NO10G01420, NO10G01420 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G01420 vs. NCBI_GenBank
Match: EWM25357.1 (poly (adp-ribose) polymerase member 8 [Nannochloropsis gaditana]) HSP 1 Score: 382.9 bits (982), Expect = 2.100e-102 Identity = 286/775 (36.90%), Postives = 384/775 (49.55%), Query Frame = 0
Query: 3 ASETEVESCLISKEVAHVLAVLAMRNNPMKEDSLKQ--IGS----------------------------------------IQAXXXXXXXXXXXXXXXXXXXTIEIQRLEWLPQKRTLYLAAYPEVNLYASSSSSSFPLE-LTRAQQLLLSPPVVLEIYFPNLSSEPPFCFSTSDAGALVAERVNSSGSLLPLDRSSLLHAVSKITAIIKQEVDSIWPPELSGEDEGGRVGRREGGVDYRRDFARAINEYLEKHLVAADLMVSLLSMSKMHHNPTIKAPVPRFFYQREGSFMINQSALSSAIAAIPPLEVLRESG-----------------TEEERGARGLPFGSCVLLHHLFFRERVTVVDGREA------GREGGLRTVG-------------------QSPASSLLQPEQSPPSPYSSPSLITTLFSKAG-----FNTAS----STDLPCMVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSRFG------VVPGGKGGAPLFAYQIIALCEVINLPQYRCGLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALLLFKDPAVLRGPQPLPASSSSANTVMTPLQNNNINVLQQQQCP---INPQHRPFHPLPRPPVAQRHIYLQFIVWTVRVMLFGVALIIFLETVENLWVHRGASWGVGKDRK 675
A + E C+ISKEVA+V+AVL++R +PM E +K+ +GS XXXXXXXXXXXXX +IEIQ LEW + RTL+L+ P+V L A +S+SSFP E L RAQQLLL+PP+ L+++FP +++ PFCFS++DAGA+VA R N +L PL +SLL A+ +TA++K E ++WP E +RR +A + + + +A DL +SLLSMSK + T++ PVPRFF++ EG + ++++ L SA+ A+PPL V+ G LPF SC++L +L FRERVT+++ +A GR G G Q+ A L SP P S T +G F ++ D PC +FPL HA ++RF AL+ +HGT +GFHGS P +F SIVS GLRSLSGT+GM+NGA FGDGVYVASKCEVARNFG WGVPVW+HS+FG G P+FAYQ+IALCE+I++P+YRCG G RALLLFKDPA+L P S+ + V Q++ P N +P PLPR PVA+R +YL F++ +RV+L G A IIFLETVE L R S G G+ R+
Sbjct: 4 AKHAKEEMCIISKEVANVMAVLSLRADPMIEGPMKRQHLGSSPFSTSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIHLYRLSIEIQSLEWDAEARTLHLSLNPDVALNA-ASASSFPTEVLIRAQQLLLAPPLELQLFFPESTAKAPFCFSSTDAGAIVARRANE--ALQPLKEASLLQALCLLTALVKDEAGAVWP---------------ENDPCWRRAWAERVVARVREQGLAVDLRLSLLSMSKA-QSATLRPPVPRFFFESEGGYAVDRTVLVSAVNAVPPLHVICGGGGGXXXXXXXXXXXXXXXXXXVEAVESLPFPSCLVLQYLLFRERVTLMNSSDAVAPGPRGRRGHEHDQGAAGGVEGGKEDEEWEGEKRQAHALDALAGLPSPGGPTPSQGGRETGLGPSGGPLRRFLASAFFGPRGDRPCFIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPG--------------------------------SDGSAVAVTAARQRSEPSTSTPVSSPTREVNRDRSEYWVVANDSHLVVRALLLFKDPAILPNAPTFPLSTRT--------------VRQRRGSPGAAANLPPQPSPPLPRAPVARRQLYLHFVLGVMRVILMGTAFIIFLETVEKLLARREKSLGGGRGRR 713
BLAST of NO10G01420 vs. NCBI_GenBank
Match: CBN75069.1 (poly (ADP-ribose) polymerase family, member 8 [Ectocarpus siliculosus]) HSP 1 Score: 114.0 bits (284), Expect = 1.800e-21 Identity = 118/441 (26.76%), Postives = 181/441 (41.04%), Query Frame = 0
Query: 67 IQRLEWLPQKRTLYLAAYPEVNLYASSSSSSFP-------LELTRAQQLLLSP---PVVLEIYFPNLSSEPPFCFSTSDAGALVAERVNSSGSLLPLDRSSLLHAVSKITAIIKQEVDSIWPPELSGEDEGGRVGRREGGVDYRRDFARAINEYLEKHLVAADLMVSLLSMS-KMHHNPTIKAPVPRFFYQREGSFMINQSALSSAIAAIPPLEVLRESGTEEERGARGLPFGSCVLLH-----------HLFFRERVTVVDGREAGREGGLRTVGQSPASSLLQPEQSPPSPYSSPSLITTLFSKAGFNTASST-----DLPCMVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFG----GWGVPVWRHSRFGVVPGGKGGAPLFAYQIIALCEVINLP 477
+Q+ EW+P +RTL L V + A + S+ P E+T +++ LL+ P +L+IYFP + PFCF D LV ++G L PL +S+ V+ + +K+E S LS D+G G G R A A+ +++ + ADL+++LLSM+ + T+ P P+ GS +A S + IP +L S + LP + V LH +L + R + P + D+P F + D F A +E G+ +HGS P NF SI++ GLR +SG++ MKNGAVFG+G+Y++ C+ A F G G VW S F V P A+ ++ V P
Sbjct: 28 LQKTEWVPHERTLVL----YVCVQAPAGSNCRPGGPEQVGEEVTSSKEELLNTLTRPKLLKIYFPPSLDQVPFCFCEDD--VLVPATEAANGRLRPLSCNSVRAVVTTVLQCVKREAAS--ASVLSSGDKGAEGG---GXAARARLAAEAVLAAIKEDPLGADLVLALLSMAVSSYRRDTVSTPFPKQLESPGGSKRA-YAAFISCLEGIP--SMLEMSRWTDAAQVLKLPPVAVVALHLVLVLQPARLRNLASKNRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFPAAXXXXXXXXXXXXXXXXXXXXXXXXXQLGDVPTYAFEVVLPSDPAFDAQAELGGSKVAYHGSSPENFHSILNTGLRVMSGSRLMKNGAVFGNGIYLSGSCKAAATFAYRGDGSGTTVWPRSTF--VDNHSASRPAVAHDVVTASGVAGTP 452
BLAST of NO10G01420 vs. NCBI_GenBank
Match: XP_008609943.1 (hypothetical protein SDRG_05972 [Saprolegnia diclina VS20] >EQC36521.1 hypothetical protein SDRG_05972 [Saprolegnia diclina VS20]) HSP 1 Score: 71.2 bits (173), Expect = 1.400e-8 Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 0
Query: 364 MVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSR 449
+V +H + D F ++ +HG FHGS ++F SI+ GL +SGT+ M +G VFGDG+Y A +VA NF +G P + +R
Sbjct: 562 LVAKVHQSHDPWFDEMAAQHGVAQCFHGSKLVHFHSILQNGLHVMSGTRHMSSGNVFGDGIYFAQSAQVAMNF-AYGTPSQQWTR 645
BLAST of NO10G01420 vs. NCBI_GenBank
Match: XP_004333737.1 (Poly(ADPribose) polymerase catalytic domain containing protein [Acanthamoeba castellanii str. Neff] >ELR11724.1 Poly(ADPribose) polymerase catalytic domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 68.9 bits (167), Expect = 6.700e-8 Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 0
Query: 372 QDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSRFGVVPGGKGGAPLFAYQIIALCEVINLP 477
+++RF L ++HG+ FHGSP N+ SI+ GLR++S TK M +GA G G+Y+A ++ + G W S+FG + +A+CEVI+ P
Sbjct: 596 KEARFVQLKKKHGSFMAFHGSPMENWHSILRNGLRNMSNTKNMLHGAAHGAGIYLAPNAGTSQGYMRAGTG-WAKSQFG-----------SSLSCLAMCEVIDHP 688
BLAST of NO10G01420 vs. NCBI_GenBank
Match: OQR82040.1 (hypothetical protein THRCLA_23253 [Thraustotheca clavata]) HSP 1 Score: 66.2 bits (160), Expect = 4.400e-7 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 0
Query: 376 FTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFG-GWGVPVWRHS 448
F AL+E+H T +HGS +F SI+ GL+ +SGT+ M +G +FGDG+Y A +VA NF G W+HS
Sbjct: 214 FDALAEKHKTTVCYHGSKISHFHSILQNGLQIMSGTRHMGSGNIFGDGIYFAQSAQVAMNFAFGAASQHWQHS 286 The following BLAST results are available for this feature:
BLAST of NO10G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G01420 ID=NO10G01420|Name=NO10G01420|organism=Nannochloropsis oceanica|type=gene|length=2354bpback to top protein sequence of NO10G01420.1 >NO10G01420.1-protein ID=NO10G01420.1-protein|Name=NO10G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=682bpback to top Synonyms
Publications
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