NO10G01350, NO10G01350 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G01350 vs. NCBI_GenBank
Match: EWM25348.1 (topoisomerase 6 subunit b [Nannochloropsis gaditana]) HSP 1 Score: 615.1 bits (1585), Expect = 2.600e-172 Identity = 352/633 (55.61%), Postives = 402/633 (63.51%), Query Frame = 0 Query: 1 MASTGWSVTSWFSSWTTSSSSPTSQGGASRSISRS-RKDKHCHTYQSHQHHPPCSFLDSSGADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGSRKILCRYGMGCTHVLDPIHAERFWHPPVPGEGLPLATYEGKNGGYAAEAKGGDYHLMLMEGGGSASFPCHECGLFFEELGELRLHLQSKTAWSNLSLVGCRVSCLMDSKEWQEGLVVEYLEATGKHRVVFEHMGQSRWISMLRSAFFIVRRR--------------------PPLPSSA----ESKD-------PFPSPSPHNLSSSLPPSTWTYTEDLSLDYARAQAIMHEAYGYKIQETGHKTQGHLCVTDSDRALAEDAHSSLLYGELLPRGINKALGALRLRGAEAAVVYELGMGIGKVAMQIFLQFSS------TSEGGEGRGSELSPEEPGREGGRTRKRKTRLRRVYGVELSSARFVMAEAAAHRLCKERPGEFRMTEWVKGRRVVVESIAD---------------GLETADIVLLETDLGAAVHHDLCMLLRRMKSGARAFTYLDLRKIWGGGEGGGKEDRRRGGIFPFRQLEINRVVSDRYATSWSVNRGHHFYLWMKVLESGNDDLIVPEGHPEPSEWVPDAGYG 581 M ST WSV+SW SS+ SR+ R K + H HH P + G K+LCRYGMGCTHV DP+HAE+FWHPPVPGE + + T E +NGGYAAEAKGG+ + S+PCHECGL F +L LRLHLQ KTAWSN SLVGCRVSCL+D +EWQEGLVVEY EA GKHR+VFEH+G+SRW+SMLR+AFFI+ P LP SA ESKD S L+ S WTY E++SL YARAQAIMH AYG +IQETGHKT+GHLCVT++DR LA+DA SSLLYGELLPRGINKALG +RLRG+EA VV+ELGMGIGKVAMQ+FLQ + +EG G G E + R GG RLRRVYGVELSSARF +AEAAAHRLC+E P +F + W +G+R+VVE + GL+ ADIVLLETDLGA VH +LC LLR MKSGARAFTYLDLR IWG GG E G FPFRQLEINR VSDRYATSWSVNRGHHFYLWMKVLESG+D L+VPEGHPEPSEWVPDA G Sbjct: 15 MGSTAWSVSSWLSSFNNGGRGHDPAVSPSRTPPRGVGKGRAPPCRPHHSHHLPSKCCERGGC-----------------GKRSNGCKYSSPSRPRPGPKLLCRYGMGCTHVSDPVHAEQFWHPPVPGEPVCM-TLEDRNGGYAAEAKGGENLFSESSFAVTRSYPCHECGLCFRDLSVLRLHLQRKTAWSNQSLVGCRVSCLVDHREWQEGLVVEYREAAGKHRIVFEHVGESRWLSMLRTAFFIIXXXXXXXXXXXXXXXXXXLAPFDPFLPHSAGSVPESKDVDARERQKDRSAPSLALAQSERVGHWTYVEEISLGYARAQAIMHRAYGNRIQETGHKTRGHLCVTETDRVLAQDAQSSLLYGELLPRGINKALGDMRLRGSEAEVVFELGMGIGKVAMQVFLQLTGQTVTEIETEGAWGEGLE---DGDPRRGG-------RLRRVYGVELSSARFFIAEAAAHRLCREYPRDFGIQAWERGQRIVVEKMGSGAVLEMEVGNLLAVRGLDRADIVLLETDLGAGVHPELCALLRSMKSGARAFTYLDLRSIWGA--EGGVEGEVEAGTFPFRQLEINRSVSDRYATSWSVNRGHHFYLWMKVLESGSDVLMVPEGHPEPSEWVPDAWAG 617
BLAST of NO10G01350 vs. NCBI_GenBank
Match: CBJ26512.1 (Topoisomerase 6 subunit B [Ectocarpus siliculosus]) HSP 1 Score: 327.0 bits (837), Expect = 1.400e-85 Identity = 177/450 (39.33%), Postives = 242/450 (53.78%), Query Frame = 0 Query: 160 SASFPCHECGLFFEELGELRLHLQSKTAWSNLSLVGCRVSCLMDSKEWQEGLVVEYLEATGKHRVVFEHMGQSRWISMLRSAFFIVRRRPPLPSSAESKDPFPSPSPHNLSSSLPPSTWTYTEDLSLDYARAQAIMHEAYGYKIQETGHKTQGHLCVTDSDRALAEDAHSSLLYGELLPRGINKALGALRLRGAEAAVVYELGMGIGKVAMQIFLQFSSTSEGGEGRGSELSPEEPGREGGRTRKRKTRLRRVYGVELSSARFVMAEAAAHRLCKERPGEFRMTEWVKGRRVVVESIAD-----------------------------------------------------GLETADIVLLETDLGAAVHHDLCMLLRRMKSGARAFTYLDLRKIWGGGEGGGKEDRRRGGIFPFRQLEINRVVSDRYATSWSVNRGHHFYLWMKVLES 557 + F C+ECGL F + EL+LH+ KTAWSN L+G RVSCL+D++EW EGLV +Y +GKH V + G+ RW++ML++AF+IV R P + +P P+ P W Y ED+S ++ A +++H AYG ++QETGHKT GH CVTD D+ A + SLLYGELLPRG+NKA+G L A+A+ +Y+LGMG GKVAMQ+FLQF + L RVYG+ELS ARF + E A L + +PG + + E + G+ + +E++A L AD+VLLETD+ + VH L L M+ G+ A TYLDLRK+W FP+RQ+E+NR +SDR+ TSWSV+RGHHF+LW K+L S Sbjct: 142 ACGFLCYECGLAFHSVKELQLHMVRKTAWSNQGLIGSRVSCLVDNREWHEGLVTQY-HKSGKHCVEYRRSGEKRWVNMLKTAFYIVERAQPTGGEVKEMEPDPT------EGLAPIEKWHYHEDISPEFCMALSLLHRAYGCRVQETGHKTVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPN------------------------------LTRVYGIELSQARFELGEEALFALMELQPGAYTIKEHIPGQFISIETLAQDXXXXXXXXXXXXXXXLAEGGGWREGGAGWEHLCRGPPGRTLEFACGNLFDVTNLAQADLVLLETDVSSDVHPQLSRFLTGMRKGSHALTYLDLRKMWSSLP------------FPYRQVEVNRSLSDRFPTSWSVHRGHHFFLWHKILPS 542
BLAST of NO10G01350 vs. NCBI_GenBank
Match: XP_005774106.1 (hypothetical protein EMIHUDRAFT_435671 [Emiliania huxleyi CCMP1516] >EOD21677.1 hypothetical protein EMIHUDRAFT_435671 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 80.1 bits (196), Expect = 3.000e-11 Identity = 83/317 (26.18%), Postives = 118/317 (37.22%), Query Frame = 0 Query: 289 ARAQAIMHEAYGYKIQETGHKTQGH-LCVTDSDRALAEDAHSSLLYGELLPRGINKALGALRLRGAEAAVVYELGMGIGKVAMQIFLQFSSTSEGGEGRGSELSPEEPGREGGRTRKRKTRLRRVYGVELSSARFVMAEAAAHRLCKERPGEFRMTEWVKGRRVVVESIADGLETA---------DIVLLETD---LGAA----------VHHDLCM------------LLRRMKSGARAFTYLDLRKIWGGGEGG--------------------GKEDRRRGGIFPFRQLEINRVVSDRYATSWSVNRGHHFYLW 551 A A++ AYG G T GH +T ++ L E YGE+LP G+ KALG L + ELG G GKVA+Q FL+ S L RV VEL++AR+ + EAA RLC+ P F + G V + +T+ ++ L D LGAA V ++C+ LLR K+G+R +Y L + GG R PF + N + D +A SW+ G+HF+ + Sbjct: 7 APVDAVLTTAYGDDAGLHGLSTAGHNAALTPAEVLLEEAERHDFQYGEVLPAGVRKALGEAHLDAQSGRSLVELGAGTGKVALQAFLECPS------------------------------LLRVTAVELAAARYRVGEAALLRLCERIPERFSLLAHAPGACVRISERPPAADTSAHQREGSSRELELSVGDVFELGAAARAALAEADVVFFEVCLPRTAEAAARGLALLRSTKAGSRVLSYEALEALEEEAAGGSTVCSPRAHPRVCVGDDGVAAHAAHRPSAQNPFVRRPANASLGDTFAASWAPEEGYHFHCY 293
BLAST of NO10G01350 vs. NCBI_GenBank
Match: XP_005778389.1 (hypothetical protein EMIHUDRAFT_460748, partial [Emiliania huxleyi CCMP1516] >EOD25960.1 hypothetical protein EMIHUDRAFT_460748, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 69.3 bits (168), Expect = 5.300e-8 Identity = 72/256 (28.12%), Postives = 100/256 (39.06%), Query Frame = 0 Query: 289 ARAQAIMHEAYGYKIQETGHKTQGH-LCVTDSDRALAEDAHSSLLYGELLPRGINKALGALRLRGAEAAVVYELGMGIGKVAMQIFLQFSSTSEGGEGRGSELSPEEPGREGGRTRKRKTRLRRVYGVELSSARFVMAEAAAHRLCKERPGEFRMTEWVKGRRVVVESIADGLETA---------DIVLLETD---LGAA----------VHHDLCM------------LLRRMKSGARAFTYLDLRKIWGGGEGG 510 A A++ AYG G T GH +T ++ L E YGE+LP G+ KALG L + ELG G GKVA+Q FL+ S L RV VEL++AR+ + EAA RLC+ P F + G V + +T+ ++ L D LGAA V ++C+ LLR K+G+R +Y L + GG Sbjct: 7 APVDAVLTTAYGDDAGLHGLSTAGHNAALTPAEVLLEEAERHDFQYGEVLPAGVRKALGEAHLDAQSGRSLVELGAGTGKVALQAFLECPS------------------------------LLRVTAVELAAARYRVGEAALLRLCERIPERFSLLAHAPGACVRISERPPAADTSAHQREGSSRELELSVGDVFELGAAARAALAEADVVFFEVCLPRTAEAAARGLALLRSTKAGSRVLSYEALEALEEEAAGG 232 The following BLAST results are available for this feature:
BLAST of NO10G01350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G01350 ID=NO10G01350|Name=NO10G01350|organism=Nannochloropsis oceanica|type=gene|length=2942bpback to top protein sequence of NO10G01350.1 >NO10G01350.1-protein ID=NO10G01350.1-protein|Name=NO10G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=706bpback to top Synonyms
Publications
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