NO10G01650, NO10G01650 (gene) Nannochloropsis oceanica

Overview
NameNO10G01650
Unique NameNO10G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1814
Alignment locationchr10:467328..469141 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:467328..469141 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO10G01650 vs. NCBI_GenBank
Match: EWM25436.1 (hypothetical protein Naga_100005g87 [Nannochloropsis gaditana])

HSP 1 Score: 320.9 bits (821), Expect = 4.600e-84
Identity = 168/259 (64.86%), Postives = 187/259 (72.20%), Query Frame = 0
Query:   32 VMVNANDKTRPFTRLQST-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFNQPLRPNEKVKFLQKMAKGNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQIMGRRLNDEQTAEGFTRGVQNILTFAKEAFVKIKDPQQTVNTIAKMAADPNPAIQDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDKLLAMPEIMRFIDRDETLSKLFRSDIKETF 280
            ++V ANDK RPFTRLQST                                              GF+QPLRPN+KV FLQK+AKGNVDP+ELFTRGV SK FQ +LKNVEIQHRIL+EMPLLAAFDGFRQI GRRL+  +T EGF  GVQN++ FAK AF+K+KDPQQT  TIAKMAADPNPAIQ LFRRAQ GD  AVEELQDVFNDLHFPGV++RVLREV  NHTF+KLL+MPEIMRFIDR+E  S  FRSDIKETF
Sbjct:   48 MIVKANDKARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFRSDIKETF 306          
BLAST of NO10G01650 vs. NCBI_GenBank
Match: EWM22205.1 (hypothetical protein Naga_100291g6 [Nannochloropsis gaditana])

HSP 1 Score: 160.2 bits (404), Expect = 1.000e-35
Identity = 115/255 (45.10%), Postives = 166/255 (65.10%), Query Frame = 0
Query:   20 VLVMLIVLVGAAVMVNANDK-TRPFTRLQSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFNQPLRPNEKVKFLQKMAKGNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQIM-GRRLNDEQTAEGFTRGVQNILTFAKEAFV-KIKDPQQTVNTIAKMAADPNPAIQDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDKLLAMPEIMRFIDRDETLSKLF 272
            +LV+L V +G  V    +D+ +RPF+RLQS XXXXXXXXXXXXXXXXXXXXXXXXX                +P+ +  +L  + K   +P+++F   +N+KGF+ +L N +IQHR+L++ PLL A  GF  I   RRL+ E+T   F+ G+  +L  A +AF  K+ +P +   T+AKMAA  +P IQ+LF+RA+AG+  AVEELQD F + H+ G++ +  RE+++ H  DK   MPE+M FI +D +L+K F
Sbjct:   12 LLVILAVFMGCTVHAQEHDRSSRPFSRLQSXXXXXXXXXXXXXXXXXXXXXXXXXXF--------------TKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAF 252          
BLAST of NO10G01650 vs. NCBI_GenBank
Match: EWM23494.1 (hypothetical protein Naga_100198g11 [Nannochloropsis gaditana])

HSP 1 Score: 152.9 bits (385), Expect = 1.700e-33
Identity = 78/188 (41.49%), Postives = 119/188 (63.30%), Query Frame = 0
Query:   85 GFNQPLRPNEKVKFLQKMAKGNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQIMGRRLNDEQTAEGFTRGVQNILTFAKEAFVKIKDPQQTVNTIAKMAADPNPAIQDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDKLLAMPEIMRFIDRDETLSKLFR 273
            G   P+    K  F QK+ K  +D +ELF     SK F+ +L+NVEIQHRI+E +P+L A  GFR+  GRRL D++T  GF++GV+N+L   K +     +P      IA+++   +P IQDLF+ A   D  +V EL+++     +PGV++ +L++V  + TFDKLL +PE+ RFID+D  +S++FR
Sbjct:  121 GLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFR 308          
BLAST of NO10G01650 vs. NCBI_GenBank
Match: XP_005854196.1 (hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526] >EKU22160.1 hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 147.1 bits (370), Expect = 9.100e-32
Identity = 118/285 (41.40%), Postives = 167/285 (58.60%), Query Frame = 0
Query:   20 VLVMLIVLVGAAVMVNANDK-TRPFTRLQSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFNQPLRPNEKVKFLQKMAKGNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFR---------------QIMGRRL------------NDE----QTAEGFTRGVQNILTFAKEAFV-KIKDPQQTVNTIAKMAADPNPAIQDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDKLLAMPEIMRFIDRDETLSKLF 272
            +LV+L V +G  V    +D+ +RPF+RLQS XXXXXXXXXXXXXXXXXXXXXXXXX                +P+ +  +L  + K   +P+++F   +N+KGF+ +L N +IQHR+L++ PLL A  GF                QI G+R             NDE    QT   F+ G+  +L  A +AF  K+ +P +   T+AKMAA  +P IQ+LF+RA+AG+  AVEELQD F + H+ G++ +  RE+ + H  DK   MPE+M FI +D +L+K F
Sbjct:   12 LLVVLAVFMGCTVHAQEHDRSSRPFSRLQSXXXXXXXXXXXXXXXXXXXXXXXXXXF--------------TKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEEVRWQIRGKRRRKREGNLIYGRGNDETLNAQTKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREITKQHNGDKFKQMPEMMHFIQKDASLAKAF 282          
BLAST of NO10G01650 vs. NCBI_GenBank
Match: EWM24107.1 (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 126.7 bits (317), Expect = 1.300e-25
Identity = 64/174 (36.78%), Postives = 101/174 (58.05%), Query Frame = 0
Query:   91 RPNEKVKFLQKMAKGNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQIMGRRLNDEQTAEGFTRGVQNILTFAKEAFVKIKDPQQTVNTIAKMAADPNPAIQDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDKLLAMPEIMRFIDRD 265
            +P+ ++  +Q   K  +D M+LF     S G + +L +VE QH+I+E +PLLAAFDGF++I GRRL+D  T  GFT G+ +IL    +    +KDP  +   ++++ A+    I + F  A AGD  A++ + +  N   +PGVN  VL+ V+ +    K+    EIMR I+ D
Sbjct:   52 KPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDD 225          
BLAST of NO10G01650 vs. NCBI_GenBank
Match: XP_005853961.1 (hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526] >EKU22395.1 hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 126.3 bits (316), Expect = 1.700e-25
Identity = 64/174 (36.78%), Postives = 101/174 (58.05%), Query Frame = 0
Query:   91 RPNEKVKFLQKMAKGNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQIMGRRLNDEQTAEGFTRGVQNILTFAKEAFVKIKDPQQTVNTIAKMAADPNPAIQDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDKLLAMPEIMRFIDRD 265
            +P+ ++  +Q   K  +D M+LF     S G + +L +VE QH+I+E +PLLAAFDGF++I GRRL+D  T  GFT G+ +IL    +    +KDP  +   ++++ A+    I + F  A AGD  A++ + +  N   +PGVN  VL+ V+ +    K+    EIMR I+ D
Sbjct:   52 KPDGELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDD 225          
BLAST of NO10G01650 vs. NCBI_GenBank
Match: XP_005854240.1 (hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526] >EKU22120.1 hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 91.3 bits (225), Expect = 5.900e-15
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 0
Query:   85 GFNQPLRPNEKVKFLQKMAKGNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQIMGRRLNDEQTAEGFTRGVQNIL----TFAKEAFV 182
            G   P+    K  F QK+ K  +D +ELF     SK F+ +L+NVEIQHRI+E +P+L A  GFR+  GRRL D++T  GF++GV+N+L    T AK A V
Sbjct:   67 GLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALV 167          
The following BLAST results are available for this feature:
BLAST of NO10G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM25436.14.600e-8464.86hypothetical protein Naga_100005g87 [Nannochlorops... [more]
EWM22205.11.000e-3545.10hypothetical protein Naga_100291g6 [Nannochloropsi... [more]
EWM23494.11.700e-3341.49hypothetical protein Naga_100198g11 [Nannochlorops... [more]
XP_005854196.19.100e-3241.40hypothetical protein NGA_0186800 [Nannochloropsis ... [more]
EWM24107.11.300e-2536.78hypothetical protein Naga_100286g4 [Nannochloropsi... [more]
XP_005853961.11.700e-2536.78hypothetical protein NGA_0461700 [Nannochloropsis ... [more]
XP_005854240.15.900e-1546.53hypothetical protein NGA_0024302 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001036NSK001036Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01650.1NO10G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G01650.2NO10G01650.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586314gene_4050Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g87gene5114Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01650.1NO10G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G01650.2NO10G01650.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01650 ID=NO10G01650|Name=NO10G01650|organism=Nannochloropsis oceanica|type=gene|length=1814bp
ACGACAGGGCTATACTGCACTCTGTACGTCAGCTGAGGTCATGACGACGG
CGATGAGGAGAAGCGAAGCAGCGCGCGGCTTCGTCCGCCGTGGAGGCGTA
CTCGTCATGTTGATTGTCCTGGTCGGAGCTGCTGTGATGGTAAACGCAAA
CGACAAGACCAGGCCCTTTACGCGCCTCCAATCCACCACGGGCGGGAGCG
GGGACGGACAACCTCAACAACACCCGCAACAAGAAGAGTTGCTTGAGCGG
CAGCAGCAGAGGAGAAGACGACGACAGCAAGAAGCAGCTAGTGGATTCAA
CCGTAAGTCAAGAGAGGAGAAGGACATGGAGACGCAGTTTTTCAAACCTT
TAACGAAGACGACAGCCAGACCGCAGCCATTTCTTTGCTTGACATGCCTC
CATTTTCTGTGGGATGGGAATTATTGGCAGGGCTTAAGCTCAGATGTGGT
GGGCAAGTATGGGCGCCCAGCATGTCTCCCAAAAACATGTCCTCGTCTGT
CCGGCACGGTGCTTCTCCCTTAACCGCGCATTTATTCCCACAATTTTCTC
ACAGAAGTGCCACGGATGCTGCTTATCGTACCCTGCAGTTGATTGTCAAG
TGCTTAAACACTCATGTACCCAACATTCGCCATCCCTTTTTCCGCCCTCC
ATACTCACTCGCCTCCCTTCTCTAACGGCACCCTCATCTATAGAACCCCT
CCGACCGAATGAGAAAGTCAAATTCCTGCAAAAGATGGCCAAGGGCAATG
TTGATCCTATGGAATTGTTTACCCGCGGTGTGAACAGCAAGGGCTTTCAG
GTCTTGTTGAAGAACGTGGAAATCCAGCATCGCATTTTGGAGGAGATGCC
TTTATTGGCTGCGTTTGATGGCTTCCGGCAGATTATGGGAAGACGCTTGA
ATGATGAGCAGgtatgtctcagtatgagcgaaggaataagaggtgtggag
ggcagaagaagaacgtggcgagaaaactgaggtcgtatgagatgacttgg
ggtgttatctgttccagtggcgctcgatcatctctataaaccactttcgc
attctaagtacacttactatgagcatattttgagacatagaattataagc
tatatatgatcagacgctaacgaaatctaattcgatctcaccattcttac
ctccctcctttcttccctccctctctcatttttccaatcagACCGCCGAG
GGCTTTACGCGAGGGGTGCAAAACATTCTAACCTTCGCCAAAGAAGCCTT
CGTCAAAATCAAAGATCCGCAACAAACTGTTAACACCATCGCAAAGATGG
CCGCGGATCCCAACCCTGCCATTCAAGATTTGTTCCGGCGGGCGCAGGCG
GGAGATAGTAAGGCTGTGGAGGAACTGCAGGATGTGTTCAATGACTTGCA
TTTCCCTGGGGTGAACGTACGGGTGCTGCGGGAGGTGGCGGAGAACCATA
CTTTTGACAAATTGCTGGCCATGCCCGAGATAATGCGATTTATTGATCGT
GATGAGACGCTTTCGAAGTTGTTTCGTTCGGATATCAAGGAGACTTTCTC
GTTTAAGGGGCAGGAGAATGGGATGTTTGGGGCGAGCAAAGAGCAGGCAG
CAAGTGGGGCTGCGGCAGCGAAGGTTGAAAGTTCCACGACGACAACCACA
ACGACGGTGCCATAAGAACAGACCAGGCCAAGGCAAAAGCATGAGCCCGG
AAGACCTATTTTTACATTTATTGACTTACGTGCCGCTTCAAAAATGTTAT
TTAATTTACAATAGAGGGGGGAGAATCTGGTGCATGGGCAAGAAATCATC
ACAAAGAATGAAAG
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protein sequence of NO10G01650.1

>NO10G01650.1-protein ID=NO10G01650.1-protein|Name=NO10G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MTTAMRRSEAARGFVRRGGVLVMLIVLVGAAVMVNANDKTRPFTRLQSTT
GGSGDGQPQQHPQQEELLERQQQRRRRRQQEAASGFNQPLRPNEKVKFLQ
KMAKGNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQ
IMGRRLNDEQTAEGFTRGVQNILTFAKEAFVKIKDPQQTVNTIAKMAADP
NPAIQDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDK
LLAMPEIMRFIDRDETLSKLFRSDIKETFSFKGQENGMFGASKEQAASGA
AAAKVESSTTTTTTTVP*
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protein sequence of NO10G01650.2

>NO10G01650.2-protein ID=NO10G01650.2-protein|Name=NO10G01650.2|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MWWASMGAQHVSQKHVLVCPARCFSLNRAFIPTIFSQKCHGCCLSYPAVD
CQVLKHSCTQHSPSLFPPSILTRLPSLTAPSSIEPLRPNEKVKFLQKMAK
GNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQIMGR
RLNDEQTAEGFTRGVQNILTFAKEAFVKIKDPQQTVNTIAKMAADPNPAI
QDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDKLLAM
PEIMRFIDRDETLSKLFRSDIKETFSFKGQENGMFGASKEQAASGAAAAK
VESSTTTTTTTVP*
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Synonyms
Publications