NO10G01530, NO10G01530 (gene) Nannochloropsis oceanica

Overview
NameNO10G01530
Unique NameNO10G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1749
Alignment locationchr10:438932..440680 +

Link to JBrowse

Properties
Property NameValue
DescriptionWd-40 repeat protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:438932..440680 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
[Close]
BLAST of NO10G01530 vs. NCBI_GenBank
Match: EWM25454.1 (wd-40 repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 278.1 bits (710), Expect = 3.700e-71
Identity = 141/213 (66.20%), Postives = 157/213 (73.71%), Query Frame = 0 
Query:  132 ASTHPAEIRAMTVFPGTTHIAVGYMGNEECTEIRVWDAVGQGRIGXXXXXXXXXXXXXXXXXXXXVVEVPPLWSVPGHDDTIVSLGVIGGEGLVSSGYDRTVRVWTPSSPLARATWSTPKEKEEASLIIHSGQNIAMAAVAWEDGRGLAYGCDDGSLHIWDLKRRREALSHPQRHPDGVKALDISYDGNTLCSAGADHAIRLLQTGATCDAAP 345
            AS HPAEIRAM +FPGT  IAVGYMGNEECTEIRVWD V QG I                       EVPPLWSVPGHDDT+VSLGV+G  GLVSSG+DRTVRVW+  S +  +        +EASL+I SG+NIAMA +AWEDGRGLAYGCDDGSLH+WDLKRRREALSHP RHPDGVKALDIS DG+ LCSAGADHA+RLL+  +    AP
Sbjct:   82 ASMHPAEIRAMAIFPGTGRIAVGYMGNEECTEIRVWD-VAQGGI--------------PAGEGAKPTEVPPLWSVPGHDDTVVSLGVLGENGLVSSGFDRTVRVWSQLSCIEAS-------DKEASLVIDSGENIAMAVMAWEDGRGLAYGCDDGSLHVWDLKRRREALSHPHRHPDGVKALDISKDGSLLCSAGADHALRLLRMDSASGVAP 272
The following BLAST results are available for this feature:
BLAST of NO10G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25454.13.700e-7166.20wd-40 repeat protein [Nannochloropsis gaditana][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001024NSK001024Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01530.1NO10G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554303gene_4062Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g98gene5124Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01530.1NO10G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01530 ID=NO10G01530|Name=NO10G01530|organism=Nannochloropsis oceanica|type=gene|length=1749bp
ATGGGTTTGCCGGGCCACGAGGAGCTTATTAATGCTGTCAAATTCACGCC
GAATGGACGATTGGTCGCCTCGGCCAGCGACGACCGGACGgtatgtgcta
ttgcatcaatggagggaggggtgatgattacgtgtggcaagttccatgtt
gggaaggaagatacaaagaaaggcaggaatgtgggtaaaacagaagtatt
tggtgtcatgcttaaccacgagggtggtggagtatattcgctttgacagc
cctcttgcttggcgctgtgtgtgtcgccatctctctccacatgttgaagc
gcaggactcccctgctcatgagcacacagcatacacacaaacgagcaccc
tccccactctatcgcatcgacccattagGTCCGCATCTGGAACGCTAGCA
CAGGGTCCTGTGTCAGGATACTGCGGGGCCACACGTCCATGGTCCGCAGT
CTCGCCGTCATGCCGGATGGAAATCGTGTTATTTCCGCTGGCACTGACGG
CACTTTAAGGCTGTGGGACATTGAGACGGGGCAAAACCTGGCGGTAGTGG
GCGGACGTTTGGGCCACGTGTTGTCCTTGATTGCCTTGCCGGATAGACGA
TGTGTGGTTTCTGGGGATTATGATAGGgtaggtgcgtgtgagacgcaagg
aaatgtgaaggaagtttggaagctgtatggacctctctctcctttttcct
tcgccgttcgtatcgtggttacttatcatctttcactgtttcttatctgc
ttgtccgaccccacagCACGTTAAAGTTTGGGACCTCTCGGCCTCGACGT
CTTTTATCGCCAAGGTGGGTGCCTCCACCCATCCCGCTGAAATCCGCGCC
ATGACCGTTTTTCCAGGCACAACGCACATCGCTGTCGGTTACATGGGGAA
TGAAGAATGTACAGAGATTAGGGTGTGGGATGCTGTAGGACAAGGAAGGA
TAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
ACGGAGGGAGGGAAGGTGGTGGAGGTGCCCCCGTTGTGGAGTGTGCCTGG
GCATGATGACACGATAGTGAGCTTGGGGGTGATTGGCGGGGAGGGATTGG
TGTCGTCGGGGTATGATCGGACGgtacgtctagaacaagaaagagccgat
cgggtttgcgagattgttgactcggatatagaaggtgcacgacaattggt
atatatatcagtgtagatatccaatttggactcagagaattacataaaac
agGTACGAGTCTGGACCCCATCCTCCCCTTTAGCACGTGCAACATGGTCC
ACACCAAAGGAGAAGGAAGAAGCCAGCCTCATCATCCATTCGGGACAGAA
CATCGCCATGGCAGCCGTAGCTTGGGAGGATGGTAGGGGGCTGGCCTACG
GGTGTGATGgtaagtccgccctttctccggaagattatcaatactagaat
aattcttcatttgcgtgctttcggactctacgatttcttgttctttgtga
gtaattcgccaccaagctttatttgcttacttacccgacatccacacccc
aaaaaatactaacacagACGGGAGCCTTCACATTTGGGACCTGAAGCGAC
GGCGTGAGGCACTGAGCCACCCACAACGGCATCCAGATGGGGTAAAGGCC
CTCGATATCTCCTACGATGGCAACACTTTGTGCTCTGCGGGTGCTGACCA
TGCCATTCGTCTTCTGCAAACAGGCGCGACCTGTGACGCTGCTCCCTAA
back to top

protein sequence of NO10G01530.1

>NO10G01530.1-protein ID=NO10G01530.1-protein|Name=NO10G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MGLPGHEELINAVKFTPNGRLVASASDDRTVRIWNASTGSCVRILRGHTS
MVRSLAVMPDGNRVISAGTDGTLRLWDIETGQNLAVVGGRLGHVLSLIAL
PDRRCVVSGDYDRHVKVWDLSASTSFIAKVGASTHPAEIRAMTVFPGTTH
IAVGYMGNEECTEIRVWDAVGQGRIGGGGGGGGGGGGGGGGTEGGKVVEV
PPLWSVPGHDDTIVSLGVIGGEGLVSSGYDRTVRVWTPSSPLARATWSTP
KEKEEASLIIHSGQNIAMAAVAWEDGRGLAYGCDDGSLHIWDLKRRREAL
SHPQRHPDGVKALDISYDGNTLCSAGADHAIRLLQTGATCDAAP*
back to top
Synonyms
Publications