NO10G01460, NO10G01460 (gene) Nannochloropsis oceanica

Overview
NameNO10G01460
Unique NameNO10G01460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length912
Alignment locationchr10:424342..425253 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:424342..425253 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO10G01460 vs. NCBI_GenBank
Match: EWM25467.1 (hypothetical protein Naga_100005g106 [Nannochloropsis gaditana])

HSP 1 Score: 248.1 bits (632), Expect = 2.400e-62
Identity = 136/196 (69.39%), Postives = 152/196 (77.55%), Query Frame = 0
Query:    7 LFAALSFQASAFLLPPSLPSSR-DAVVLSAARTNDAVSSRQQHIGISLRSLSLAGLGTAVVLARDMAPANAKEKPEYLKEPTPEFEAMQKRAMEFEKLALEKKRVWKDKYAVLPEAKTEDELVKALDGLTAFVLAERGLPVGIKKQALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNTARDLTAPL 202
            LFA L F A AF   P++  SR  + VL A       S+RQQH+  + +SL LAGLGT   +A   APANA  K EYLKEPTPEFE MQKRAM FE+ ALEKK+VWKDKYAVLP+AKTE ELV ALDGLT FVL ERGLPVGIK Q LVSDIRKVKRAGK+AKIWNK AEISYE+LIY+INY+QSPNT+RDLT PL
Sbjct:   59 LFAILPFPACAFFTAPAVTQSRVGSTVLRAIHEVHDFSTRQQHLSSTFQSLVLAGLGTTAGIALSTAPANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL 254          
BLAST of NO10G01460 vs. NCBI_GenBank
Match: XP_005852586.1 (hypothetical protein NGA_0714200 [Nannochloropsis gaditana CCMP526] >EKU23249.1 hypothetical protein NGA_0714200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 212.2 bits (539), Expect = 1.500e-51
Identity = 108/130 (83.08%), Postives = 116/130 (89.23%), Query Frame = 0
Query:   72 APANAKEKPEYLKEPTPEFEAMQKRAMEFEKLALEKKRVWKDKYAVLPEAKTEDELVKALDGLTAFVLAERGLPVGIKKQALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNTARDLTAPL 202
            APANA  K EYLKEPTPEFE MQKRAM FE+ ALEKK+VWKDKYAVLP+AKTE ELV ALDGLT FVL ERGLPVGIK Q LVSDIRKVKRAGK+AKIWNK AEISYE+LIY+INY+QSPNT+RDLT PL
Sbjct:    4 APANAATKVEYLKEPTPEFEEMQKRAMAFERAALEKKKVWKDKYAVLPQAKTEQELVAALDGLTKFVLEERGLPVGIKMQTLVSDIRKVKRAGKDAKIWNKEAEISYEKLIYAINYQQSPNTSRDLTNPL 133          
BLAST of NO10G01460 vs. NCBI_GenBank
Match: XP_002294117.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88472.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.5 bits (197), Expect = 6.600e-12
Identity = 53/121 (43.80%), Postives = 70/121 (57.85%), Query Frame = 0
Query:   82 YLKEPTPEFEAMQKRAMEFEKLALEKKRVWKDKYAVL-PEAKTEDELVKALDGLTAFVLAERGLPVGIKKQALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNTARDLTAPL 202
            YL EPT EF+  +++ MEF K  L  K  +    A L  E+ TE+ELV+ L  L   V+   GLP+GIKK+    D+ KV R  K    W  N EI+Y++L   I Y+QSPNT +DL  PL
Sbjct:   87 YLTEPTEEFKESERQRMEFRKKQLLLKGGFVKVLARLTSESNTEEELVRDLSELKELVIQTGGLPLGIKKE----DMYKVIRGKKAKGNWPTNVEIAYQKLKSEIAYQQSPNTEKDLENPL 203          
BLAST of NO10G01460 vs. NCBI_GenBank
Match: EJK74246.1 (hypothetical protein THAOC_04086 [Thalassiosira oceanica])

HSP 1 Score: 77.8 bits (190), Expect = 4.300e-11
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 0
Query:   72 APANAKEKPEYLKEPTPEFEAMQKRAMEFEKLALEKKRVWKDKYAVL-PEAKTEDELVKALDGLTAFVLAERGLPVGIKKQALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNTARDLTAPL 202
            +PA A E   YL EPT EF+  +++ +EF +  L  K  +    A L  E+ TE++L+  L+ L   V+   GLP+GIKK+ +   IR  K  G     W  N EI+Y+ L   I Y+QSPNT +DL  PL
Sbjct:   58 SPALALE--TYLTEPTEEFKESERQRLEFRRKQLALKGEFVKVIARLTTESTTEEQLIGDLEELRGLVVKTGGLPIGIKKEEMYKVIRSKKAKG----FWPTNVEIAYQGLKSEIRYQQSPNTEKDLENPL 182          
BLAST of NO10G01460 vs. NCBI_GenBank
Match: XP_002184653.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43712.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 76.3 bits (186), Expect = 1.300e-10
Identity = 45/126 (35.71%), Postives = 74/126 (58.73%), Query Frame = 0
Query:   79 KPEYLKEPTPEFEAMQKRAMEFEKLALEKKRVWK---DKYAVLPEAKTEDELVKALDGLTAFVLAERGLPVGIKKQALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNTARDLTAPL 202
            +P++L+EPT +F+  +++A EF++ AL++K+ ++   D++    E   E  L   LD L   V    GLP GI K+  V  IR  +R  ++ + W    EI+Y+ L+  I Y+QSPNT RD+  P+
Sbjct:   90 RPKWLEEPTEDFKRNEQKATEFKRAALQRKQEFQAILDRFQ--EEPNDETILASDLDDLRRRVKQNGGLPQGISKEDTVKQIR--RRKARKPRYWPTQVEIAYQDLVSEILYQQSPNTDRDMDNPM 211          
BLAST of NO10G01460 vs. NCBI_GenBank
Match: OEU13391.1 (hypothetical protein FRACYDRAFT_269797 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-9
Identity = 63/196 (32.14%), Postives = 93/196 (47.45%), Query Frame = 0
Query:   11 LSFQASAFLLPPSLPSSRDAVVLSAARTNDAVSSRQ-QHIGISLRS--------LSLAGLGTAVVLARDMAPANAKEKPEYLKEPTPEFEAMQKRAMEFEKLALEKKRVWKDKY-AVLPEAKTEDELVKALDGLTAFVLAERGLPVGIKKQALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNTARD 197
            + +  S  +L   +PSS  +   +   TN   S+R   H+ +S            S AG+ +  VLA     A A+ +P YL EPT EF+  + + M F++  L  K+ +       L EA   D LVK L  L   ++   GLP+GIKK  L   IR  K  G     W   AE++Y+ LI  I ++QSPN  ++
Sbjct:    1 MKYSTSLAVLLAVMPSSVYSFT-APTNTNSCQSTRSCSHVSLSANRREILETAVASAAGIASFFVLAPPQ-EAMAEARPMYLSEPTDEFKENEAKGMAFKREQLAVKKEFNAALDTFLNEANDSDALVKDLKDLQNLIVKAAGLPLGIKKDDLFKQIRSKKGKG----FWPVPAEVAYQSLIGEIRFQQSPNLDKE 190          
BLAST of NO10G01460 vs. NCBI_GenBank
Match: GAX19582.1 (hypothetical protein FisN_19Hh160 [Fistulifera solaris])

HSP 1 Score: 67.4 bits (163), Expect = 5.800e-8
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 0
Query:   76 AKEKPEYLKEPTPEFEAMQKRAMEFEKLALEKKRVWKDKYAVL-PEAKTEDELVKALDGLTAFVLAERGLPVGIKKQALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNT 194
            A ++P YL EPT EF   +K+A +F++  L+ K  +      L  +   E  L   LD L   V    GLP+GI K+ +V  +R+     K  K W  N EI+Y+ L+  I Y+QSPNT
Sbjct:   84 APKRPTYLAEPTEEFRQNEKKASDFKREQLKVKGQFMALLQKLQDDPNDETTLANDLDELRRLVRKGGGLPLGITKEEVVKQVRR----RKARKFWPVNVEIAYQDLLAEIAYQQSPNT 198          
BLAST of NO10G01460 vs. NCBI_GenBank
Match: GAX09693.1 (hypothetical protein FisN_19Lh160 [Fistulifera solaris])

HSP 1 Score: 66.6 bits (161), Expect = 9.900e-8
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 0
Query:   76 AKEKPEYLKEPTPEFEAMQKRAMEFEKLALEKKRVWKDKYAVL-PEAKTEDELVKALDGLTAFVLAERGLPVGIKKQALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNT 194
            A ++P YL EPT EF   +K+A +F++  L+ K  +      L  +   E  L   LD L   V    GLP+GI K  +V  +R+     K  K W  N EI+Y+ L+  I Y+QSPNT
Sbjct:   85 APKRPTYLAEPTEEFRQNEKKASDFKREQLKVKGQFTALLQKLQDDPNDETTLANDLDELRRLVRKGGGLPLGITKDEVVKQVRR----RKARKFWPVNVEIAYQDLLAEIAYQQSPNT 199          
The following BLAST results are available for this feature:
BLAST of NO10G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM25467.12.400e-6269.39hypothetical protein Naga_100005g106 [Nannochlorop... [more]
XP_005852586.11.500e-5183.08hypothetical protein NGA_0714200 [Nannochloropsis ... [more]
XP_002294117.16.600e-1243.80predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK74246.14.300e-1139.69hypothetical protein THAOC_04086 [Thalassiosira oc... [more]
XP_002184653.11.300e-1035.71predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU13391.11.400e-932.14hypothetical protein FRACYDRAFT_269797 [Fragilario... [more]
GAX19582.15.800e-836.97hypothetical protein FisN_19Hh160 [Fistulifera sol... [more]
GAX09693.19.900e-836.97hypothetical protein FisN_19Lh160 [Fistulifera sol... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001017NSK001017Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01460.1NO10G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586393gene_4070Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g106gene5131Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01460.1NO10G01460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01460 ID=NO10G01460|Name=NO10G01460|organism=Nannochloropsis oceanica|type=gene|length=912bp
ATGAAGCCCTGCCATCTTTTGTTTGCGGCCCTTTCCTTCCAGGCATCCGC
CTTCCTCCTCCCCCCTTCTCTTCCCTCCTCCCGGGATGCAGTCGTCTTGA
GCGCAGCCCGCACGAACGATGCAGTTTCGTCCCGGCAACAGCACATCGGC
ATTTCCCTCCGTTCTTTGTCACTCGCAGGACTTGGCACCGCGGTCGTGTT
GGCGCGCGACATGGCGCCGGCAAATGCGAAAGAGAAGCCCGAGTATCTGA
AGGAGCCTACGCCCGAGTTTGAGgtacgtacctcaaggctgcattaacag
ccaacaatcaattacgtctcagaatatttcatgtctatgaaactggatgc
cgaattatttttctcccttcttgttccgcttgtccctccctcaccgccac
ccccattaaaccacttcttaagGCAATGCAAAAGCGCGCCATGGAGTTTG
AAAAACTAGCTCTCGAGAAGAAGAGGGTCTGGAAGGACAAGTACGCCGTG
CTACCCGAAGCCAAGACGGAGGATGAGTTAGTGAAGGCCCTGGATGGACT
CACCGCCTTCGTCCTGGCTGAACGAGGATTGCCGGTTGGCATTAAGAAGC
AGgtgcgtgggacaaattatcatctctttgttatgaatattatgtctata
tatatcgccagaaaaggccttggaataagattacaaatggacctattcgg
cctgaaaatccaaccttaaacattctgaaatcatgctgaatcatatatgc
aaaatacagGCCTTGGTCAGCGATATCCGCAAGGTGAAACGAGCGGGAAA
GGAGGCCAAAATCTGGAACAAGAATGCGGAGATCTCCTACGAGCAGCTGA
TCTATTCCATCAACTACGAACAAAGCCCTAATACAGCTCGTGACCTGACG
GCGCCTTTATAG
back to top

protein sequence of NO10G01460.1

>NO10G01460.1-protein ID=NO10G01460.1-protein|Name=NO10G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MKPCHLLFAALSFQASAFLLPPSLPSSRDAVVLSAARTNDAVSSRQQHIG
ISLRSLSLAGLGTAVVLARDMAPANAKEKPEYLKEPTPEFEAMQKRAMEF
EKLALEKKRVWKDKYAVLPEAKTEDELVKALDGLTAFVLAERGLPVGIKK
QALVSDIRKVKRAGKEAKIWNKNAEISYEQLIYSINYEQSPNTARDLTAP
L*
back to top
Synonyms
Publications