NO10G01350, NO10G01350 (gene) Nannochloropsis oceanica

Overview
NameNO10G01350
Unique NameNO10G01350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2942
Alignment locationchr10:397461..400402 +

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Properties
Property NameValue
DescriptionTopoisomerase 6 subunit b
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:397461..400402 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016853isomerase activity
Homology
BLAST of NO10G01350 vs. NCBI_GenBank
Match: EWM25348.1 (topoisomerase 6 subunit b [Nannochloropsis gaditana])

HSP 1 Score: 615.1 bits (1585), Expect = 2.600e-172
Identity = 352/633 (55.61%), Postives = 402/633 (63.51%), Query Frame = 0
Query:    1 MASTGWSVTSWFSSWTTSSSSPTSQGGASRSISRS-RKDKHCHTYQSHQHHPPCSFLDSSGADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGSRKILCRYGMGCTHVLDPIHAERFWHPPVPGEGLPLATYEGKNGGYAAEAKGGDYHLMLMEGGGSASFPCHECGLFFEELGELRLHLQSKTAWSNLSLVGCRVSCLMDSKEWQEGLVVEYLEATGKHRVVFEHMGQSRWISMLRSAFFIVRRR--------------------PPLPSSA----ESKD-------PFPSPSPHNLSSSLPPSTWTYTEDLSLDYARAQAIMHEAYGYKIQETGHKTQGHLCVTDSDRALAEDAHSSLLYGELLPRGINKALGALRLRGAEAAVVYELGMGIGKVAMQIFLQFSS------TSEGGEGRGSELSPEEPGREGGRTRKRKTRLRRVYGVELSSARFVMAEAAAHRLCKERPGEFRMTEWVKGRRVVVESIAD---------------GLETADIVLLETDLGAAVHHDLCMLLRRMKSGARAFTYLDLRKIWGGGEGGGKEDRRRGGIFPFRQLEINRVVSDRYATSWSVNRGHHFYLWMKVLESGNDDLIVPEGHPEPSEWVPDAGYG 581
            M ST WSV+SW SS+             SR+  R   K +       H HH P    +  G                                     K+LCRYGMGCTHV DP+HAE+FWHPPVPGE + + T E +NGGYAAEAKGG+          + S+PCHECGL F +L  LRLHLQ KTAWSN SLVGCRVSCL+D +EWQEGLVVEY EA GKHR+VFEH+G+SRW+SMLR+AFFI+                       P LP SA    ESKD          S     L+ S     WTY E++SL YARAQAIMH AYG +IQETGHKT+GHLCVT++DR LA+DA SSLLYGELLPRGINKALG +RLRG+EA VV+ELGMGIGKVAMQ+FLQ +        +EG  G G E   +   R GG       RLRRVYGVELSSARF +AEAAAHRLC+E P +F +  W +G+R+VVE +                 GL+ ADIVLLETDLGA VH +LC LLR MKSGARAFTYLDLR IWG    GG E     G FPFRQLEINR VSDRYATSWSVNRGHHFYLWMKVLESG+D L+VPEGHPEPSEWVPDA  G
Sbjct:   15 MGSTAWSVSSWLSSFNNGGRGHDPAVSPSRTPPRGVGKGRAPPCRPHHSHHLPSKCCERGGC-----------------GKRSNGCKYSSPSRPRPGPKLLCRYGMGCTHVSDPVHAEQFWHPPVPGEPVCM-TLEDRNGGYAAEAKGGENLFSESSFAVTRSYPCHECGLCFRDLSVLRLHLQRKTAWSNQSLVGCRVSCLVDHREWQEGLVVEYREAAGKHRIVFEHVGESRWLSMLRTAFFIIXXXXXXXXXXXXXXXXXXLAPFDPFLPHSAGSVPESKDVDARERQKDRSAPSLALAQSERVGHWTYVEEISLGYARAQAIMHRAYGNRIQETGHKTRGHLCVTETDRVLAQDAQSSLLYGELLPRGINKALGDMRLRGSEAEVVFELGMGIGKVAMQVFLQLTGQTVTEIETEGAWGEGLE---DGDPRRGG-------RLRRVYGVELSSARFFIAEAAAHRLCREYPRDFGIQAWERGQRIVVEKMGSGAVLEMEVGNLLAVRGLDRADIVLLETDLGAGVHPELCALLRSMKSGARAFTYLDLRSIWGA--EGGVEGEVEAGTFPFRQLEINRSVSDRYATSWSVNRGHHFYLWMKVLESGSDVLMVPEGHPEPSEWVPDAWAG 617          
BLAST of NO10G01350 vs. NCBI_GenBank
Match: CBJ26512.1 (Topoisomerase 6 subunit B [Ectocarpus siliculosus])

HSP 1 Score: 327.0 bits (837), Expect = 1.400e-85
Identity = 177/450 (39.33%), Postives = 242/450 (53.78%), Query Frame = 0
Query:  160 SASFPCHECGLFFEELGELRLHLQSKTAWSNLSLVGCRVSCLMDSKEWQEGLVVEYLEATGKHRVVFEHMGQSRWISMLRSAFFIVRRRPPLPSSAESKDPFPSPSPHNLSSSLPPSTWTYTEDLSLDYARAQAIMHEAYGYKIQETGHKTQGHLCVTDSDRALAEDAHSSLLYGELLPRGINKALGALRLRGAEAAVVYELGMGIGKVAMQIFLQFSSTSEGGEGRGSELSPEEPGREGGRTRKRKTRLRRVYGVELSSARFVMAEAAAHRLCKERPGEFRMTEWVKGRRVVVESIAD-----------------------------------------------------GLETADIVLLETDLGAAVHHDLCMLLRRMKSGARAFTYLDLRKIWGGGEGGGKEDRRRGGIFPFRQLEINRVVSDRYATSWSVNRGHHFYLWMKVLES 557
            +  F C+ECGL F  + EL+LH+  KTAWSN  L+G RVSCL+D++EW EGLV +Y   +GKH V +   G+ RW++ML++AF+IV R  P     +  +P P+          P   W Y ED+S ++  A +++H AYG ++QETGHKT GH CVTD D+  A +   SLLYGELLPRG+NKA+G   L  A+A+ +Y+LGMG GKVAMQ+FLQF +                              L RVYG+ELS ARF + E A   L + +PG + + E + G+ + +E++A                                                       L  AD+VLLETD+ + VH  L   L  M+ G+ A TYLDLRK+W                FP+RQ+E+NR +SDR+ TSWSV+RGHHF+LW K+L S
Sbjct:  142 ACGFLCYECGLAFHSVKELQLHMVRKTAWSNQGLIGSRVSCLVDNREWHEGLVTQY-HKSGKHCVEYRRSGEKRWVNMLKTAFYIVERAQPTGGEVKEMEPDPT------EGLAPIEKWHYHEDISPEFCMALSLLHRAYGCRVQETGHKTVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPN------------------------------LTRVYGIELSQARFELGEEALFALMELQPGAYTIKEHIPGQFISIETLAQDXXXXXXXXXXXXXXXLAEGGGWREGGAGWEHLCRGPPGRTLEFACGNLFDVTNLAQADLVLLETDVSSDVHPQLSRFLTGMRKGSHALTYLDLRKMWSSLP------------FPYRQVEVNRSLSDRFPTSWSVHRGHHFFLWHKILPS 542          
BLAST of NO10G01350 vs. NCBI_GenBank
Match: XP_005774106.1 (hypothetical protein EMIHUDRAFT_435671 [Emiliania huxleyi CCMP1516] >EOD21677.1 hypothetical protein EMIHUDRAFT_435671 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 80.1 bits (196), Expect = 3.000e-11
Identity = 83/317 (26.18%), Postives = 118/317 (37.22%), Query Frame = 0
Query:  289 ARAQAIMHEAYGYKIQETGHKTQGH-LCVTDSDRALAEDAHSSLLYGELLPRGINKALGALRLRGAEAAVVYELGMGIGKVAMQIFLQFSSTSEGGEGRGSELSPEEPGREGGRTRKRKTRLRRVYGVELSSARFVMAEAAAHRLCKERPGEFRMTEWVKGRRVVVESIADGLETA---------DIVLLETD---LGAA----------VHHDLCM------------LLRRMKSGARAFTYLDLRKIWGGGEGG--------------------GKEDRRRGGIFPFRQLEINRVVSDRYATSWSVNRGHHFYLW 551
            A   A++  AYG      G  T GH   +T ++  L E       YGE+LP G+ KALG   L       + ELG G GKVA+Q FL+  S                              L RV  VEL++AR+ + EAA  RLC+  P  F +     G  V +       +T+         ++ L   D   LGAA          V  ++C+            LLR  K+G+R  +Y  L  +     GG                         R     PF +   N  + D +A SW+   G+HF+ +
Sbjct:    7 APVDAVLTTAYGDDAGLHGLSTAGHNAALTPAEVLLEEAERHDFQYGEVLPAGVRKALGEAHLDAQSGRSLVELGAGTGKVALQAFLECPS------------------------------LLRVTAVELAAARYRVGEAALLRLCERIPERFSLLAHAPGACVRISERPPAADTSAHQREGSSRELELSVGDVFELGAAARAALAEADVVFFEVCLPRTAEAAARGLALLRSTKAGSRVLSYEALEALEEEAAGGSTVCSPRAHPRVCVGDDGVAAHAAHRPSAQNPFVRRPANASLGDTFAASWAPEEGYHFHCY 293          
BLAST of NO10G01350 vs. NCBI_GenBank
Match: XP_005778389.1 (hypothetical protein EMIHUDRAFT_460748, partial [Emiliania huxleyi CCMP1516] >EOD25960.1 hypothetical protein EMIHUDRAFT_460748, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 69.3 bits (168), Expect = 5.300e-8
Identity = 72/256 (28.12%), Postives = 100/256 (39.06%), Query Frame = 0
Query:  289 ARAQAIMHEAYGYKIQETGHKTQGH-LCVTDSDRALAEDAHSSLLYGELLPRGINKALGALRLRGAEAAVVYELGMGIGKVAMQIFLQFSSTSEGGEGRGSELSPEEPGREGGRTRKRKTRLRRVYGVELSSARFVMAEAAAHRLCKERPGEFRMTEWVKGRRVVVESIADGLETA---------DIVLLETD---LGAA----------VHHDLCM------------LLRRMKSGARAFTYLDLRKIWGGGEGG 510
            A   A++  AYG      G  T GH   +T ++  L E       YGE+LP G+ KALG   L       + ELG G GKVA+Q FL+  S                              L RV  VEL++AR+ + EAA  RLC+  P  F +     G  V +       +T+         ++ L   D   LGAA          V  ++C+            LLR  K+G+R  +Y  L  +     GG
Sbjct:    7 APVDAVLTTAYGDDAGLHGLSTAGHNAALTPAEVLLEEAERHDFQYGEVLPAGVRKALGEAHLDAQSGRSLVELGAGTGKVALQAFLECPS------------------------------LLRVTAVELAAARYRVGEAALLRLCERIPERFSLLAHAPGACVRISERPPAADTSAHQREGSSRELELSVGDVFELGAAARAALAEADVVFFEVCLPRTAEAAARGLALLRSTKAGSRVLSYEALEALEEEAAGG 232          
The following BLAST results are available for this feature:
BLAST of NO10G01350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25348.12.600e-17255.61topoisomerase 6 subunit b [Nannochloropsis gaditan... [more]
CBJ26512.11.400e-8539.33Topoisomerase 6 subunit B [Ectocarpus siliculosus][more]
XP_005774106.13.000e-1126.18hypothetical protein EMIHUDRAFT_435671 [Emiliania ... [more]
XP_005778389.15.300e-828.13hypothetical protein EMIHUDRAFT_460748, partial [E... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001004NSK001004Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01350.1NO10G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|423914gene_4081Nannochloropsis oceanica (N. oceanica CCMP1779)gene
TOP6Bgene5140Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01350.1NO10G01350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01350 ID=NO10G01350|Name=NO10G01350|organism=Nannochloropsis oceanica|type=gene|length=2942bp
ATGGCGAGCACGGGCTGGAGCGTCACGTCCTGGTTTTCGTCATGGACCAC
CTCCTCTTCATCTCCTACTTCCCAAGGCGGCGCCAGCCGCAGCATCAGCC
GCAGCCGCAAGGACAAACATTGCCATACTTACCAGTCTCATCAGCACCAC
CCGCCTTGCAGCTTCCTTGACAGCAGTGGAGCCGATGGGAGGGGCAACAG
CAGCGGCAGCAGCAACAGCAGGAGTGGGCTACATAGCAGTGGGCCACACA
GCCCTTACAAGCAGCACCCGCAGCCTCGACATGGCAGCCGAAAGATTTTG
TGTCGCTATGGCATGGGCTGCACGCATGTGCTTGACCCCATCCATGCAGA
ACGATTTTGGCACCCACCCGTCCCTGGGGAGGGGTTGCCATTGGCTACCT
ATGAAGGAAAAAATGGGGGTTACGCGGCCGAGGCGAAGGGTGGGGATTAT
CACTTGATGCTTATGGAAGGAGGGGGCTCGGCCTCCTTTCCGTGCCATGA
ATGTGGTTTATTCTTTGAAGAATTAGGAGAGTTAAGGCTTCATTTGCAGA
GTAAGACCGCTTGGTCGAATCTGAGTCTGGTGGGATGTAGGGTTAGTTGC
TTGATGGACAGTAAAGAGTGGCAAGAAGGGCTCGTAGTTGAGTACCTAGA
GGCAACGGGGAAGCATCGCGTGGTCTTTGAGCACATGGGCCAATCAAGGT
GGATCTCCATGCTACGCTCCGCCTTTTTTATAGTCCGTCGTCGGCCCCCT
TTACCCTCCTCCGCTGAAAGCAAAGACCCTTTCCCTTCCCCTTCCCCTCA
CAACCTCTCCTCCTCCCTCCCTCCCTCCACCTGGACGTACACCGAAGACC
TCTCCCTCGATTACGCACGCGCACAAGCGATAATGCACGAGGCTTATGGC
TACAAGATCCAAGAAACGGGCCATAAAACCCAAGGCCACCTGTGTGTCAC
TGACTCCGACCGTGCCCTCGCCGAGGATGCGCACTCCTCGCTCTTGTACG
GCGAGCTCCTGCCACGTGGCATAAATAAAGCACTGGGTGCCTTGCGACTA
CGAGGAGCAGAGGCAGCAGTCGTCTACGAGCTAGGGATGGGTATAGGGAA
AGTAGCTATGCAGATCTTCCTCCAATTTTCCTCCACATCAGAAGGAGGGG
AGGGGAGGGGGAGCGAGCTCAGTCCTGAGGAACCGGGGAGGGAGGGAGGG
AGGACGAGGAAGAGAAAGACAAGGTTAAGGAGGGTGTATGGGGTAGAGTT
GTCGTCGGCGCGCTTTGTGATGGCGGAGGCGGCAGCGCATCGCTTGTGTA
AGGAACGGCCGGGGGAGTTTCGAATGACGGAATGGGTGAAGGGGAGGAGG
GTGGTGGTGGAGTCCATAGCTGATgtaggaagggggggagagaaggggca
gtgcttgagatggaggtggggaatttactcgaggtccagGGGCTGGAGAC
TGCTGATATTGTCTTGCTGGAGACGGATTTGGGGGCAGCGGTGCACCATG
ATTTGTGCATGCTGTTGAGGCGGATGAAGAGTGGGGCGAGGGCGTTCACT
TATTTGGATCTGAGGAAAATTTGGGGGGGTGGAGAAGGAGGGGGGAAGGA
GGACAGGAGGCGGGGGGGCATTTTCCCGTTTCGGCAGTTGGAGATCAACC
GGGTGGTGAGTGACAGGTACGCCACGAGCTGGAGTGTCAATAGAGGGCAT
CATTTCTACTTGTGGATGAAGGTGTTGGAGTCTGGTAATGACGACCTGAT
TGTTCCGGAAGGACACCCGGAGCCGAGTGAATGGGTGCCAGATGCCGGGT
ATGGAGGTGTGGGGGAGAGAGGGAGGGAGGGAGAGAGGCTGCAATTTGAG
TATTTACGGCGGCGGCCCCAGCAACAGCAGCGGGGGTTACAGGGGAGGGA
GCATGATCGTCGATGGCAACGACGGCCGACTGCTGGGTATCAATATTGGT
GTCGACAGCATTCTACGCCCTCTTACTCGTCTTATTCTCCCTCAAGGGAG
GATGAGGGAGGAGAAAAAGGAGGAGGAGGAGGAAGGGGAGGGAGGAGCAG
TAGTGCAGAGAGGCCAGTCTTATCGAGCTGGGGGAAGATGATGAAGAGGC
TGACGGGGGCGGGAGGGGGCGGGGGAGGAAATGGAGGGGGGAGCTCGCCG
CTGTCGCCGGATTTGGTTTCCCCGCGGCGGTGACGAGGACGTGGAGGAGA
AGGTGCAGGAGTGACGGAGGAGGAGGAGGAGGAGGAGAGAGAGTAAACGA
AAGGTAGTGCGAAGGTGCGTGTGAAGACTAAACTAATCACGCGATGAGCA
CAAGGCAGACAATATGGGGTTCTAACATTCGTGGGAGCCCGCCAGATTCG
CCAATTCGGTCGGCCAGGTCTGTTTGGGGCCATGGTGGTTTGTCAGACCC
CCCGCGTATCCCACGAGGCTCTACATCCATAGGAAAAGGCATCACTAGAA
AAAGACGATTGCTCGAAAATGTACGTTGGCGGAAAGCAAGTACCTGGTCA
TTTCTTCATCTCGGGTAGACGTAGAAGGGGAGGATCATGTCGTGGCCCTT
CAGGTCGAGGAAGCAAAAGAGAAGAAATGAATAATAAAAAGGAGGGGGGC
AGCAAAGGAGTTAGAATGCTAACGACTTTTTATGGGCAGAGTGTAGGTGT
CATCTCCGTGTTTCCTCCACCATCCTTTCGTCCATGTCAAATAGGTGACA
AATTATAATTTTATATGTCTTAATATAAGGCATTCATCTCGGCCCTTGTC
CCTTGCCTTCGCAGTAGAAAGAAAGAGTATCATACAGGATATGCTTAGCG
TACAGGGAGATACAGATGAGGCCCAGAGGAGAAGAGGGAAGGGAAGATGA
AAATGGGGAATAAGCTAGAGGCGGCTTCAGCAAGACAATGCATCACAGTC
TTTCAAGAATCAAAACAAAGCATGACACATGTAACAACGACG
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protein sequence of NO10G01350.1

>NO10G01350.1-protein ID=NO10G01350.1-protein|Name=NO10G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=706bp
MASTGWSVTSWFSSWTTSSSSPTSQGGASRSISRSRKDKHCHTYQSHQHH
PPCSFLDSSGADGRGNSSGSSNSRSGLHSSGPHSPYKQHPQPRHGSRKIL
CRYGMGCTHVLDPIHAERFWHPPVPGEGLPLATYEGKNGGYAAEAKGGDY
HLMLMEGGGSASFPCHECGLFFEELGELRLHLQSKTAWSNLSLVGCRVSC
LMDSKEWQEGLVVEYLEATGKHRVVFEHMGQSRWISMLRSAFFIVRRRPP
LPSSAESKDPFPSPSPHNLSSSLPPSTWTYTEDLSLDYARAQAIMHEAYG
YKIQETGHKTQGHLCVTDSDRALAEDAHSSLLYGELLPRGINKALGALRL
RGAEAAVVYELGMGIGKVAMQIFLQFSSTSEGGEGRGSELSPEEPGREGG
RTRKRKTRLRRVYGVELSSARFVMAEAAAHRLCKERPGEFRMTEWVKGRR
VVVESIADGLETADIVLLETDLGAAVHHDLCMLLRRMKSGARAFTYLDLR
KIWGGGEGGGKEDRRRGGIFPFRQLEINRVVSDRYATSWSVNRGHHFYLW
MKVLESGNDDLIVPEGHPEPSEWVPDAGYGGVGERGREGERLQFEYLRRR
PQQQQRGLQGREHDRRWQRRPTAGYQYWCRQHSTPSYSSYSPSREDEGGE
KGGGGGRGGRSSSAERPVLSSWGKMMKRLTGAGGGGGGNGGGSSPLSPDL
VSPRR*
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Synonyms
Publications