Query Frame = 0 Query: 11 EEALRSKQVITVVLDKASLETVKMKSGQYCLLSCDDHQAMM-KKGGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNPKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCKCYGFSVQGTLYNPSSLACALPEDKPIVFVLGAMAAGHITVNDHPYVEEMVSVSDFPLSGATAINRLLGAIEDYWGI 227 +E + ++VI V+L +ASLETVK K G + LL+CDDH+ ++ KK GK+P D RPDI+HQELLALLDSPLNK GKL+VYI + NVLIEVNP+ RIPRT+KRF+GLMVQLLHKLK+R+A LLKV+KNP TRHLP G K +G SV+GTLYNP+ A LP+D PIVF +GAMA+GH+T +++P +EEM+++S++PLSGA AI+RL G IE++WGI Sbjct: 22 DERSQGRRVI-VILKRASLETVKTKKGDFQLLNCDDHRRLVTKKSGKDPKDLRPDIVHQELLALLDSPLNKAGKLQVYILTTLNVLIEVNPQIRIPRTFKRFSGLMVQLLHKLKIRAAGNSTMLLKVVKNPPTRHLPPGSKTFGLSVEGTLYNPNHFAATLPDDAPIVFYIGAMASGHLTKDENPEIEEMIAISEYPLSGAAAISRLFGGIENHWGI 237
BLAST of NO10G01790 vs. NCBI_GenBank
Match: EJK73800.1 (hypothetical protein THAOC_04557 [Thalassiosira oceanica]) HSP 1 Score: 273.1 bits (697), Expect = 7.900e-70 Identity = 135/219 (61.64%), Postives = 174/219 (79.45%), Query Frame = 0 Query: 16 SKQVITVVLDKASLETVKMKSGQYCLLSCDDHQAMMKKG-GKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNPKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCKCYGFSVQGTLYNPSSLACAL----PED--KPIVFVLGAMAAGHITVNDHPYVEEMVSVSDFPLSGATAINRLLGAIEDYWGIL 228 SK++I V+LD+A LET+K + G Y LL+CDDH+ + KK K+P ++RPDI HQELLALLDSPLNK G L+VYI ++ NVLIE++P RIPRTYKRFAGLMVQLLHK+K+++++ TL+KVIKNP ++HLP G YG S QG LYNP+ LA AL PED + F++GAMAAGH+TV DHPY+ +M S+S++PLSGATAINR+LGAIE+ WGI+ Sbjct: 65 SKRLI-VLLDQARLETIKNRRGNYELLNCDDHRDLCKKKLKKDPKEFRPDICHQELLALLDSPLNKSGHLQVYIRTSKNVLIELHPSVRIPRTYKRFAGLMVQLLHKMKIKASENGTTLMKVIKNPFSQHLPVGTHVYGMSCQGLLYNPTGLAKALIPVSPEDAEHQVCFIIGAMAAGHVTVEDHPYISKMFSISEYPLSGATAINRILGAIENQWGIV 282
BLAST of NO10G01790 vs. NCBI_GenBank
Match: XP_002293183.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED89644.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 269.2 bits (687), Expect = 1.100e-68 Identity = 129/215 (60.00%), Postives = 170/215 (79.07%), Query Frame = 0 Query: 20 ITVVLDKASLETVKMKSGQYCLLSCDDHQAMMKKG-GKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNPKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCKCYGFSVQGTLYNPSSLACALPEDKP------IVFVLGAMAAGHITVNDHPYVEEMVSVSDFPLSGATAINRLLGAIEDYWGIL 228 + V+LD+A LET+K + G Y LL+CDDH+ + KK K+P ++RPDI HQELLALLDSPLNK G L++YI ++ NVLIE++P RIPRTYKRFAGLMVQLLHK+K+++++ TL+KVIKNP+++HLP G + YG S QGTLY+P LA AL P + FV+GAMAAGH++V DHPY+E+M S+S++PLSGA+AINR+LGAIE WGI+ Sbjct: 4 LIVILDQAKLETIKNRRGNYELLNCDDHRDICKKKLKKDPKEFRPDICHQELLALLDSPLNKSGHLQIYIRTSRNVLIELHPSVRIPRTYKRFAGLMVQLLHKMKIKASENGTTLMKVIKNPMSQHLPVGTRVYGMSCQGTLYSPLGLAKALIPLDPNGNEGQVCFVIGAMAAGHVSVEDHPYIEKMFSISEYPLSGASAINRILGAIEHQWGIV 218
BLAST of NO10G01790 vs. NCBI_GenBank
Match: GAX13636.1 (rRNA small subunit pseudouridine methyltransferase Nep1 [Fistulifera solaris]) HSP 1 Score: 262.7 bits (670), Expect = 1.100e-66 Identity = 126/221 (57.01%), Postives = 172/221 (77.83%), Query Frame = 0 Query: 14 LRSKQVITVVLDKASLETVKMKSGQYCLLSCDDHQAMMKKG-GKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNPKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCKCYGFSVQGTLYNPSSLACAL----PED--KPIVFVLGAMAAGHITVNDHPYVEEMVSVSDFPLSGATAINRLLGAIEDYWGIL 228 LR + I ++LD+A++E++K K Y LL+CDDH+ KK K+P ++RPDILHQE+LALLDSPLNK G +K+YI + +VLIEVNP R+PRTYKRFAGLMVQLLHK+K++S+ TLLKVIKNP ++HLPAG +CYGFS QG L +P +LA L P+D P F++GAM+ GH+T+ DHPY+E+M+S+S++PLSGA A++R++G +E YWGI+ Sbjct: 54 LRKDKPIIILLDQATIESMKNKRNIYELLNCDDHRDYCKKKLRKDPNEFRPDILHQEMLALLDSPLNKAGLVKLYIQTKKHVLIEVNPSLRMPRTYKRFAGLMVQLLHKMKIKSSTESTTLLKVIKNPFSQHLPAGTRCYGFSSQGDLCSPIALAKNLLPPSPDDGAAPTCFIVGAMSTGHVTLEDHPYMEKMLSISEYPLSGAAALSRIMGGVEHYWGIV 274
BLAST of NO10G01790 vs. NCBI_GenBank
Match: GAX23477.1 (rRNA small subunit pseudouridine methyltransferase Nep1 [Fistulifera solaris]) HSP 1 Score: 261.9 bits (668), Expect = 1.800e-66 Identity = 125/221 (56.56%), Postives = 172/221 (77.83%), Query Frame = 0 Query: 14 LRSKQVITVVLDKASLETVKMKSGQYCLLSCDDHQAMMKKG-GKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNPKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCKCYGFSVQGTLYNPSSLACAL----PED--KPIVFVLGAMAAGHITVNDHPYVEEMVSVSDFPLSGATAINRLLGAIEDYWGIL 228 +R + I ++LD+A++E++K K Y LL+CDDH+ KK K+P ++RPDILHQE+LALLDSPLNK G +K+YI + +VLIEVNP R+PRTYKRFAGLMVQLLHK+K++S+ TLLKVIKNP ++HLPAG +CYGFS QG L +P +LA L P+D P F++GAM+ GH+T+ DHPY+E+M+S+S++PLSGA A++R++G +E YWGI+ Sbjct: 55 VRKNKPIIILLDQATIESMKNKRNIYELLNCDDHRDYCKKKLRKDPNEFRPDILHQEMLALLDSPLNKAGLVKLYIQTKKHVLIEVNPSLRMPRTYKRFAGLMVQLLHKMKIKSSTESTTLLKVIKNPFSQHLPAGTRCYGFSSQGDLCSPIALAKNLLPPSPDDGAPPTCFIVGAMSTGHVTLEDHPYMEKMLSISEYPLSGAAALSRIMGGVEHYWGIV 275
BLAST of NO10G01790 vs. NCBI_GenBank
Match: OEU18962.1 (suppressor Mra1, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 260.4 bits (664), Expect = 5.300e-66 Identity = 123/217 (56.68%), Postives = 168/217 (77.42%), Query Frame = 0 Query: 20 ITVVLDKASLETVKMKSGQYCLLSCDDHQAMMKKG-GKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNPKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCKCYGFSVQGTLYNPSSLACAL----PED----KPIVFVLGAMAAGHITVNDHPYVEEMVSVSDFPLSGATAINRLLGAIEDYWGIL 228 + V+LD+A+LETVK + G Y LL+CDDH+ + KK K+P +RPDILHQELLALLDSPLNK G L++YI + VLIEVNP R PRTYKRFAGLMVQLLHK+K+++ + TLL+VIKNP++ HLP G +C+GFS +G LY+P +LA + P+ P FV+GAM++GH+T++DHPY+E+M+S+S +PLSGA A++RL+G IE +WG++ Sbjct: 1 VIVLLDQATLETVKNRKGLYELLNCDDHRDLCKKKLRKDPNTFRPDILHQELLALLDSPLNKAGLLRIYISTTKKVLIEVNPTIRAPRTYKRFAGLMVQLLHKMKIKAGNDSTTLLQVIKNPLSSHLPPGTRCFGFSCEGQLYSPIALAKTVVSIEPDTTGKIPPTCFVVGAMSSGHVTIDDHPYIEKMLSISSYPLSGAAALSRLMGGIEHHWGVV 217
BLAST of NO10G01790 vs. NCBI_GenBank
Match: OQR93204.1 (ribosome biogenesis protein NEP1 [Achlya hypogyna]) HSP 1 Score: 260.0 bits (663), Expect = 6.900e-66 Identity = 132/214 (61.68%), Postives = 163/214 (76.17%), Query Frame = 0 Query: 14 LRSKQVITVVLDKASLETVKMKSGQYCLLSCDDHQAMMKKGGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNPKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCKCYGFSVQGTLYNPSSLACALPEDKPIVFVLGAMAAGHITVNDHPYVEEMVSVSDFPLSGATAINRLLGAIEDYWGIL 228 L +K + V+L+ A+LETVK G + LL+CDDH+ + KK K+P+ RPDILHQEL+ALLDSPLNK G LKVYI SA NV+IEV+P+ R+PRTYKRFAGLMVQLLH LK+RS+DGK T+LKVIKNPI HLP K YG S G L +P A LP + P+VFVLGAMA GHIT PY++EM+SVS++PLSGA A+ RLL + E ++GIL Sbjct: 5 LETKPQVIVILENAALETVKTAKG-FQLLNCDDHRGIHKKHNKDPSASRPDILHQELMALLDSPLNKAGYLKVYIRSAKNVIIEVSPQMRVPRTYKRFAGLMVQLLHTLKIRSSDGKTTMLKVIKNPIDMHLPPNVKKYGCSCTGNLIDPWDFATKLPVE-PVVFVLGAMAHGHITKEMCPYIDEMISVSEYPLSGAQAVARLLNSFERHYGIL 216
BLAST of NO10G01790 vs. NCBI_GenBank
Match: XP_008872232.1 (hypothetical protein H310_08312 [Aphanomyces invadans] >ETV98804.1 hypothetical protein H310_08312 [Aphanomyces invadans]) HSP 1 Score: 258.5 bits (659), Expect = 2.000e-65 Identity = 133/212 (62.74%), Postives = 162/212 (76.42%), Query Frame = 0 Query: 16 SKQVITVVLDKASLETVKMKSGQYCLLSCDDHQAMMKKGGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNPKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCKCYGFSVQGTLYNPSSLACALPEDKPIVFVLGAMAAGHITVNDHPYVEEMVSVSDFPLSGATAINRLLGAIEDYWGIL 228 +K + VVL+ ASLETVK G Y LL+CDDH+ + KK K+P+ RPDILHQEL+ALLDSPLNK G LKV+I SA VLI+V+ + RIPRTYKRFAGLMVQLLH LK+RS+DGK TLLKVI+NP+ H P CK YG SV G L +P A LP++ P+VFVLGAMA GHIT PYV+EM+S+S++P+SGA AI+RLL A E +GIL Sbjct: 7 TKPQVIVVLENASLETVKTTRG-YQLLNCDDHKGIHKKHNKDPSASRPDILHQELMALLDSPLNKAGHLKVFIRSAKGVLIQVSSQMRIPRTYKRFAGLMVQLLHALKIRSSDGKTTLLKVIQNPVDAHFPPNCKKYGCSVTGDLVDPWEFAAELPKE-PVVFVLGAMAHGHITKEMCPYVDEMISLSEYPMSGAQAISRLLNAFERNYGIL 216
BLAST of NO10G01790 vs. NCBI_GenBank
Match: XP_008618967.1 (hypothetical protein SDRG_14604 [Saprolegnia diclina VS20] >EQC27547.1 hypothetical protein SDRG_14604 [Saprolegnia diclina VS20]) HSP 1 Score: 257.3 bits (656), Expect = 4.500e-65 Identity = 132/214 (61.68%), Postives = 161/214 (75.23%), Query Frame = 0 Query: 14 LRSKQVITVVLDKASLETVKMKSGQYCLLSCDDHQAMMKKGGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNPKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCKCYGFSVQGTLYNPSSLACALPEDKPIVFVLGAMAAGHITVNDHPYVEEMVSVSDFPLSGATAINRLLGAIEDYWGIL 228 L +K + V+L+ A+LETVK G + LL+CDDH+ + KK K+P+ RPDILHQEL+ALLDSPLNK G LKVYI SA NVLIEV+ + RIPRTYKRFAGLMVQLLH LK+RS+DGK TLLKVIKNPI HLPA K YG S G L +P LP + P+VFVLGAMA GH++ PYV+EM+SVS++PLSGA A+ RLL E ++G+L Sbjct: 5 LETKPQVIVILENAALETVKTAKG-HQLLNCDDHKGIHKKHNKDPSASRPDILHQELMALLDSPLNKAGYLKVYIRSAKNVLIEVSSQMRIPRTYKRFAGLMVQLLHTLKIRSSDGKTTLLKVIKNPIDAHLPANIKKYGCSCTGNLVDPWEFVSELPRE-PVVFVLGAMAHGHVSKEMCPYVDEMISVSEYPLSGAQAVARLLNGFERHYGVL 216 The following BLAST results are available for this feature:
BLAST of NO10G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G01790 ID=NO10G01790|Name=NO10G01790|organism=Nannochloropsis oceanica|type=gene|length=1496bpback to top protein sequence of NO10G01790.1 >NO10G01790.1-protein ID=NO10G01790.1-protein|Name=NO10G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bpback to top Synonyms
Publications
|