NO10G01420, NO10G01420 (gene) Nannochloropsis oceanica

Overview
NameNO10G01420
Unique NameNO10G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2354
Alignment locationchr10:417717..420070 +

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Properties
Property NameValue
DescriptionPoly (Adp-ribose) polymerase member 8
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:417717..420070 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003950NAD+ ADP-ribosyltransferase activity
GO:0003950NAD+ ADP-ribosyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR012317Poly(ADP-ribose)pol_cat_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO10G01420 vs. NCBI_GenBank
Match: EWM25357.1 (poly (adp-ribose) polymerase member 8 [Nannochloropsis gaditana])

HSP 1 Score: 382.9 bits (982), Expect = 2.100e-102
Identity = 286/775 (36.90%), Postives = 384/775 (49.55%), Query Frame = 0
Query:    3 ASETEVESCLISKEVAHVLAVLAMRNNPMKEDSLKQ--IGS----------------------------------------IQAXXXXXXXXXXXXXXXXXXXTIEIQRLEWLPQKRTLYLAAYPEVNLYASSSSSSFPLE-LTRAQQLLLSPPVVLEIYFPNLSSEPPFCFSTSDAGALVAERVNSSGSLLPLDRSSLLHAVSKITAIIKQEVDSIWPPELSGEDEGGRVGRREGGVDYRRDFARAINEYLEKHLVAADLMVSLLSMSKMHHNPTIKAPVPRFFYQREGSFMINQSALSSAIAAIPPLEVLRESG-----------------TEEERGARGLPFGSCVLLHHLFFRERVTVVDGREA------GREGGLRTVG-------------------QSPASSLLQPEQSPPSPYSSPSLITTLFSKAG-----FNTAS----STDLPCMVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSRFG------VVPGGKGGAPLFAYQIIALCEVINLPQYRCGLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALLLFKDPAVLRGPQPLPASSSSANTVMTPLQNNNINVLQQQQCP---INPQHRPFHPLPRPPVAQRHIYLQFIVWTVRVMLFGVALIIFLETVENLWVHRGASWGVGKDRK 675
            A   + E C+ISKEVA+V+AVL++R +PM E  +K+  +GS                                           XXXXXXXXXXXXX      +IEIQ LEW  + RTL+L+  P+V L A +S+SSFP E L RAQQLLL+PP+ L+++FP  +++ PFCFS++DAGA+VA R N   +L PL  +SLL A+  +TA++K E  ++WP               E    +RR +A  +   + +  +A DL +SLLSMSK   + T++ PVPRFF++ EG + ++++ L SA+ A+PPL V+   G                          LPF SC++L +L FRERVT+++  +A      GR G     G                   Q+ A   L    SP  P  S     T    +G     F  ++      D PC +FPL HA ++RF AL+ +HGT +GFHGS P +F SIVS GLRSLSGT+GM+NGA FGDGVYVASKCEVARNFG WGVPVW+HS+FG            G  P+FAYQ+IALCE+I++P+YRCG  G                                                                                RALLLFKDPA+L      P S+ +              V Q++  P    N   +P  PLPR PVA+R +YL F++  +RV+L G A IIFLETVE L   R  S G G+ R+
Sbjct:    4 AKHAKEEMCIISKEVANVMAVLSLRADPMIEGPMKRQHLGSSPFSTSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIHLYRLSIEIQSLEWDAEARTLHLSLNPDVALNA-ASASSFPTEVLIRAQQLLLAPPLELQLFFPESTAKAPFCFSSTDAGAIVARRANE--ALQPLKEASLLQALCLLTALVKDEAGAVWP---------------ENDPCWRRAWAERVVARVREQGLAVDLRLSLLSMSKA-QSATLRPPVPRFFFESEGGYAVDRTVLVSAVNAVPPLHVICGGGGGXXXXXXXXXXXXXXXXXXVEAVESLPFPSCLVLQYLLFRERVTLMNSSDAVAPGPRGRRGHEHDQGAAGGVEGGKEDEEWEGEKRQAHALDALAGLPSPGGPTPSQGGRETGLGPSGGPLRRFLASAFFGPRGDRPCFIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPG--------------------------------SDGSAVAVTAARQRSEPSTSTPVSSPTREVNRDRSEYWVVANDSHLVVRALLLFKDPAILPNAPTFPLSTRT--------------VRQRRGSPGAAANLPPQPSPPLPRAPVARRQLYLHFVLGVMRVILMGTAFIIFLETVEKLLARREKSLGGGRGRR 713          
BLAST of NO10G01420 vs. NCBI_GenBank
Match: CBN75069.1 (poly (ADP-ribose) polymerase family, member 8 [Ectocarpus siliculosus])

HSP 1 Score: 114.0 bits (284), Expect = 1.800e-21
Identity = 118/441 (26.76%), Postives = 181/441 (41.04%), Query Frame = 0
Query:   67 IQRLEWLPQKRTLYLAAYPEVNLYASSSSSSFP-------LELTRAQQLLLSP---PVVLEIYFPNLSSEPPFCFSTSDAGALVAERVNSSGSLLPLDRSSLLHAVSKITAIIKQEVDSIWPPELSGEDEGGRVGRREGGVDYRRDFARAINEYLEKHLVAADLMVSLLSMS-KMHHNPTIKAPVPRFFYQREGSFMINQSALSSAIAAIPPLEVLRESGTEEERGARGLPFGSCVLLH-----------HLFFRERVTVVDGREAGREGGLRTVGQSPASSLLQPEQSPPSPYSSPSLITTLFSKAGFNTASST-----DLPCMVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFG----GWGVPVWRHSRFGVVPGGKGGAPLFAYQIIALCEVINLP 477
            +Q+ EW+P +RTL L     V + A + S+  P        E+T +++ LL+    P +L+IYFP    + PFCF   D   LV     ++G L PL  +S+   V+ +   +K+E  S     LS  D+G   G   G     R  A A+   +++  + ADL+++LLSM+   +   T+  P P+      GS     +A  S +  IP   +L  S   +      LP  + V LH           +L  + R                              + P +                            D+P   F +    D  F A +E  G+   +HGS P NF SI++ GLR +SG++ MKNGAVFG+G+Y++  C+ A  F     G G  VW  S F  V       P  A+ ++    V   P
Sbjct:   28 LQKTEWVPHERTLVL----YVCVQAPAGSNCRPGGPEQVGEEVTSSKEELLNTLTRPKLLKIYFPPSLDQVPFCFCEDD--VLVPATEAANGRLRPLSCNSVRAVVTTVLQCVKREAAS--ASVLSSGDKGAEGG---GXAARARLAAEAVLAAIKEDPLGADLVLALLSMAVSSYRRDTVSTPFPKQLESPGGSKRA-YAAFISCLEGIP--SMLEMSRWTDAAQVLKLPPVAVVALHLVLVLQPARLRNLASKNRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFPAAXXXXXXXXXXXXXXXXXXXXXXXXXQLGDVPTYAFEVVLPSDPAFDAQAELGGSKVAYHGSSPENFHSILNTGLRVMSGSRLMKNGAVFGNGIYLSGSCKAAATFAYRGDGSGTTVWPRSTF--VDNHSASRPAVAHDVVTASGVAGTP 452          
BLAST of NO10G01420 vs. NCBI_GenBank
Match: XP_008609943.1 (hypothetical protein SDRG_05972 [Saprolegnia diclina VS20] >EQC36521.1 hypothetical protein SDRG_05972 [Saprolegnia diclina VS20])

HSP 1 Score: 71.2 bits (173), Expect = 1.400e-8
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 0
Query:  364 MVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSR 449
            +V  +H + D  F  ++ +HG    FHGS  ++F SI+  GL  +SGT+ M +G VFGDG+Y A   +VA NF  +G P  + +R
Sbjct:  562 LVAKVHQSHDPWFDEMAAQHGVAQCFHGSKLVHFHSILQNGLHVMSGTRHMSSGNVFGDGIYFAQSAQVAMNF-AYGTPSQQWTR 645          
BLAST of NO10G01420 vs. NCBI_GenBank
Match: XP_004333737.1 (Poly(ADPribose) polymerase catalytic domain containing protein [Acanthamoeba castellanii str. Neff] >ELR11724.1 Poly(ADPribose) polymerase catalytic domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 68.9 bits (167), Expect = 6.700e-8
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 0
Query:  372 QDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSRFGVVPGGKGGAPLFAYQIIALCEVINLP 477
            +++RF  L ++HG+   FHGSP  N+ SI+  GLR++S TK M +GA  G G+Y+A     ++ +   G   W  S+FG            +   +A+CEVI+ P
Sbjct:  596 KEARFVQLKKKHGSFMAFHGSPMENWHSILRNGLRNMSNTKNMLHGAAHGAGIYLAPNAGTSQGYMRAGTG-WAKSQFG-----------SSLSCLAMCEVIDHP 688          
BLAST of NO10G01420 vs. NCBI_GenBank
Match: OQR82040.1 (hypothetical protein THRCLA_23253 [Thraustotheca clavata])

HSP 1 Score: 66.2 bits (160), Expect = 4.400e-7
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 0
Query:  376 FTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFG-GWGVPVWRHS 448
            F AL+E+H T   +HGS   +F SI+  GL+ +SGT+ M +G +FGDG+Y A   +VA NF  G     W+HS
Sbjct:  214 FDALAEKHKTTVCYHGSKISHFHSILQNGLQIMSGTRHMGSGNIFGDGIYFAQSAQVAMNFAFGAASQHWQHS 286          
The following BLAST results are available for this feature:
BLAST of NO10G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM25357.12.100e-10236.90poly (adp-ribose) polymerase member 8 [Nannochloro... [more]
CBN75069.11.800e-2126.76poly (ADP-ribose) polymerase family, member 8 [Ect... [more]
XP_008609943.11.400e-840.00hypothetical protein SDRG_05972 [Saprolegnia dicli... [more]
XP_004333737.16.700e-835.24Poly(ADPribose) polymerase catalytic domain contai... [more]
OQR82040.14.400e-745.21hypothetical protein THRCLA_23253 [Thraustotheca c... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001014NSK001014Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01420.1NO10G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586408gene_4074Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g108gene5132Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01420.1NO10G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01420 ID=NO10G01420|Name=NO10G01420|organism=Nannochloropsis oceanica|type=gene|length=2354bp
ACTACAGTCACACACAGGAAGTAAGCTGCAACAAGCCTCAACTCTCGCTT
CTCCAACAATCACCGGCACAAGCAGCAGTTCTCATCCACCATGGCGGCGT
CAGAAACTGAGGTGGAGTCCTGCTTGATCAGCAAGGAGGTAGCGCACGTC
CTGGCGGTGCTGGCGATGCGCAATAACCCTATGAAGGAGGACTCACTGAA
Ggtacgtgttcgaagagatgagtgcggtgggaaggaatgggggaggtagt
atgtgcgtgcgccagttcgctgacactggctgcgaacacacgataataag
tggtaacgttcggcattgaaagcggcatctgtcttgattgaagtgcaggt
gcccacaatcctagaaatcctccccgtttaacccactggtggctccctcc
cgtcgaacccacaaaacagCAAATCGGATCCATCCAAGCCTCTTCCTCCT
CCAGCTCCTTCTCCTCCTCCCAATCATACTCCTCCTCTCCCTCCCTCACC
ATCGAAATTCAACGTCTAGAATGGCTCCCCCAGAAGCGGACACTTTATCT
AGCCGCCTACCCTGAGGTCAATCTCTACGCCTCTTCCTCCTCCTCCTCTT
TCCCTCTCGAGCTCACCCGAGCCCAACAGCTCCTCCTCTCTCCTCCGGTG
GTGCTCGAGATTTATTTTCCCAATTTATCTTCCGAGCCACCCTTCTGCTT
TTCCACTTCAGATGCTGGCGCGTTGGTCGCAGAGCGGGTGAACAGCAGCG
GTAGCCTCTTGCCTCTAGATCGATCGTCATTATTGCATGCCGTGTCCAAA
ATTACTGCGATTATCAAGCAGGAAGTGGATAGCATTTGGCCGCCGGAGTT
GAGTGGAGAAGACGAGGGTGGGAGGGTGGGAAGGAGGGAGGGTGGGGTGG
ATTACCGGAGGGACTTTGCTCGTGCGATTAATGAATATTTAGAGAAGCAC
TTGGTGGCGGCTGACTTGATGGTGTCATTGTTGAGTATGAGTAAGATGCA
CCATAACCCCACAATTAAAGCACCGGTGCCCAGATTCTTCTATCAGCGAG
AAGGGAGTTTTATGATCAATCAATCGGCGTTGTCTTCGGCAATAGCGGCG
ATTCCACCCTTGGAGGTATTGAGGGAGAGTGGGACGGAAGAGGAGCGAGG
GGCAAGGGGGTTGCCATTTGGGAGTTGTGTGTTGTTGCATCACTTGTTTT
TCCGGGAGCGGGTGACGGTGGTGGATGGGAGGGAGGCAGGGAGGGAGGGA
GGATTGCGGACCGTAGGACAGAGTCCTGCTTCGTCACTGTTGCAGCCAGA
ACAATCTCCCCCCTCCCCTTACTCCTCTCCCTCCTTAATCACCACCCTCT
TCTCTAAAGCCGGCTTTAACACCGCCTCCTCGACCGATCTCCCGTGCATG
GTATTTCCGCTGCATCATGCCCAAGACTCGCGCTTCACCGCCCTTTCTGA
GAGACACGGGACTTGCTACGGCTTCCACGGCTCCCCCCCCATCAACTTCT
TCTCAATCGTTTCCCTGGGCTTGAGATCGTTAAGTGGCACAAAAGGGATG
AAGAATGGGGCAGTTTTCGGCGATGGGGTGTATGTGGCCTCGAAATGCGA
GGTGGCGAGGAATTTTGGTGGGTGGGGAGTCCCGGTGTGGAGGCATAGCC
GCTTTGGGGTCGTCCCCGGGGGAAAGGGAGGTGCACCTTTGTTTGCGTAT
CAGATTATTGCCTTGTGTGAAGTTATTAACTTGCCGCAGTATCGGTGTGG
GTTGACGGGAGGGGGCAGCAGTGGCACACCAGCGCCTTCCACTTCTACCT
TTTCCTCCGACTTTTTTTCATCTTCTTCGAGCTGTCCCACTACGAGGCAG
CGCCGACGAGGGAGCAACGGCACGAGCAGCAGCAGCAGCAGTAGCAGCAG
CAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAAGAGCA
GCAGCAGCAGTGAGTACTGGGTTGTCGGTGACGACACCCACCTCGTTGTC
CGCGCTCTCCTTCTCTTCAAAGACCCCGCTGTTCTCCGTGGTCCCCAGCC
TCTTCCTGCATCCTCCTCTTCTGCCAATACCGTCATGACGCCGCTTCAAA
ACAATAATATCAATGTACTGCAACAACAGCAATGCCCGATCAACCCGCAA
CACCGTCCTTTTCACCCCTTACCTCGTCCTCCCGTTGCACAACGACACAT
TTACTTGCAATTTATCGTGTGGACCGTGCGGGTCATGCTTTTTGGCGTGG
CCCTCATTATATTCCTCGAGACGGTCGAAAATCTGTGGGTGCATCGGGGG
GCATCTTGGGGTGTCGGGAAGGATAGAAAAGGGAGGCGGAGCAAGGGGTG
GTAG
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protein sequence of NO10G01420.1

>NO10G01420.1-protein ID=NO10G01420.1-protein|Name=NO10G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=682bp
MAASETEVESCLISKEVAHVLAVLAMRNNPMKEDSLKQIGSIQASSSSSS
FSSSQSYSSSPSLTIEIQRLEWLPQKRTLYLAAYPEVNLYASSSSSSFPL
ELTRAQQLLLSPPVVLEIYFPNLSSEPPFCFSTSDAGALVAERVNSSGSL
LPLDRSSLLHAVSKITAIIKQEVDSIWPPELSGEDEGGRVGRREGGVDYR
RDFARAINEYLEKHLVAADLMVSLLSMSKMHHNPTIKAPVPRFFYQREGS
FMINQSALSSAIAAIPPLEVLRESGTEEERGARGLPFGSCVLLHHLFFRE
RVTVVDGREAGREGGLRTVGQSPASSLLQPEQSPPSPYSSPSLITTLFSK
AGFNTASSTDLPCMVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSI
VSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSRFG
VVPGGKGGAPLFAYQIIALCEVINLPQYRCGLTGGGSSGTPAPSTSTFSS
DFFSSSSSCPTTRQRRRGSNGTSSSSSSSSSSSSSSSSSSSSSSSKSSSS
SEYWVVGDDTHLVVRALLLFKDPAVLRGPQPLPASSSSANTVMTPLQNNN
INVLQQQQCPINPQHRPFHPLPRPPVAQRHIYLQFIVWTVRVMLFGVALI
IFLETVENLWVHRGASWGVGKDRKGRRSKGW*
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Synonyms
Publications