NO10G01780, NO10G01780 (gene) Nannochloropsis oceanica

Overview
NameNO10G01780
Unique NameNO10G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3678
Alignment locationchr10:494162..497839 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:494162..497839 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010406DUF1003
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO10G01780 vs. NCBI_GenBank
Match: EWM25351.1 (Protein of unknown function DUF1003 [Nannochloropsis gaditana])

HSP 1 Score: 959.5 bits (2479), Expect = 8.000e-276
Identity = 559/1011 (55.29%), Postives = 657/1011 (64.99%), Query Frame = 0
Query:    1 MDGMQEEPFVSVRIPTAGQQLQASN---AQALRFRGGRGAA-PTHRPLIDQLLEDKSLHHHAEILRGLKQSLEEEKKDFLHLQEDVFRSFAEHELMEASFDRQFETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMINLLAGDAAWDPYPFILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRHINCKLDALISSAWKRLFESQALSTSILERLLETEQQHIKWRREASLNAHVRVRRNSKGILEELGDDEAPPSPVRRCPSQELIEAVLCPGAMLAVYDDDHGEGESITGVCLQRGVLGKQKQADMEAAAAEEEGRKPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPPAAPALMASELPWLLETEEDAHTLYLMRTMLKAKGVSPQQLQQQQYDEECMVFEHRSSNLGDNFIGVVSHVRLESRDPSLATKGVVCCCGPVSRRGAMATTTTSAIPQRGRPVAASFVSAAVETASLVDTGGGAEPWFPFDLCYDLRFTEGAVLDSILAGDAILTLRNALDLPCMMAEGEIISMVLHPRGCPCSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLE------EKFLKLRSACPQAVFVSQGEVPPRFKPSLSKDREDRISQFWKRPLGRVTISYNPAPIFACITLRAGQMSVPRSVEFLSHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLPTPPYSFSPLSSTSESMVGSPPPAIPAXXXVTTPSLSSSSCDRGPLTRQSSGSMSLQKILAMNRASLTDRWQAPTKQEVSEANSNETRASSGRPQKQLYVIINPSAELLCNALAWGFFQAGEERAEGADDGSKGHRENAGTSTSGSISNSNFTNKEVPLRLGPRWEGVLPHNKWLQLPLIKNAGRYEIDLMVPIAGPAAVFFYSPQGRLRLRGFLRDDG 1002
            MDG Q+EPFV V+I +A QQ  ++N   AQA+RFRGGRGA   +HRPLIDQLLED SL HH EILRGLKQSLEEEKK++L LQEDVF SFAEHE+MEASFDRQFE KQ+ SGR+AD +AEVGGSWRFVGFFAGF+++W +IN+L+G +A+DPYPFILLNLCLSC++ FQAPVIMMSQNRQV RDRGQSDYTARVNLRAEL+TRHIN KLDALI+SAWKRLFESQALSTS+LERL++ EQQ +  R+ A   +H   R  SKG +E+  +++  PSP++R PSQE++EA+L PGA+L VY+   G      G  ++ G    Q++  +    A ++G+ PDT                                 SLAPPAAPAL+A ELPWLLETEED HTLYLMRTML+AK    Q  +QQ+  +ECMVFEHRSS LGDNF+G+VSHVRLESRDPSLA+KGV+C   P             A  Q GR V+  FV+AAVE ASLVDTGGGAE WFPFDLCYDL FT+GAVLDSILAGDAILTLRNALDLPCM AEGEIISMVLHPRGCPCSL                                +       E  LKLRSACPQAV VSQGEVPPRFKPSLSKDREDRISQFWKRPLGRVTISYNPAPIFAC+TLRAGQMSVPRSVEFL+H                                +                                                                  LP    + + LS TS  +  S   A+P     T  +  S S DR  LT QSSG +SLQ+IL+ +RASL +RWQ+  KQE S  + +   ++     KQLY I+NPSAELLCNALAWGF Q  EE  EG++   +GH  +   + +G IS +    KE+PLRL P WEG LPHN+W+QLPL +   RYEIDL+VP+ GPAAVFF+SPQGRLRLRGFLRD+G
Sbjct:    1 MDGAQKEPFVRVKISSAAQQSSSNNPAHAQAIRFRGGRGAGQASHRPLIDQLLEDASLRHHGEILRGLKQSLEEEKKEYLRLQEDVFTSFAEHEVMEASFDRQFEAKQSFSGRVADAVAEVGGSWRFVGFFAGFMMLWVVINILSGPSAFDPYPFILLNLCLSCMSGFQAPVIMMSQNRQVLRDRGQSDYTARVNLRAELVTRHINAKLDALITSAWKRLFESQALSTSLLERLMDMEQQQLDLRKAAHF-SHAGSR--SKGKMEDPTEEDI-PSPLQRRPSQEVVEALLQPGALLEVYNQGEGSEGFERGSVMENGEDEGQEEG-LITKMAVQQGQVPDT-------------GASASPVSPSSLYKTPLVALSLAPPAAPALLALELPWLLETEEDEHTLYLMRTMLRAK--RAQGPEQQRDWDECMVFEHRSSKLGDNFMGIVSHVRLESRDPSLASKGVICRAEP-------------ADLQPGRRVSDRFVTAAVEIASLVDTGGGAEAWFPFDLCYDLHFTDGAVLDSILAGDAILTLRNALDLPCMTAEGEIISMVLHPRGCPCSLLEAEADVQDGMQQQQTSGRNTRVAVAGEPDGGISGRERRAETLLKLRSACPQAVLVSQGEVPPRFKPSLSKDREDRISQFWKRPLGRVTISYNPAPIFACVTLRAGQMSVPRSVEFLTHR-----------------IDNLPATATAALESSAAPTAALSAAGPGSGMLTNTVPKLGASTSIAGIAASDADSGNGKSIKHPLRRANSGGARTMAAFFGLPPGGSTGTNLSRTSLPL-DSSGKALPPPPHPTMTTSQSISGDRLTLTHQSSGHLSLQRILSHSRASLPERWQSGMKQEASGLSES---SNVSHTPKQLYCIVNPSAELLCNALAWGFAQEEEESLEGSE--VRGHLHHESRTVAGRISKN---KKEIPLRLDPLWEGPLPHNQWVQLPLREQGNRYEIDLLVPVVGPAAVFFFSPQGRLRLRGFLRDNG 952          
BLAST of NO10G01780 vs. NCBI_GenBank
Match: ORY30509.1 (DUF1003-domain-containing protein [Rhizoclosmatium globosum])

HSP 1 Score: 182.2 bits (461), Expect = 8.000e-42
Identity = 161/619 (26.01%), Postives = 233/619 (37.64%), Query Frame = 0
Query:   68 LEEEKKDFLHLQEDVFRSFAEHELMEASFDRQFETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMINLLAGD-----AAWDPYPFILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRHINCKLDALISSAWKRLFESQALSTSILERLLETEQQHIKWRREASLNAHVRVRRNSKGILEELGDDEAPPSPVRRCPSQELIEAVLCPGAMLAVYDDDHGEGESITGVCLQRGVLGKQKQADMEAAAAEEEGRKPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAPPAAPALMASELPWLLETEEDAHTLYLMRTMLKAKGVSPQQLQQQQYDEECMVFEHRSSNLGDNFIGVVSHVRLESRDPSLATKGVVCCCGPVSRRGAMATTTTSAIPQRGRPVAASFVSAAVETASLVDTGGGAEPWFPFDLCYDLRFTE-GAVLDSILAGDAILTLRNALDLPCMMAEGEIISMVLHPRGCPCSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLEEKFLKLRSACPQAVFV-SQGEVPPRFKPSLSKDREDRISQFWKRPLGRVTISYNPAPIFACITLRAGQMSVPRSVEF 680
            LE+++K+   LQ D  ++  E+E  E  + +QFE   T   + AD +A  GGSW+F+G    F+  W   N+L G        WDPYPFILLNL LS +AA QAPVIMMSQNRQ   DR Q D+ + + LR+E   RH+N KLD L+S  W+RL E Q   T +L+ L      HI     A + ++   +  S+  ++                +    +    PG    V       GES + +                          P T                                 SL P +A +  A E  W +ET  D H   L+             L       E ++F H  ++ GDNF+G+V+ V++E R  S   + VV                                                         YDL F +  A LD +LAG+  + LRN +D+ CM   G  + + +H +G                                                  QA  V   G++PPR+K +    RED+I+ FWK  L ++  +Y+P    A +TL  GQ      V+F
Sbjct:  132 LEQDQKELSRLQNDAMKNLGEYEQQEQHWQKQFEQGWTFGEKCADNVARFGGSWKFIGVLVAFLCFWAFTNVLLGQPWSTATPWDPYPFILLNLFLSMIAALQAPVIMMSQNRQSQIDRIQGDFVSTIILRSEHQVRHVNAKLDHLLSEQWRRLLEIQQTQTDLLQMLQYRHSTHIHHEDAAKVMSNTGFQATSQTDID----------------ASLFTDPRSTPGNPFGVI-----RGESFSSI--------------------------PGT--------------------------------MSLLPGSAMSRPA-ETHWSVETHPDDHVRMLLAVYFGLDHSHSPSL-------EDLLFAHWHTD-GDNFLGIVNGVKVEVRQASSVVRRVV---------------------------------------------------------YDLTFNDPSASLDDVLAGEGTVELRNDMDVKCMEQVGRYLRIEIHHKG--------------------------------------------------QAPTVYGNGDLPPRYKSTFVNKREDKITDFWKARLTKINFTYSPPHQVAVLTLAEGQFCERMRVDF 555          
BLAST of NO10G01780 vs. NCBI_GenBank
Match: WP_043776022.1 (DUF1003 domain-containing protein [Desulfomicrobium escambiense])

HSP 1 Score: 163.3 bits (412), Expect = 3.900e-36
Identity = 83/169 (49.11%), Postives = 116/169 (68.64%), Query Frame = 0
Query:   62 RGLKQSLEEEKKDFLHLQEDVFRSFAEHELMEASFDRQFETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMINLLAGDAAWDPYPFILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRHINCKLDALISSAWKRLFESQALSTSILERL 231
            R L + LEEEK +   L+EDV RS  + +L+ ++ + ++    T+  RLADR+A+ GGSW+F+  FAG +++W   N      A+DPYPFILLNL LSCLAA QAPVIMMSQNRQ A+DR +S+   +VNL+AEL  +H+N K+D L++  W+RL E Q L   ++E L
Sbjct:   60 RFLAEMLEEEKGELTRLEEDVLRSLRDQDLLSSNINEEYSESLTMGERLADRLADFGGSWKFILIFAGTLVVWICWNAYQAAQAFDPYPFILLNLVLSCLAALQAPVIMMSQNRQEAKDRLRSENDYQVNLKAELEIKHLNEKVDHLLTRQWQRLLEIQDLQVQLIEDL 228          
BLAST of NO10G01780 vs. NCBI_GenBank
Match: WP_027715871.1 (DUF1003 domain-containing protein [Desulfuromonas sp. TF])

HSP 1 Score: 159.5 bits (402), Expect = 5.600e-35
Identity = 84/170 (49.41%), Postives = 114/170 (67.06%), Query Frame = 0
Query:   62 RGLKQSLEEEKKDFLHLQEDVFRSFAEHELMEASFDRQFETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMIN-LLAGDAAWDPYPFILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRHINCKLDALISSAWKRLFESQALSTSILERL 231
            R ++  LE EK +   L+++V  S    E + ++ D QFE K T   RLADR+A++GGSW F+  FAGF+L+W  +N  +     +DPYPFILLNL LSCLAA QAP+IMMSQNRQ ARDR +S+   RVNL+AEL  RH+N K+D L+S  W+RL E Q +   ++  +
Sbjct:   61 RHIQSLLEAEKGELTALEQEVLDSMMRQETLSSNIDAQFERKLTFGERLADRIADIGGSWSFILTFAGFLLLWVAVNSFVLLRRPFDPYPFILLNLILSCLAAIQAPIIMMSQNRQEARDRLRSENDYRVNLKAELEIRHLNEKIDHLLSRQWERLVEIQQVQLELMSEI 230          
BLAST of NO10G01780 vs. NCBI_GenBank
Match: WP_002650159.1 (DUF1003 domain-containing protein [Blastopirellula marina] >EAQ82317.1 hypothetical protein DSM3645_01345 [Blastopirellula marina DSM 3645])

HSP 1 Score: 159.1 bits (401), Expect = 7.300e-35
Identity = 82/168 (48.81%), Postives = 117/168 (69.64%), Query Frame = 0
Query:   64 LKQSLEEEKKDFLHLQEDVFRSFAEHELMEASFDRQFETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMINLLA-GDAAWDPYPFILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRHINCKLDALISSAWKRLFESQALSTSILERL 231
            ++QSLE E+ +   L++ V  S  +HE++  + D +FE K++L  RLADR+A  GGSW F+  F   +++W  +N +A     +DP+PFILLNL LSCLAA QAPVIMMSQNRQ A+DR ++++  RVNL+AEL  RH++ KLD L++  W+RL E Q L T +LE +
Sbjct:   62 VQQSLETERGELSVLEDQVVESLRQHEILAENPDEEFEEKKSLGQRLADRVASFGGSWTFILLFGAVLVVWIALNSIALLTKPFDPFPFILLNLVLSCLAAIQAPVIMMSQNRQEAKDRLRAEHDYRVNLKAELEIRHLHSKLDLLLTHQWQRLLEIQQLQTDLLEEI 229          
BLAST of NO10G01780 vs. NCBI_GenBank
Match: OGP58916.1 (hypothetical protein A2V67_20760 [Deltaproteobacteria bacterium RBG_13_61_14])

HSP 1 Score: 155.6 bits (392), Expect = 8.100e-34
Identity = 84/172 (48.84%), Postives = 115/172 (66.86%), Query Frame = 0
Query:   68 LEEEKKDFLHLQEDVFRSFAEHELMEASFDRQFETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMINLLA-GDAAWDPYPFILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRHINCKLDALISSAWKRLFESQALSTSILERLLETEQQHI 239
            LE EK +   L+E+V  S  E E++  + + +F+ K TL  + ADR+AE GGSW F+G FAG IL+W +IN +A     +DPYP+ILLNL LSCLAA QAPVIMMSQNRQ ARDR  +++   VNL+AEL  R +N KLD L++  W+RL E Q +   ++E  +  ++  I
Sbjct:   59 LETEKGELSALEEEVVSSMKEPEIISKNVNLEFDRKLTLGEQAADRIAEFGGSWGFIGIFAGVILVWIIINSIALAMRPFDPYPYILLNLVLSCLAAMQAPVIMMSQNRQEARDRLGAEHDYAVNLKAELEIRQLNAKLDQLLNHQWQRLLEIQRIQMELMEAHVRKDRSGI 230          
BLAST of NO10G01780 vs. NCBI_GenBank
Match: WP_077022888.1 (DUF1003 domain-containing protein [Fuerstia marisgermanicae] >APZ91079.1 putative membrane protein [Fuerstia marisgermanicae])

HSP 1 Score: 154.8 bits (390), Expect = 1.400e-33
Identity = 79/164 (48.17%), Postives = 110/164 (67.07%), Query Frame = 0
Query:   68 LEEEKKDFLHLQEDVFRSFAEHELMEASFDRQFETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMINLLAG-DAAWDPYPFILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRHINCKLDALISSAWKRLFESQALSTSILERL 231
            L EEK +   L+ DV  S  EHE++  + + + + + T+  RLAD +A  GGSW F+ FF G +++W  +N +A    ++DPYPFILLNL LSCLAA QAPVIMMSQNRQ  +DR +++   RVNL++EL  RH++ KLD L++  W RL E Q + T +LE L
Sbjct:   61 LTEEKGELTSLERDVVESLREHEILSQNLNTEIDDESTVGQRLADHVASFGGSWTFILFFGGVLVVWITVNSIAMLGKSFDPYPFILLNLVLSCLAALQAPVIMMSQNRQEIKDRLRAENDYRVNLKSELEIRHLHSKLDLLLTHQWHRLLEIQQVQTDLLEEL 224          
BLAST of NO10G01780 vs. NCBI_GenBank
Match: WP_088872619.1 (DUF1003 domain-containing protein [Nitrospirillum amazonense] >ASG21972.1 hypothetical protein Y958_11845 [Nitrospirillum amazonense CBAmc])

HSP 1 Score: 154.5 bits (389), Expect = 1.800e-33
Identity = 78/165 (47.27%), Postives = 110/165 (66.67%), Query Frame = 0
Query:   64 LKQSLEEEKKDFLHLQEDVFRSFAEHELMEASFDRQFETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMINLLAGDAAWDPYPFILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRHINCKLDALISSAWKRLFESQALSTSILE 229
            +++ L++EK +   L   V  S A HE +  + +  +  ++TL  R++D +A  GGSW F+  F GF++IW +I+   GD ++DPYPFILLNL LSCLAA QAP+IMMSQ RQ A+DR +S+   RVNL+AEL  RH++ K+D LI   WKRL E Q L   I++
Sbjct:   63 VEELLQQEKGELTELDRQVAESIATHETLAENIEEGYAEERTLGERMSDHLASFGGSWTFILTFGGFLIIWMIISSFQGDKSFDPYPFILLNLILSCLAAIQAPIIMMSQKRQEAKDRLRSENDYRVNLKAELEIRHLHEKIDYLIQRQWKRLTEIQQLQLEIMQ 227          
BLAST of NO10G01780 vs. NCBI_GenBank
Match: WP_040845743.1 (DUF1003 domain-containing protein, partial [Nitrospirillum amazonense])

HSP 1 Score: 154.1 bits (388), Expect = 2.300e-33
Identity = 77/165 (46.67%), Postives = 110/165 (66.67%), Query Frame = 0
Query:   64 LKQSLEEEKKDFLHLQEDVFRSFAEHELMEASFDRQFETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMINLLAGDAAWDPYPFILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRHINCKLDALISSAWKRLFESQALSTSILE 229
            +++ L++EK +   L   V  S A HE +  + +  +  ++TL  R++D +A  GGSW F+  F GF+++W +I+   GD ++DPYPFILLNL LSCLAA QAP+IMMSQ RQ A+DR +S+   RVNL+AEL  RH++ K+D LI   WKRL E Q L   I++
Sbjct:   43 VEELLQQEKGELTELDRQVAESIATHETLAENIEEGYAEERTLGERMSDHLASFGGSWTFILTFGGFLIVWMIISSFQGDKSFDPYPFILLNLILSCLAAIQAPIIMMSQKRQEAKDRLRSENDYRVNLKAELEIRHLHEKIDYLIQRQWKRLTEIQQLQLEIMQ 207          
BLAST of NO10G01780 vs. NCBI_GenBank
Match: PIS01040.1 (hypothetical protein COT84_04355 [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9])

HSP 1 Score: 153.7 bits (387), Expect = 3.100e-33
Identity = 84/181 (46.41%), Postives = 114/181 (62.98%), Query Frame = 0
Query:   64 LKQSLEEEKKDFLHLQEDVFRSFAEHELMEASFDRQFETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMINLLAGDA-AWDPYPFILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRHINCKLDALISSAWKRLFESQALSTSILERLLETEQQHIKWRRE 244
            ++  L E+K +   L+ +V +SF EHE++    +++FE   T   RLAD++A+ GGSW+F+  F   IL W  IN ++     +DPYP+ILLNL LSCLAA QAP+IMMSQNRQ ARD+ QSDY    NL+AEL  R ++ KLD  +   W RL E Q +   + E LL  EQ H K + E
Sbjct:   41 IQDLLIEDKGELSQLENEVLQSFEEHEILAEDMNKKFEKNLTFGERLADKIAKFGGSWKFISIFISIILSWMTINTVSAFIHPFDPYPYILLNLFLSCLAAIQAPIIMMSQNRQAARDKLQSDYEYTTNLKAELEIRQLHSKLDQFMKKHWYRLLEIQQIQIDLAEDLL--EQNHKKTKDE 219          
The following BLAST results are available for this feature:
BLAST of NO10G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25351.18.000e-27655.29Protein of unknown function DUF1003 [Nannochlorops... [more]
ORY30509.18.000e-4226.01DUF1003-domain-containing protein [Rhizoclosmatium... [more]
WP_043776022.13.900e-3649.11DUF1003 domain-containing protein [Desulfomicrobiu... [more]
WP_027715871.15.600e-3549.41DUF1003 domain-containing protein [Desulfuromonas ... [more]
WP_002650159.17.300e-3548.81DUF1003 domain-containing protein [Blastopirellula... [more]
OGP58916.18.100e-3448.84hypothetical protein A2V67_20760 [Deltaproteobacte... [more]
WP_077022888.11.400e-3348.17DUF1003 domain-containing protein [Fuerstia marisg... [more]
WP_088872619.11.800e-3347.27DUF1003 domain-containing protein [Nitrospirillum ... [more]
WP_040845743.12.300e-3346.67DUF1003 domain-containing protein, partial [Nitros... [more]
PIS01040.13.100e-3346.41hypothetical protein COT84_04355 [Chlamydiae bacte... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001049NSK001049Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01780.1NO10G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|422072gene_4036Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g76gene5104Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01780.1NO10G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01780 ID=NO10G01780|Name=NO10G01780|organism=Nannochloropsis oceanica|type=gene|length=3678bp
TCCTTTTTCTCCTCCTCCTCCTCCTCATCCTCTCTTCCTTTTCCTCCAAC
GCCTCCTCCTTCTGCCTATCCTCCACCACCAACTCCCTCTCCTCCTCCTT
TCCCTCTTCCTCAACCTCTTCCTCCTCAGTTAAAACATATGCTGCGGCAG
AAAAAATGAGGGATATGTCGTCGTCGTCGTCGTCGTAATCGATGCTGCTG
TTTGCAGCGATACGACAACCTCCCCACCCTCGCTCTCGACCACTATATTT
GAATCTTCGCGAGTCGCGGTGATTCTGGGATATAGACAAATGCCATCTGA
ATCCGCGGGCCTCACTTGTACAACCTTTCCACGTGCACAAACAGGAGTCG
AGGACCATGGACGGGATGCAGGAGGAGCCCTTTGTTAGTGTTCGTATTCC
TACGGCAGGCCAACAACTACAAGCCAGCAATGCCCAAGCGCTGCGTTTCA
GAGGCGGGCGAGGGGCCGCGCCCACCCACAGGCCCTTGATTGACCAGTTG
TTGGAAGACAAGAGCTTGCACCACCACGCAGAAATATTGCGGGGGCTGAA
GCAGTCGCTCGAGGAGGAAAAAAAGGATTTCCTCCACCTACAAGAAGATG
TATTTCGCAGCTTTGCGGAGCACGAGCTAATGGAAGCGTCGTTTGACCGT
CAGTTCGAGACTAAGCAGACTCTGTCAGGCAGGCTCGCGGATCGAATGGC
CGAGGTGGGAGGATCCTGGCGGTTCGTGGGTTTTTTCGCTGGCTTTATAC
TTATCTGGTGCATGATCAACCTGCTTGCGGGAGATGCCGCGTGGGACCCG
TACCCTTTTATCCTGCTGAACCTGTGTCTCTCGTGCTTGGCCGCATTCCA
AGCACCCGTCATTATGATGAGCCAAAACCGGCAAGTGGCGAGGGATAGGG
GACAGAGCGATTACACGGCAAGAGTTAACCTGAGAGCTGAGCTCATTACA
AGGCACATCAACTGCAAGCTCGATGCTCTCATTTCGAGTGCGTGGAAACG
CCTCTTTGAAAGCCAAGCCCTCTCCACCTCCATCCTAGAGCGTCTCCTTG
AGACCGAACAACAACACATAAAATGGCGAAGAGAAGCGAGCCTCAACGCG
CATGTACGGGTGAGGAGAAACAGCAAGGGGATCTTGGAGGAGCTGGGGGA
CGACGAAGCCCCTCCTTCACCCGTGCGCCGCTGCCCGTCGCAAGAACTGA
TTGAGGCAGTGCTCTGCCCTGGAGCCATGCTCGCGGTGTACGATGATGAC
CATGGAGAAGGAGAGAGCATTACAGGCGTGTGTCTTCAAAGAGGAGTTCT
GGGAAAGCAGAAGCAAGCGGACATGGAGGCCGCCGCGGCCGAAGAAGAGG
GCCGAAAGCCCGACACTGCGGCCACCACTTCCTCCTCTACCTCCTCCACC
TCCTCCACCTCCATCACCTCGCTTGTAGCCACCAGCAGTTTGTACAGCAC
GCCCCTGGCGGCTCTCAGTCTGGCCCCGCCTGCAGCACCTGCGTTGATGG
CAAGCGAGCTTCCGTGGCTTTTGGAGACGGAGGAGGATGCGCATACCCTC
TATCTCATGAGGACCATGCTGAAAGCAAAGGGCGTCTCCCCACAGCAGCT
GCAGCAACAGCAATACGATGAAGAGTGCATGGTCTTCGAGCATCGCAGCT
CCAATTTGGGCGATAACTTCATCGGCGTCGTTTCCCACGTCCGTCTCGAG
TCACGGGACCCCTCATTGGCGACCAAGGGGGTGGTATGCTGCTGCGGCCC
CGTCAGTAGACGAGGAGCGATGGCAACAACGACGACAAGCGCTATCCCGC
AGCGAGGCCGTCCAGTGGCGGCGAGCTTTGTGAGCGCCGCAGTGGAGACT
GCTTCTTTGGTGGACACGGGAGGAGGAGCCGAGCCATGGTTTCCGTTTGA
TTTGTGCTACGACCTGCGGTTCACGGAGGGGGCGGTTTTAGACTCGATCT
TGGCAGGCGATGCCATCTTGACACTCCGAAATGCCCTGGATCTGCCCTGC
ATGATGGCCGAGGGGGAGATCATTTCGATGGTCCTCCATCCCCGTGGTTG
CCCCTGCTCACTTCTTGAAGCCGAGGCCCAGCACCAGCACCTGCACCTGC
ACCGGCAGCAGCAACATCAGCCTGGAGGAGCAGGAAATGGTGGTAGTGGA
GGGGGGGTACTAGAGGAAAAGTTCCTCAAGCTCCGCAGCGCCTGCCCTCA
GGCCGTTTTTGTCAGCCAAGGCGAAGTTCCTCCGCGCTTCAAACCCAGCC
TGAGCAAGGACCGAGAGGATCGCATCTCCCAGTTTTGGAAGCGTCCGCTG
GGCCGCGTGACCATTTCCTACAATCCCGCCCCAATCTTCGCTTGTATCAC
TCTCCGAGCCGGCCAAATGTCGGTGCCACGCTCCGTGGAGTTTCTGTCGC
ATCACCACGTCCACGTCGCTAATGCCTCTACCGCCCCCTCCACTGCTGCT
GCTGCTGCTGCTGCTACTGCTACTGCTTCCGCGACCGCCTCAATAGCAAC
AGGAGGCATGATAACGACTGCAGCAGGAGGCGCATCTGCAACAACGTCAG
GGGGGGCTGCGAGCGACGGTGGGGGCTTCATTGCACCTCCCCTCAAGAAA
GCGAGCAGTGCAAGTGCCCGTACGATGGCATCCTTGCTGGGTCTTCCCCC
ACCAGGAGGCAATGGTAGCAATACAAACAATAGCAACAGCGGACTTTCCC
TTCCCACCCCACCCTATTCCTTTTCCCCTTTGTCTTCTACGTCGGAATCG
ATGGTGGGCTCCCCCCCGCCCGCCATACCGGCACCACCCGCAGTCACGAC
TCCCTCTCTGTCATCCTCTTCGTGTGACCGAGGCCCTCTTACCCGTCAAT
CAAGCGGGAGCATGTCCCTCCAAAAAATTTTGGCTATGAATCGCGCCTCC
CTGACCGATCGTTGGCAGGCACCGACGAAGCAAGAGGTAAGCGAGGCAAA
TTCTAATGAGACCCGCGCCTCCAGTGGTCGACCTCAGAAGCAGTTGTACG
TTATCATCAACCCCTCGGCGGAGCTCTTATGCAATGCTTTGGCTTGGGGC
TTTTTCCAAGCAGGCGAAGAGAGAGCCGAGGGTGCAGACGACGGAAGCAA
GGGTCATCGAGAGAATGCGGGCACCTCCACCAGTGGCAGCATCAGCAATA
GCAATTTTACGAACAAAGAAGTACCTCTCCGTCTTGGGCCTCGGTGGGAA
GGCGTCCTCCCTCATAACAAATGGCTACAGCTTCCTCTCATAAAAAATGC
GGGTCGGTACGAGATTGATTTGATGGTGCCGATTGCTGGACCGGCTGCTG
TCTTTTTCTATTCGCCGCAAGGACGGTTGCGCTTGCGTGGATTCTTGCGC
GATGATGGGAGTGCATAAGATGGGCAAGGCAGGAGGAAGATGAGAGAGGG
CGGAGAGCTTTGGACAAGTGTAGGAAAGGGTTTAGTGTAGGAGCTCATGC
CTCGTAAATCACGAGGGGATGGCAACGGGATAAATGGCAATCATTTTCAG
AGACGTAGAAATGTGTATCAGAAAGAGAAGACACGTGTATATATATTGAT
ATCGTATCAATATATATATCAATATATCTCGAATGTATATTGCGGTAGTA
TGAGGTAAATGGCATGAGTGGGGAACTGTGTAGAGTAGTACTTGTTAGCA
TCGACCGTTGAGGTGAACAAAATGGTCA
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protein sequence of NO10G01780.1

>NO10G01780.1-protein ID=NO10G01780.1-protein|Name=NO10G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1004bp
MDGMQEEPFVSVRIPTAGQQLQASNAQALRFRGGRGAAPTHRPLIDQLLE
DKSLHHHAEILRGLKQSLEEEKKDFLHLQEDVFRSFAEHELMEASFDRQF
ETKQTLSGRLADRMAEVGGSWRFVGFFAGFILIWCMINLLAGDAAWDPYP
FILLNLCLSCLAAFQAPVIMMSQNRQVARDRGQSDYTARVNLRAELITRH
INCKLDALISSAWKRLFESQALSTSILERLLETEQQHIKWRREASLNAHV
RVRRNSKGILEELGDDEAPPSPVRRCPSQELIEAVLCPGAMLAVYDDDHG
EGESITGVCLQRGVLGKQKQADMEAAAAEEEGRKPDTAATTSSSTSSTSS
TSITSLVATSSLYSTPLAALSLAPPAAPALMASELPWLLETEEDAHTLYL
MRTMLKAKGVSPQQLQQQQYDEECMVFEHRSSNLGDNFIGVVSHVRLESR
DPSLATKGVVCCCGPVSRRGAMATTTTSAIPQRGRPVAASFVSAAVETAS
LVDTGGGAEPWFPFDLCYDLRFTEGAVLDSILAGDAILTLRNALDLPCMM
AEGEIISMVLHPRGCPCSLLEAEAQHQHLHLHRQQQHQPGGAGNGGSGGG
VLEEKFLKLRSACPQAVFVSQGEVPPRFKPSLSKDREDRISQFWKRPLGR
VTISYNPAPIFACITLRAGQMSVPRSVEFLSHHHVHVANASTAPSTAAAA
AAATATASATASIATGGMITTAAGGASATTSGGAASDGGGFIAPPLKKAS
SASARTMASLLGLPPPGGNGSNTNNSNSGLSLPTPPYSFSPLSSTSESMV
GSPPPAIPAPPAVTTPSLSSSSCDRGPLTRQSSGSMSLQKILAMNRASLT
DRWQAPTKQEVSEANSNETRASSGRPQKQLYVIINPSAELLCNALAWGFF
QAGEERAEGADDGSKGHRENAGTSTSGSISNSNFTNKEVPLRLGPRWEGV
LPHNKWLQLPLIKNAGRYEIDLMVPIAGPAAVFFYSPQGRLRLRGFLRDD
GSA*
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Synonyms
Publications