NO10G01680, NO10G01680 (gene) Nannochloropsis oceanica

Overview
NameNO10G01680
Unique NameNO10G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length468
Alignment locationchr10:472837..473304 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:472837..473304 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012875DUF1674
Homology
BLAST of NO10G01680 vs. NCBI_GenBank
Match: EWM25379.1 (Protein of unknown function DUF1674 [Nannochloropsis gaditana])

HSP 1 Score: 112.8 bits (281), Expect = 9.300e-22
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 0
Query:   63 DNVAAVKVTRATAVDKEEEDGKVVVADKHMITTIKKPACGPDPVEEHEDEMEEMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGRCSDFS 156
            D   A     + A  KE+E G ++       + +KK  CG   VEE EDEMEEMFVMGPSG +EWGGPTRGG+HKEPTR+GDWERKGRC+DFS
Sbjct:   76 DEAQATSPGPSNARVKEDEGGVIIEVGTTSQSAVKKDTCG--EVEEAEDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDFS 166          
BLAST of NO10G01680 vs. NCBI_GenBank
Match: CBJ29905.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.1 bits (183), Expect = 2.200e-10
Identity = 43/87 (49.43%), Postives = 51/87 (58.62%), Query Frame = 0
Query:   68 VKVTRATAVDKEEEDGKVVVADKHMITTIKKPACGPDPVEEHEDEMEEMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGRCSDF 155
            V  T+A A D+  + G V           K   CG    +  ++EMEEM   GP+G  EWGGPTRGG   EPTR+GDWERKGRCSDF
Sbjct:   57 VTETKAGAGDRPGQQGPV-----------KLDLCGEIEDDVGDEEMEEMLQEGPAG-KEWGGPTRGGVLGEPTRFGDWERKGRCSDF 131          
BLAST of NO10G01680 vs. NCBI_GenBank
Match: XP_008870640.1 (hypothetical protein H310_07118 [Aphanomyces invadans] >ETW00505.1 hypothetical protein H310_07118 [Aphanomyces invadans])

HSP 1 Score: 73.6 bits (179), Expect = 6.300e-10
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 0
Query:  113 MEEMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGRCSDF 155
            ME+M ++GP+GT EWGGP RGG++KEPTR+GDWE+KGRC DF
Sbjct:   54 MEDMVMIGPAGT-EWGGPQRGGKYKEPTRFGDWEKKGRCCDF 94          
BLAST of NO10G01680 vs. NCBI_GenBank
Match: CCI49539.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 71.2 bits (173), Expect = 3.100e-9
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   74 TAVDKEEEDGKVVVADKHMITTIKKPACGPDPVE------EHEDEMEEMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGRCSDF 155
            +AV K  ++  ++   K   + I KP    + ++      E ED+ E++   GPSG  E+GGPT+GG+ KEPTRYGDWER GRC+DF
Sbjct:   21 SAVKKYSKNSSLLQYQKRYWSDITKPKVDSNTLQELDLDYESEDDEEDVLDSGPSGP-EYGGPTKGGKLKEPTRYGDWERNGRCTDF 106          
BLAST of NO10G01680 vs. NCBI_GenBank
Match: GAX20160.1 (hypothetical protein FisN_17Lh111 [Fistulifera solaris])

HSP 1 Score: 71.2 bits (173), Expect = 3.100e-9
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   95 TIKKPACGPDPVEEHEDEM--EEMFVMGPSG----TMEWGGPTRGGQHKEPTRYGDWERKGRCSDF 155
            T+K  ACG D  E+ +DEM  E+MFV         TMEWGGP RGG+  EPTRYGDWERKGR +DF
Sbjct:   59 TLKIEACG-DIKEDDDDEMEKEKMFVEPHESFEFRTMEWGGPRRGGRLPEPTRYGDWERKGRATDF 123          
BLAST of NO10G01680 vs. NCBI_GenBank
Match: OQR99564.1 (hypothetical protein ACHHYP_05758 [Achlya hypogyna])

HSP 1 Score: 70.1 bits (170), Expect = 6.900e-9
Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query:  115 EMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGRCSDF 155
            +M  +GP+GT EWGGP+RGG++KEPTR+GDWE+KGRC DF
Sbjct:   57 DMVTIGPAGT-EWGGPSRGGKYKEPTRFGDWEKKGRCMDF 95          
BLAST of NO10G01680 vs. NCBI_GenBank
Match: CCA26607.1 (AlNc14C394G11311 [Albugo laibachii Nc14])

HSP 1 Score: 69.7 bits (169), Expect = 9.000e-9
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0
Query:  108 EHEDEMEEMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGRCSDF 155
            E ED+ EE+   GPSG  E+GGPT+GG+  EPTRYGDWER GRC+DF
Sbjct:   62 ESEDDEEEILTSGPSGP-EYGGPTKGGKLPEPTRYGDWERNGRCTDF 107          
BLAST of NO10G01680 vs. NCBI_GenBank
Match: XP_009826477.1 (hypothetical protein H257_03878 [Aphanomyces astaci] >ETV84785.1 hypothetical protein H257_03878 [Aphanomyces astaci])

HSP 1 Score: 69.3 bits (168), Expect = 1.200e-8
Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query:  115 EMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGRCSDF 155
            +M V+GP+G +EWGGP RGG++KEPTR+GDWE+KGRC DF
Sbjct:   52 DMVVIGPAG-VEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90          
BLAST of NO10G01680 vs. NCBI_GenBank
Match: OWZ11198.1 (hypothetical protein PHMEG_00015815 [Phytophthora megakarya])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query:  115 EMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGRCSDF 155
            +M  +GPSG +E+GGPTRGG+ KEPTR+GDWERKGRCSDF
Sbjct:   58 DMVAIGPSG-VEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96          
BLAST of NO10G01680 vs. NCBI_GenBank
Match: XP_002903726.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY54781.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-8
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0
Query:   91 HMITTIKKPACGPDPVEEHE-DEMEEMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGRCSDF 155
            H+  T   P    + +++ + ++ EE   +GP G +E+GGPTRGG+ KEPTR+GDWERKGRCSDF
Sbjct:   34 HITNTPAAPRSDGENLDDLDGNDAEETVAIGPLG-VEYGGPTRGGKLKEPTRFGDWERKGRCSDF 97          
The following BLAST results are available for this feature:
BLAST of NO10G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25379.19.300e-2259.14Protein of unknown function DUF1674 [Nannochlorops... [more]
CBJ29905.12.200e-1049.43conserved unknown protein [Ectocarpus siliculosus][more]
XP_008870640.16.300e-1071.43hypothetical protein H310_07118 [Aphanomyces invad... [more]
CCI49539.13.100e-943.68unnamed protein product [Albugo candida][more]
GAX20160.13.100e-959.09hypothetical protein FisN_17Lh111 [Fistulifera sol... [more]
OQR99564.16.900e-970.00hypothetical protein ACHHYP_05758 [Achlya hypogyna... [more]
CCA26607.19.000e-965.96AlNc14C394G11311 [Albugo laibachii Nc14][more]
XP_009826477.11.200e-870.00hypothetical protein H257_03878 [Aphanomyces astac... [more]
OWZ11198.11.500e-875.00hypothetical protein PHMEG_00015815 [Phytophthora ... [more]
XP_002903726.12.000e-850.77conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001039NSK001039Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01680.1NO10G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586310gene_4048Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g86gene5113Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01680.1NO10G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01680 ID=NO10G01680|Name=NO10G01680|organism=Nannochloropsis oceanica|type=gene|length=468bp
ATGACTGTGCCCGGAAACCTTGTCCGTAGATTCCTGGCTATCTCAGGAGC
AGCATCATTGTCTGTCGCCCCGGCATGCGACACGTTATTGCTGCGGCATT
CTGTGCGCCACGCAAAGCGCAACGCACACCCGCAGCCAATCGTATCAGTG
TCACGGGGAAGACGTTTGACCACCGCTCCTTTTCCAGATAATGTCGCTGC
TGTCAAGGTTACCCGCGCCACCGCTGTCGACAAAGAGGAGGAAGACGGCA
AAGTAGTGGTGGCAGATAAGCACATGATAACAACCATCAAGAAGCCGGCG
TGCGGCCCGGACCCTGTGGAAGAGCACGAAGACGAGATGGAGGAGATGTT
TGTGATGGGCCCATCGGGTACAATGGAGTGGGGGGGGCCCACACGGGGAG
GGCAGCACAAGGAGCCGACTCGATATGGAGACTGGGAGCGCAAGGGCCGG
TGCTCTGACTTCAGCTAG
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protein sequence of NO10G01680.1

>NO10G01680.1-protein ID=NO10G01680.1-protein|Name=NO10G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MTVPGNLVRRFLAISGAASLSVAPACDTLLLRHSVRHAKRNAHPQPIVSV
SRGRRLTTAPFPDNVAAVKVTRATAVDKEEEDGKVVVADKHMITTIKKPA
CGPDPVEEHEDEMEEMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGR
CSDFS*
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Synonyms
Publications