NO10G01470, NO10G01470 (gene) Nannochloropsis oceanica

Overview
NameNO10G01470
Unique NameNO10G01470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1205
Alignment locationchr10:426007..427211 -

Link to JBrowse

Properties
Property NameValue
DescriptionGCK domain-containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:426007..427211 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012891GCK
Homology
BLAST of NO10G01470 vs. NCBI_GenBank
Match: EWM25395.1 (GCK domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 467.2 bits (1201), Expect = 4.200e-128
Identity = 233/339 (68.73%), Postives = 270/339 (79.65%), Query Frame = 0
Query:    1 MFAQHLRFASRLGAAGVGAAVLSSKHIEG----NSSTRCDAVGQQQLRRTTPPQQRLVFDHALDDREKDTAGFVGVFLDAASVARVQNAVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDGVLPGQVLDGIKYPPTRAIFRELEIPIACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECIQKFGLFREHLEGEGEE 336
            M+A  LR ASR+G                    +  TRC+    QQ  R    QQ+  FDHALDDREKDTAGFVGVFLDAASV RVQNAVGG L RNAHAL+QLHPEP +KRSFAPLFG+KA+VVVRGVA DVST+Q+VIIVDV+VG G   RL PS+NGHGS+PTI+MASESWDDDVADLLGVDLARRLLENGILH KGSWDGVLPGQ+LDGIKYPPTRA+F+EL+ P+ACEGT+CAS DYD ++ +C+++ +    +    ++E E +V+GECPLCTYMMNSPCKDVFVVFK+CIDKAGSTDE++DL RCE SAA VHECIQ FGLFREHL+ E EE
Sbjct:    1 MYAHQLRIASRVGXXXXXXXXXXXXXXXXXXXISKPTRCETAQHQQQLRRPSSQQQTYFDHALDDREKDTAGFVGVFLDAASVKRVQNAVGGSLGRNAHALVQLHPEPGVKRSFAPLFGSKAEVVVRGVAEDVSTRQKVIIVDVNVGGG---RLYPSRNGHGSIPTIAMASESWDDDVADLLGVDLARRLLENGILHAKGSWDGVLPGQLLDGIKYPPTRAVFQELDAPVACEGTICASTDYDKQSDKCIIRADTASGMAEKSQDEAE-EVEGECPLCTYMMNSPCKDVFVVFKSCIDKAGSTDEREDLTRCEASAAFVHECIQNFGLFREHLQEEAEE 335          
BLAST of NO10G01470 vs. NCBI_GenBank
Match: XP_005852585.1 (hypothetical protein NGA_0714000 [Nannochloropsis gaditana CCMP526] >EKU23248.1 hypothetical protein NGA_0714000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 465.7 bits (1197), Expect = 1.200e-127
Identity = 232/339 (68.44%), Postives = 269/339 (79.35%), Query Frame = 0
Query:    1 MFAQHLRFASRLGAAGVGAAVLSSKHIEG----NSSTRCDAVGQQQLRRTTPPQQRLVFDHALDDREKDTAGFVGVFLDAASVARVQNAVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDGVLPGQVLDGIKYPPTRAIFRELEIPIACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECIQKFGLFREHLEGEGEE 336
            M+A   R ASR+G                    +  TRC+    QQ  R    QQ+  FDHALDDREKDTAGFVGVFLDAASV RVQNAVGG L RNAHAL+QLHPEP +KRSFAPLFG+KA+VVVRGVA DVST+Q+VIIVDV+VG G   RL PS+NGHGS+PTI+MASESWDDDVADLLGVDLARRLLENGILH KGSWDGVLPGQ+LDGIKYPPTRA+F+EL+ P+ACEGT+CAS DYD ++ +C+++ +    +    ++E E +V+GECPLCTYMMNSPCKDVFVVFK+CIDKAGSTDE++DL RCE SAA VHECIQ FGLFREHL+ E EE
Sbjct:    1 MYAHQFRIASRVGXXXXXXXXXXXXXXXXXXXISKPTRCETAQHQQQLRRPSSQQQTYFDHALDDREKDTAGFVGVFLDAASVKRVQNAVGGSLGRNAHALVQLHPEPGVKRSFAPLFGSKAEVVVRGVAEDVSTRQKVIIVDVNVGGG---RLYPSRNGHGSIPTIAMASESWDDDVADLLGVDLARRLLENGILHAKGSWDGVLPGQLLDGIKYPPTRAVFQELDAPVACEGTICASTDYDKQSDKCIIRADTASGMAEKSQDEAE-EVEGECPLCTYMMNSPCKDVFVVFKSCIDKAGSTDEREDLTRCEASAAFVHECIQNFGLFREHLQEEAEE 335          
BLAST of NO10G01470 vs. NCBI_GenBank
Match: OQR91540.1 (hypothetical protein THRCLA_08955 [Thraustotheca clavata])

HSP 1 Score: 84.3 bits (207), Expect = 7.700e-13
Identity = 69/290 (23.79%), Postives = 122/290 (42.07%), Query Frame = 0
Query:   69 FVGVFLDAASVARVQN---AVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDGVLPG-----QVLDGIK---------YPPTRAIFRELEIPIACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECIQK----FGLFREHLEGEGEEKD 338
            FVGVFLDA S   +     ++   L   +  +++ +P  +   +FAP+ G   K+ V+    D  TQ  ++ V    G+  ++   P    H ++      S S ++  +      L  RL + G L ++ + DG+  G       LD  +         +PPT A    ++ P+   G VC S  YD    QC   +     ++ P           EC  C +M   PC   F  ++AC+D++ +  E D L++C      + +C+      + +  E  E + EE++
Sbjct:   41 FVGVFLDAKSQKELHERFASLHAKLPEQSAVVLKFNPTKDELSTFAPIMGHNVKIEVKAYVQDEHTQAAIVSVSTEHGAVQYAVECP----HVAI------SYSGEEGYSQAYANVLFERLQKEGTLTLEETEDGINIGISPYSGELDAFESKLFAFYNPFPPTSAKVELIKEPLVLSGVVCTSSGYDVETEQCKATE-----IKKP-----------ECGFCKFMKAGPCGAQFTAWEACLDESKAKGE-DFLEKCGEPTLLLRDCVDANPDYYSILNESPESDDEEEN 303          
BLAST of NO10G01470 vs. NCBI_GenBank
Match: XP_012196621.1 (hypothetical protein SPRG_02667 [Saprolegnia parasitica CBS 223.65] >KDO32976.1 hypothetical protein SPRG_02667 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 81.6 bits (200), Expect = 5.000e-12
Identity = 70/287 (24.39%), Postives = 117/287 (40.77%), Query Frame = 0
Query:   69 FVGVFLDAASVARVQN---AVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDGVLPG-QVLDG-------------IKYPPTRAIFRELEIPIACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECIQKFGLFREHLEGEGEEKDD 339
            FVGVFLDA S  +++    AV   +   +  +++ +P  +   +FAP+ G   K+ V+ +A D  TQ  V+ V    G+  ++   P              S S ++  +      L  RL + G L ++ + +G+  G    DG               +P T A    L+ P+   G VC+S  YD     C     V   ++ P           EC  C +M   PC   F  ++AC+D++ +  E D L++C      + +C+     +   L    E  DD
Sbjct:   43 FVGVFLDAKSRKQLEERFAAVHAKIPDQSTVVLKYNPTADELSTFAPIMGHNVKIEVKALAEDEHTQTAVVAVSTEHGAVQYAVECPHVT----------LSYSGEEGYSQAYANVLFERLQKTGSLTLEETDEGINVGLGAFDGELAAFDSKLFPFYSPFPATSAKMTVLDEPLVLSGVVCSSTGYDAETESC-----VATEIKKP-----------ECGFCKFMKAGPCGKQFTAWEACLDESKAKGE-DFLEKCGGVTLLLRDCVDANPEYYSVLNEPPESADD 302          
BLAST of NO10G01470 vs. NCBI_GenBank
Match: OQR88056.1 (hypothetical protein ACHHYP_07665 [Achlya hypogyna])

HSP 1 Score: 80.5 bits (197), Expect = 1.100e-11
Identity = 68/268 (25.37%), Postives = 111/268 (41.42%), Query Frame = 0
Query:   69 FVGVFLDAASVARVQ---NAVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDGVLPG-QVLDG-------------IKYPPTRAIFRELEIPIACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECI 320
            FVGVFLDA S   ++    AV   L      +++ +P      +FAP+ G   K+ V+ VA D  TQ  ++ V    G   ++   P    H ++      S S ++  +      L  RL + G L ++ + DG+  G    DG               +P T A    L+ P+   G VC+S  YD     C   +     ++ P           EC  C +M   PC   F  ++AC+D++ +  E D L++C      + +C+
Sbjct:   42 FVGVFLDAKSRQALEARFAAVHAKLPEQGAVVLKYNPTAAELGTFAPIMGQNVKIEVKAVAEDDHTQAAIVAVSTEHGPVQYAVECP----HVTI------SYSGEEGYSQAYANVLFERLQKTGSLTLEETDDGINVGLGAFDGELASFDSKLFPFYSPFPATTAKMSVLDEPLVLSGVVCSSASYDASTETCTATE-----IKKP-----------ECGFCKFMKAGPCGAQFTAWEACLDESKAKGE-DFLEKCGGPTLLLRDCV 282          
BLAST of NO10G01470 vs. NCBI_GenBank
Match: XP_008609702.1 (hypothetical protein SDRG_05748 [Saprolegnia diclina VS20] >EQC36921.1 hypothetical protein SDRG_05748 [Saprolegnia diclina VS20])

HSP 1 Score: 80.1 bits (196), Expect = 1.500e-11
Identity = 68/287 (23.69%), Postives = 117/287 (40.77%), Query Frame = 0
Query:   69 FVGVFLDAASVARVQN---AVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDGVLPG-QVLDG-------------IKYPPTRAIFRELEIPIACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECIQKFGLFREHLEGEGEEKDD 339
            FVGVFLDA S  +++    AV   +   +  +++ +P  +   +FAP+ G   K+ V+ +A D  TQ  V+ V    G+  ++   P              S S ++  +      L  RL + G L ++ + +G+  G    +G               +P T A    L+ P+   G VC+S  YD     C     +   ++ P           EC  C +M   PC   F  ++AC+D++ +  E D L++C      + +C+     +   L    E  DD
Sbjct:   43 FVGVFLDAKSRKQLEERFAAVHAKIPDQSTVVLKYNPTADELSTFAPIMGHNVKIEVKALAQDEHTQAAVVAVSTEHGAVQYAVECPHVT----------LSYSGEEGYSQAYANVLFERLQKTGSLTLEETDEGINVGLGAFEGELTAFDSKLFPFYSPFPATSAKMTVLDEPLVLSGVVCSSTGYDAETESC-----IATEIKKP-----------ECGFCKFMKAGPCGKQFTAWEACLDESKANGE-DFLEKCGGVTLLLRDCVDANPEYYSVLNEPPESADD 302          
BLAST of NO10G01470 vs. NCBI_GenBank
Match: XP_002899235.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY62204.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 77.0 bits (188), Expect = 1.200e-10
Identity = 64/265 (24.15%), Postives = 109/265 (41.13%), Query Frame = 0
Query:   69 FVGVFLDAASVARVQN---AVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDGVLPGQVLDGIKYPPTRAIFRELEIPI-----------ACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECI 320
            FVGVF++  S AR++    A  G        +++  P  E + +FAP+FG  AK+ V+G+A D   Q  ++ V    G         ++  H ++ +    S  +   + + L      R L +G   +   W G LP       K+ P  + F  +E  I           A +GTVC S  +D    +C          +AP         K EC  C +M   PC   F  ++ C+D    + + D +++C     ++ +C+
Sbjct:   46 FVGVFVEKESAARLRQQFPAKFGSADEPLVVVLRFQPTEEEQEAFAPIFGRAAKLHVKGLAEDDHAQTVLVAVTTETGESLEYE-GAAEPAHVTLTSAGGLSAGYSSVLLERLRASDKLRYLLDGDEEI-NEWTGELPA---FESKHLPLFSPFPAVEAKIVKVDAKQSEQLALQGTVCLSSRFDVATGEC----------QAP---------KAECGFCKFMKAGPCGKEFTAWETCLDNCKKSGD-DFIEKCGAQTLALRDCV 285          
BLAST of NO10G01470 vs. NCBI_GenBank
Match: ETK88676.1 (hypothetical protein L915_07105 [Phytophthora parasitica] >ETL42064.1 hypothetical protein L916_07058 [Phytophthora parasitica])

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-10
Identity = 72/287 (25.09%), Postives = 118/287 (41.11%), Query Frame = 0
Query:   69 FVGVFLDAASVARVQN---AVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDV--ADLLGVDLARRLLENGILHVKGSWDGVLPGQVLDGIKYPPTRAIFRELEIPI-----------ACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECIQKFGLFREHL-EGEGEEKDD 339
            FVGVF++  S AR++    A  G        +++  P  E + +FAP+ G  AK+ V+G+A D   Q  ++ V    G         ++  H ++ T +    +    V    L   D  R LL++        W G LP       K+ P  + F  +E  I           A +GTVC S  +D    +C          +AP         K EC  C +M   PC   F  ++AC+D+   + + D +++C     ++ +C+     +   L +G  EEK D
Sbjct:   48 FVGVFVEKESAARLRKQFPAKFGSADEPLVVVLRFQPTVEEQEAFAPILGRAAKLHVKGLAEDDHAQTVLVAVTTETGESLEYE-GAAEPAHATLSTSAGGLSAGYSSVLLERLRASDKLRYLLDDE--EDTNEWTGELPA---FESKHLPLFSPFPAVEAKIVKVDAKHSEQLALQGTVCLSSRFDVATGEC----------QAP---------KAECGFCKFMKAGPCGKEFTAWEACLDRCKKSGD-DFIEKCGAQTLALRDCVDANPEYYHVLNDGPDEEKPD 308          
BLAST of NO10G01470 vs. NCBI_GenBank
Match: ETI48784.1 (hypothetical protein F443_07231 [Phytophthora parasitica P1569] >ETL95222.1 hypothetical protein L917_06942 [Phytophthora parasitica] >ETM48442.1 hypothetical protein L914_07016 [Phytophthora parasitica])

HSP 1 Score: 76.3 bits (186), Expect = 2.100e-10
Identity = 72/287 (25.09%), Postives = 118/287 (41.11%), Query Frame = 0
Query:   69 FVGVFLDAASVARVQN---AVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDV--ADLLGVDLARRLLENGILHVKGSWDGVLPGQVLDGIKYPPTRAIFRELEIPI-----------ACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECIQKFGLFREHL-EGEGEEKDD 339
            FVGVF++  S AR++    A  G        +++  P  E + +FAP+ G  AK+ V+G+A D   Q  ++ V    G         ++  H ++ T +    +    V    L   D  R LL++        W G LP       K+ P  + F  +E  I           A +GTVC S  +D    +C          +AP         K EC  C +M   PC   F  ++AC+D+   + + D +++C     ++ +C+     +   L +G  EEK D
Sbjct:   48 FVGVFVEKESAARLRKQFPAKFGSADEPLVVVLRFQPTVEEQEAFAPILGRAAKLHVKGLAEDDHAQTVLVAVTTETGESLEYE-AAAEPAHVTLSTSAGGLSAGYSSVLLERLRASDKLRYLLDDE--EDTNEWTGELPA---FESKHLPLFSPFPAVEAKIVKVDAKHSEQLALQGTVCLSSRFDVATGEC----------QAP---------KAECGFCKFMKAGPCGKEFTAWEACLDRCKKSGD-DFIEKCGAQTLALRDCVDANPEYYHVLNDGPDEEKPD 308          
BLAST of NO10G01470 vs. NCBI_GenBank
Match: XP_008903846.1 (hypothetical protein PPTG_09814 [Phytophthora parasitica INRA-310] >ETN10720.1 hypothetical protein PPTG_09814 [Phytophthora parasitica INRA-310])

HSP 1 Score: 76.3 bits (186), Expect = 2.100e-10
Identity = 72/287 (25.09%), Postives = 118/287 (41.11%), Query Frame = 0
Query:   69 FVGVFLDAASVARVQN---AVGGPLSRNAHALIQLHPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRLTPSKNGHGSVPTISMASESWDDDV--ADLLGVDLARRLLENGILHVKGSWDGVLPGQVLDGIKYPPTRAIFRELEIPI-----------ACEGTVCASGDYDDRAAQCMVKKEVGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTDEQDDLQRCEPSAASVHECIQKFGLFREHL-EGEGEEKDD 339
            FVGVF++  S AR++    A  G        +++  P  E + +FAP+ G  AK+ V+G+A D   Q  ++ V    G         ++  H ++ T +    +    V    L   D  R LL++        W G LP       K+ P  + F  +E  I           A +GTVC S  +D    +C          +AP         K EC  C +M   PC   F  ++AC+D+   + + D +++C     ++ +C+     +   L +G  EEK D
Sbjct:   48 FVGVFVEKESAARLRKQFPAKFGSADEPLVVVLRFQPTVEEQEAFAPILGRAAKLHVKGLAEDDHAQTVLVAVTTETGESLEYE-GAAEPAHATLSTSAGGLSAGYSSVLLERLRASDKLRYLLDDE--EDTNEWTGELPA---FESKHLPLFSPFPAVEAKIVKVDAKHSEQLALQGTVCLSSRFDVATGKC----------QAP---------KAECGFCKFMKAGPCGKEFTAWEACLDRCKKSGD-DFIEKCGAQTLALRDCVDANPEYYHVLNDGPDEEKPD 308          
The following BLAST results are available for this feature:
BLAST of NO10G01470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
EWM25395.14.200e-12868.73GCK domain-containing protein [Nannochloropsis gad... [more]
XP_005852585.11.200e-12768.44hypothetical protein NGA_0714000 [Nannochloropsis ... [more]
OQR91540.17.700e-1323.79hypothetical protein THRCLA_08955 [Thraustotheca c... [more]
XP_012196621.15.000e-1224.39hypothetical protein SPRG_02667 [Saprolegnia paras... [more]
OQR88056.11.100e-1125.37hypothetical protein ACHHYP_07665 [Achlya hypogyna... [more]
XP_008609702.11.500e-1123.69hypothetical protein SDRG_05748 [Saprolegnia dicli... [more]
XP_002899235.11.200e-1024.15conserved hypothetical protein [Phytophthora infes... [more]
ETK88676.11.600e-1025.09hypothetical protein L915_07105 [Phytophthora para... [more]
ETI48784.12.100e-1025.09hypothetical protein F443_07231 [Phytophthora para... [more]
XP_008903846.12.100e-1025.09hypothetical protein PPTG_09814 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001018NSK001018Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01470.1NO10G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|423536gene_4069Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g105gene5130Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01470.1NO10G01470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01470 ID=NO10G01470|Name=NO10G01470|organism=Nannochloropsis oceanica|type=gene|length=1205bp
ATGTTTGCTCAGCACTTGCGGTTTGCGTCGCGCCTTGGAGCCGCCGGCGT
AGGCGCTGCGGTCCTCAGCAGCAAGCATATCGAAGGCAACAGCAGCACCC
GCTGCGACGCAGTGGGGCAGCAGCAGCTCAGGCGCACCACACCCCCACAA
CAGCGCTTAGTATTCGACCACGCCTTGGACGACCGGGAAAAGGACACGGC
TGGCTTCGTGGGGGTCTTTTTGGACGCGGCCTCGGTGGCTCGCGTGCAAA
ACGCGGTCGGCGGCCCCCTCTCCCGCAATGCCCACGCCCTCATCCAGCTC
CACCCCGAACCGGAATTGAAGCGCTCGTTTGCACCATTATTTGGGACCAA
Ggtatgtgtgtgtcaaggaggggccaaagcgagcggtgggatcgcaggaa
gatctgtcattcatctccctagttcggaggcactgacttgcatcctccat
aaggacacaagtttatgtcaactacctctcgggccactcacgacactgac
gtctcccctctgtctttttctcgtttaattgttgtctagGCCAAGGTCGT
GGTCCGCGGTGTGGCCACGGACGTCTCAACCCAGCAACAGGTCATCATCG
TGGACGTGAGCGTCGGCAGCGGCCCTCACAGCCGTCTGACCCCCTCCAAG
AACGGGCATGGGAGCGTTCCTACCATTTCGATGGCATCCGAAAGCTGGGA
CGATGATGTCGCAGATTTGCTAGGCGTGGATCTGGCGAGACGGTTGTTAG
AAAATGGGATATTGCATGTCAAGGGGTCGTGGGATGGGGTCTTGCCCGGA
CAGGTACTTGATGGGATTAAGTACCCACCCACGAGGGCAATTTTTAGGGA
GCTGGAAATCCCCATCGCATGTGAGGGGACGGTGTGTGCGTCCGGGGATT
ATGATGATCGAGCAGCGCAGTGTATGGTGAAGAAGGAGGTAGGGGTAGTG
GTGGAAGCACCGAAGGAGGAGGAAGGAGAAGGGGATGTGAAGGGGGAGTG
TCCGCTCTGTACTTACATGATGAATAGCCCGTGTAAGGACGTATTTGTTG
TATTTAAGGCTTGCATTGACAAGGCGGGGAGCACGGACGAACAGGATGAT
TTGCAGAGGTGCGAGCCGTCGGCAGCAAGCGTGCATGAGTGCATTCAGAA
GTTTGGGTTGTTCAGGGAGCATCTGGAGGGTGAGGGCGAGGAAAAGGATG
ATTAG
back to top

protein sequence of NO10G01470.1

>NO10G01470.1-protein ID=NO10G01470.1-protein|Name=NO10G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MFAQHLRFASRLGAAGVGAAVLSSKHIEGNSSTRCDAVGQQQLRRTTPPQ
QRLVFDHALDDREKDTAGFVGVFLDAASVARVQNAVGGPLSRNAHALIQL
HPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRL
TPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDG
VLPGQVLDGIKYPPTRAIFRELEIPIACEGTVCASGDYDDRAAQCMVKKE
VGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTD
EQDDLQRCEPSAASVHECIQKFGLFREHLEGEGEEKDD*
back to top
Synonyms
Publications