NO10G01320, NO10G01320 (gene) Nannochloropsis oceanica

Overview
NameNO10G01320
Unique NameNO10G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5514
Alignment locationchr10:386615..392128 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription factor iiic-gamma subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:386615..392128 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0001004RNA polymerase III transcription regulator recruiting activity
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Biological Process
TermDefinition
GO:0070898RNA polymerase III preinitiation complex assembly
GO:0006383transcription by RNA polymerase III
Homology
[Close]
BLAST of NO10G01320 vs. NCBI_GenBank
Match: EWM25349.1 (transcription factor iiic-gamma subunit [Nannochloropsis gaditana])

HSP 1 Score: 994.6 bits (2570), Expect = 3.300e-286
Identity = 594/1085 (54.75%), Postives = 689/1085 (63.50%), Query Frame = 0 
Query:  401 MRAEYREALRLLNEVIRQAPTVPDPYQMMGQIYEDQGELQKAAEINLVGGQFGPKDAALWKKTGQMFLELGPDFYLKAQYCFGRAIKLNRKDVEAIADRAHVQSLWGKVDKAIAGYEAILRLSPPQPEQFLLRLAEDCLREGRFWEKGMGALSEVLCRVMGALFVQKQIGFLPIRPKAERYVPNRKMEVGYEASSVLVRHLMGLKRYGDAASVVQALHLFIAKLRERQTRFDVESEKQQELALPLDLVIRYGICQLHLDKLASALQSFAALRQMETSGGAGQGG-----------QGEVVELLGEVAMAYMDTGKYFRALEILRRLDGSKSXXXXXXXXXXXXXXXXGLSEKARIRVKLQMARSYLALNQFKGAATTLAQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMYGDVQREVVVLQATTARGLKHRPTMLSCLSRLTKELENLLAHHRQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSEHHLLIGASSKPAPAKKRGRP-PFRPPLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMLRRVDPEVTELEMFLEYGLLCREVGRHEDSTSVILALVELAVFQSKSDFRRSRKNKGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALTKKRAAAPAANATATAPVVSIPGQGG------------LSTTAASATSLPTRNSHQMDIPLLLPRPWDQTTFQSALQKHLHSHFARTEIVSRLGEHKLFLAARSLIRACIDTHGMIKEAGSISRTLVQRKHLLTEDHARELHEYTLLHAVNEDDYSSAIKSSIVSLSSHPTCLERGNALNRLVRKASRADANRAVIRRMAHKTPHSLPLALLSGNAFAISRNYQMALDKFLGAHRLAPTEPLVTLAAGALLMRVLSHRKLVDRHGCLVKCLGFLDKYVQLRREQGVEEEVLKEEGREGGVPPAVT--------------VAAAGKAMEQEVVFNMGRAFHQAGLLHMAVPFYQDALKMFDAHGELWKRGLGDKGHVTREAAWNLVVIYTGSKNREMARGLVERYLRV 1448
            MRAEYREALRLLNEV+RQAPTVPDPYQ MGQIYEDQGE+QKAAEINLVG QFGPKDA LWKKTGQMFLELG  FYLKAQYCFGRAIKL+R+DVEAIADRAHVQSLWG+VDKA+ GYEA+LRL+P QPEQFLLRLAEDCLRE RFWEKG+ ALSEVLCRVMGALFV KQI FLP++  A R+VP+RKME  YEA+S L RHLMGLKRY DAA+VVQALHLFIAKLRER TRF  ESE+QQ+LALP+DLV+R+GICQL+LDKL SALQ F+ALRQ +++     GG           QGEV  LL EVA A+MDTGK+FRALEILRRLD   S                 L    R+RVKLQMAR  +ALNQ  GAA+ L QI                                               +   V+REVVVLQA TARGLK   +M +CL+R  +EL  +    +                                EH    G     A +++ G P P RP                                         XXXX  E+   VD   TE E+FLEYGLLCR +GR +D  SV+L LVE+AVFQSKSDFRRSR+N+GAV                                             A            +  GQG              S  +   +S    +  Q +I  LLPR W +T FQ AL++HL  H +R E+++ LGE K++ AAR+LI+AC+++   ++EAGS++R LVQRKHLLTE+H RELHEY L HAVNEDDYSSAIKS IVSLS+ PT +ERGNALNRLVRKA+RADANRAVIRRMAHKTP SLPLALLSGNAFA+SRNYQMALDKFLGA+R+AP+EPLVTLAA ALLMRVLSHRKLV RHGCLVKCL FL++Y +LR  QGVEE+VLK E  +GG                    V  A +A+EQEVV+NMGRAFHQAGLLHMAVPFYQDAL +FD + E   R +  KGHVTREAAWNLV IY   + RE+AR +V RYLR+
Sbjct:    1 MRAEYREALRLLNEVVRQAPTVPDPYQTMGQIYEDQGEIQKAAEINLVGCQFGPKDARLWKKTGQMFLELGRPFYLKAQYCFGRAIKLDRQDVEAIADRAHVQSLWGRVDKAVLGYEAVLRLNPSQPEQFLLRLAEDCLREARFWEKGLEALSEVLCRVMGALFVAKQIKFLPVKAAAARHVPSRKMEAAYEAASTLCRHLMGLKRYADAAAVVQALHLFIAKLRERPTRFAEESEEQQQLALPVDLVVRFGICQLYLDKLTSALQCFSALRQADSASENSSGGGNLAXXXXXXXQGEVAGLLEEVAQAFMDTGKFFRALEILRRLDRGGSAGAGIGQRRAETT----LPRPGRLRVKLQMARCLVALNQLTGAASVLDQIEGVHGEGTSGKGLGGAKGTTRGGREGTKG------------------LRAPVRREVVVLQAATARGLKEPASMAACLARTARELAEICEEGQGKEAGAEEGAEGDV------------------EHGGGTGDVPGTASSREGGPPGPSRP--------CARLVEGGGADTGGTTSVEGIDVTGQRELEGERXXXXEGEVTCSVDARTTEFELFLEYGLLCRALGRDQDFFSVVLTLVEMAVFQSKSDFRRSRRNRGAVEEEEADWEGERQPVEGGEVNEGRQGGKISERDQVEGERRRGPIETAGXXXXXXXXXDKADAGQGAHEGGSLLAHAQDSSALSGPVSSKSPPHQSQSEIAELLPRTWPRTPFQVALERHLKVHASRVEVLTWLGEPKVYEAARALIQACVES-ARVREAGSLARVLVQRKHLLTEEHGRELHEYALSHAVNEDDYSSAIKSCIVSLSALPTSIERGNALNRLVRKATRADANRAVIRRMAHKTPESLPLALLSGNAFALSRNYQMALDKFLGAYRMAPSEPLVTLAAAALLMRVLSHRKLVARHGCLVKCLAFLEQYARLRLVQGVEEDVLKREAGDGGGMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQE-ELRTVDGKGHVTREAAWNLVCIYKEGECRELARLVVGRYLRM 1035
[Close]
BLAST of NO10G01320 vs. NCBI_GenBank
Match: XP_005989558.1 (PREDICTED: general transcription factor 3C polypeptide 3 isoform X3 [Latimeria chalumnae])

HSP 1 Score: 119.4 bits (298), Expect = 9.200e-23
Identity = 86/341 (25.22%), Postives = 150/341 (43.99%), Query Frame = 0 
Query:  385 LPESLSRVYGEAQRHYMRAEYREALRLLNEVIRQAPTVPDPYQMMGQIYEDQGELQKAAEINLVGGQFGPKDAALWKKTGQMFLELGPDFYLKAQYCFGRAIKLNRKDVEAIADRAHVQSLWGKVDKAIAGYEAILRLSPPQPEQFLLRLAEDCLR---EGRFWEKGMGALSEVLCRVMGALFVQKQIGFLPIRPKAERYVPNRKMEVGYEASSVLVRHLMGLKRYGDAASVVQALHLFIAKLRERQTRFDVESEKQQEL-------ALPLDLVIRYGICQLHLDKLASALQSFAALRQMETSGGAGQGGQGEVVELLGEVAMAYMDTGKYFRALEILRRL 716
            LP +L  + GEA   + R E  +A+ +  E+IRQAP   +P+  +  IYEDQG+++K+ +  L+     P D   W K  +M LE   D   +A +C+ +AIK +  +V  + +R+++    G+   A+ GY  IL L PP   +  ++LA D  +   E       +G + E L +  G + V+       I   AE Y+ N                    K+Y  A  ++      + +    +       EK  E+       ++P+D+ ++  +C +HL  L         L +             E+ +L  +VA A+++ G+Y  AL +L  L
Sbjct:  147 LPRALRGLMGEANIRFARGEKEDAITMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFGLIAAHLNPSDIEEWLKLAEMSLE--QDNIKQAIFCYSKAIKYDPTNVHYLWERSNLYEQVGEHKLAMDGYRRILNLLPPSEGEHFMQLARDMAKSYYEVNDLSSAIGVMEEALNKHQGLVAVE------DINMAAELYISN--------------------KQYDKALEIITQFSEIVLERDSAEQETSEAKEKGGEVYKCQIPESVPVDIRVKLMVCLIHLHILRPLDSLLTGLLEQNPE---------EMGDLYLDVAEAFLEIGEYNSALPLLSAL 450
[Close]
BLAST of NO10G01320 vs. NCBI_GenBank
Match: XP_005989560.1 (PREDICTED: general transcription factor 3C polypeptide 3 isoform X4 [Latimeria chalumnae])

HSP 1 Score: 119.4 bits (298), Expect = 9.200e-23
Identity = 86/341 (25.22%), Postives = 150/341 (43.99%), Query Frame = 0 
Query:  385 LPESLSRVYGEAQRHYMRAEYREALRLLNEVIRQAPTVPDPYQMMGQIYEDQGELQKAAEINLVGGQFGPKDAALWKKTGQMFLELGPDFYLKAQYCFGRAIKLNRKDVEAIADRAHVQSLWGKVDKAIAGYEAILRLSPPQPEQFLLRLAEDCLR---EGRFWEKGMGALSEVLCRVMGALFVQKQIGFLPIRPKAERYVPNRKMEVGYEASSVLVRHLMGLKRYGDAASVVQALHLFIAKLRERQTRFDVESEKQQEL-------ALPLDLVIRYGICQLHLDKLASALQSFAALRQMETSGGAGQGGQGEVVELLGEVAMAYMDTGKYFRALEILRRL 716
            LP +L  + GEA   + R E  +A+ +  E+IRQAP   +P+  +  IYEDQG+++K+ +  L+     P D   W K  +M LE   D   +A +C+ +AIK +  +V  + +R+++    G+   A+ GY  IL L PP   +  ++LA D  +   E       +G + E L +  G + V+       I   AE Y+ N                    K+Y  A  ++      + +    +       EK  E+       ++P+D+ ++  +C +HL  L         L +             E+ +L  +VA A+++ G+Y  AL +L  L
Sbjct:  147 LPRALRGLMGEANIRFARGEKEDAITMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFGLIAAHLNPSDIEEWLKLAEMSLE--QDNIKQAIFCYSKAIKYDPTNVHYLWERSNLYEQVGEHKLAMDGYRRILNLLPPSEGEHFMQLARDMAKSYYEVNDLSSAIGVMEEALNKHQGLVAVE------DINMAAELYISN--------------------KQYDKALEIITQFSEIVLERDSAEQETSEAKEKGGEVYKCQIPESVPVDIRVKLMVCLIHLHILRPLDSLLTGLLEQNPE---------EMGDLYLDVAEAFLEIGEYNSALPLLSAL 450
[Close]
BLAST of NO10G01320 vs. NCBI_GenBank
Match: XP_014340255.1 (PREDICTED: general transcription factor 3C polypeptide 3 isoform X1 [Latimeria chalumnae])

HSP 1 Score: 119.4 bits (298), Expect = 9.200e-23
Identity = 86/341 (25.22%), Postives = 150/341 (43.99%), Query Frame = 0 
Query:  385 LPESLSRVYGEAQRHYMRAEYREALRLLNEVIRQAPTVPDPYQMMGQIYEDQGELQKAAEINLVGGQFGPKDAALWKKTGQMFLELGPDFYLKAQYCFGRAIKLNRKDVEAIADRAHVQSLWGKVDKAIAGYEAILRLSPPQPEQFLLRLAEDCLR---EGRFWEKGMGALSEVLCRVMGALFVQKQIGFLPIRPKAERYVPNRKMEVGYEASSVLVRHLMGLKRYGDAASVVQALHLFIAKLRERQTRFDVESEKQQEL-------ALPLDLVIRYGICQLHLDKLASALQSFAALRQMETSGGAGQGGQGEVVELLGEVAMAYMDTGKYFRALEILRRL 716
            LP +L  + GEA   + R E  +A+ +  E+IRQAP   +P+  +  IYEDQG+++K+ +  L+     P D   W K  +M LE   D   +A +C+ +AIK +  +V  + +R+++    G+   A+ GY  IL L PP   +  ++LA D  +   E       +G + E L +  G + V+       I   AE Y+ N                    K+Y  A  ++      + +    +       EK  E+       ++P+D+ ++  +C +HL  L         L +             E+ +L  +VA A+++ G+Y  AL +L  L
Sbjct:  147 LPRALRGLMGEANIRFARGEKEDAITMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFGLIAAHLNPSDIEEWLKLAEMSLE--QDNIKQAIFCYSKAIKYDPTNVHYLWERSNLYEQVGEHKLAMDGYRRILNLLPPSEGEHFMQLARDMAKSYYEVNDLSSAIGVMEEALNKHQGLVAVE------DINMAAELYISN--------------------KQYDKALEIITQFSEIVLERDSAEQETSEAKEKGGEVYKCQIPESVPVDIRVKLMVCLIHLHILRPLDSLLTGLLEQNPE---------EMGDLYLDVAEAFLEIGEYNSALPLLSAL 450
[Close]
BLAST of NO10G01320 vs. NCBI_GenBank
Match: XP_014340256.1 (PREDICTED: general transcription factor 3C polypeptide 3 isoform X2 [Latimeria chalumnae])

HSP 1 Score: 119.4 bits (298), Expect = 9.200e-23
Identity = 86/341 (25.22%), Postives = 150/341 (43.99%), Query Frame = 0 
Query:  385 LPESLSRVYGEAQRHYMRAEYREALRLLNEVIRQAPTVPDPYQMMGQIYEDQGELQKAAEINLVGGQFGPKDAALWKKTGQMFLELGPDFYLKAQYCFGRAIKLNRKDVEAIADRAHVQSLWGKVDKAIAGYEAILRLSPPQPEQFLLRLAEDCLR---EGRFWEKGMGALSEVLCRVMGALFVQKQIGFLPIRPKAERYVPNRKMEVGYEASSVLVRHLMGLKRYGDAASVVQALHLFIAKLRERQTRFDVESEKQQEL-------ALPLDLVIRYGICQLHLDKLASALQSFAALRQMETSGGAGQGGQGEVVELLGEVAMAYMDTGKYFRALEILRRL 716
            LP +L  + GEA   + R E  +A+ +  E+IRQAP   +P+  +  IYEDQG+++K+ +  L+     P D   W K  +M LE   D   +A +C+ +AIK +  +V  + +R+++    G+   A+ GY  IL L PP   +  ++LA D  +   E       +G + E L +  G + V+       I   AE Y+ N                    K+Y  A  ++      + +    +       EK  E+       ++P+D+ ++  +C +HL  L         L +             E+ +L  +VA A+++ G+Y  AL +L  L
Sbjct:  147 LPRALRGLMGEANIRFARGEKEDAITMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFGLIAAHLNPSDIEEWLKLAEMSLE--QDNIKQAIFCYSKAIKYDPTNVHYLWERSNLYEQVGEHKLAMDGYRRILNLLPPSEGEHFMQLARDMAKSYYEVNDLSSAIGVMEEALNKHQGLVAVE------DINMAAELYISN--------------------KQYDKALEIITQFSEIVLERDSAEQETSEAKEKGGEVYKCQIPESVPVDIRVKLMVCLIHLHILRPLDSLLTGLLEQNPE---------EMGDLYLDVAEAFLEIGEYNSALPLLSAL 450
[Close]
BLAST of NO10G01320 vs. NCBI_GenBank
Match: XP_018432472.1 (PREDICTED: general transcription factor 3C polypeptide 3 [Nanorana parkeri])

HSP 1 Score: 116.7 bits (291), Expect = 6.000e-22
Identity = 83/332 (25.00%), Postives = 151/332 (45.48%), Query Frame = 0 
Query:  385 LPESLSRVYGEAQRHYMRAEYREALRLLNEVIRQAPTVPDPYQMMGQIYEDQGELQKAAEINLVGGQFGPKDAALWKKTGQMFLELGPDFYLKAQYCFGRAIKLNRKDVEAIADRAHVQSLWGKVDKAIAGYEAILRLSPPQPEQFLLRLAEDCLREGRFWEKGMGALSEVLCRVMGALFVQKQIGFLPIRPKAERYVPNRKMEVGYEASSVLVRHLMGLK-RYGDAASVVQALHLFIAKLRERQTRFDVESEKQQELALPLDLVIRYGICQLHLDKLASALQSFAALRQMETSGGAGQGGQGEVVELLGEVAMAYMDTGKYFRALEILRRL 716
            LP +L  + GEA   + R E  EA+ +  E+IRQAP   +P+  +  IYEDQG+++K+ +  L+     P D   W +  +M LE   D   +A +C+ +A+K N  +V  + +R+ +    G+   A+ GY  IL L  P   +  ++LA D  +   ++E    A + V+     A   Q  +    +   AE Y+ N +    Y+ +  ++    G+     +  S  +   + +  + E                LP+D+ ++  +C +HL+ L +      +L +             EV +L  +VA A+++ G+Y  AL +L  L
Sbjct:   97 LPRALRGLMGEANIRFARGEREEAIMMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLE--QDNIKQAIFCYSKALKYNPTNVRYLWERSSLYEQMGEHKLAMDGYRRILNLLSPSDGERFMQLARDMAKS--YYETNDVASAIVIIEEAFAKH-QNLVAIEDVNIAAELYISNNQ----YDKALEVITQFSGITLNKKETTSTEEGSEIVMCHVPE---------------GLPIDITVKMMLCLIHLNILETVGPMLTSLMEQNPE---------EVGDLYLDVAEAFLEVGEYNSALPLLGAL 395
[Close]
BLAST of NO10G01320 vs. NCBI_GenBank
Match: PIO40726.1 (hypothetical protein AB205_0032920 [Rana catesbeiana])

HSP 1 Score: 116.7 bits (291), Expect = 6.000e-22
Identity = 84/332 (25.30%), Postives = 151/332 (45.48%), Query Frame = 0 
Query:  385 LPESLSRVYGEAQRHYMRAEYREALRLLNEVIRQAPTVPDPYQMMGQIYEDQGELQKAAEINLVGGQFGPKDAALWKKTGQMFLELGPDFYLKAQYCFGRAIKLNRKDVEAIADRAHVQSLWGKVDKAIAGYEAILRLSPPQPEQFLLRLAEDCLREGRFWEKGMGALSEVLCRVMGALFVQKQIGFLPIRPKAERYVPNRKMEVGYEASSVLVRHLMGLK-RYGDAASVVQALHLFIAKLRERQTRFDVESEKQQELALPLDLVIRYGICQLHLDKLASALQSFAALRQMETSGGAGQGGQGEVVELLGEVAMAYMDTGKYFRALEILRRL 716
            LP +L  + GEA   + R E  EA+ +  E+IRQAP   +P+  +  IYEDQG+++K+ +  L+     P D   W +  +M LE   D   +A +C+ +A+K N  +V  + +R+ +    G+   A+ GY  IL L  P   +  ++LA D  +   ++E    A + V+     +   Q  +    +   AE Y+ N +    Y+ +  ++    G+     + AS   +  + I ++ E                +P+D+ ++  +C +HL+ L        +L +             EV +L  +VA  Y+D G+Y  AL +L  L
Sbjct:   10 LPRALRGLMGEANIRFARGEREEAIMMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLE--QDNIKQAIFCYSKALKYNPTNVRYLWERSSLYEQVGEHKLAMDGYRRILNLLSPSDGERFMQLARDMAKS--YYETNDVASAIVIIEEAFSKH-QNLVAIEDVNIAAELYISNNQ----YDKALEVITQFSGITLNKKETASPEDSSEIVICRVPE---------------GVPIDITVKMMLCLIHLNILEPVGPMLTSLMEQNPE---------EVGDLYLDVAEGYIDIGEYNSALPLLSAL 308
[Close]
BLAST of NO10G01320 vs. NCBI_GenBank
Match: XP_002941839.2 (PREDICTED: general transcription factor 3C polypeptide 3 [Xenopus tropicalis] >OCA39693.1 hypothetical protein XENTR_v90007120mg [Xenopus tropicalis])

HSP 1 Score: 116.3 bits (290), Expect = 7.800e-22
Identity = 81/334 (24.25%), Postives = 149/334 (44.61%), Query Frame = 0 
Query:  385 LPESLSRVYGEAQRHYMRAEYREALRLLNEVIRQAPTVPDPYQMMGQIYEDQGELQKAAEINLVGGQFGPKDAALWKKTGQMFLELGPDFYLKAQYCFGRAIKLNRKDVEAIADRAHVQSLWGKVDKAIAGYEAILRLSPPQPEQFLLRLAEDCLR---EGRFWEKGMGALSEVLCRVMGALFVQKQIGFLPIRPKAERYVPNRKMEVGYEASSVLVRHLMGLKRYGDAASVVQALHLFIAKLRERQTRFDVESEKQQELALPLDLVIRYGICQLHLDKLASALQSFAALRQMETSGGAGQGGQGEVVELLGEVAMAYMDTGKYFRALEILRRL 716
            LP+ L  + GEA   + R E  EA+ +  E+IRQAP   +P+  +  IYEDQG+++K+ +  L+     P +   W +  +M LE   D   +A +C+G+A++ N  +V  + +R+ +    G+   A+ GY  IL L  P   +  ++LA D  +   E       +G + E L +       Q  +    +   AE Y+ N++    Y+ +  ++    G+        V+ +    +  + +                +P+D+ ++  +C +HL+ L         L +             EV +L  +VA A++D G+Y  AL +L  L
Sbjct:  143 LPKVLRGLMGEANIRFARGESEEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSNTEEWVRLAEMSLE--QDNIKQAIFCYGKALRYNPTNVRFLWERSSLYEQIGEHKLAMDGYRRILNLLSPTDGERFMQLARDMAKTYYETNDIASAIGTIEEALSK------HQNLVAIEDVNIAAELYLSNKQ----YDKALDVITQFSGITLSKSETDVLNSAESVVCHIPD---------------GVPIDITVKMMLCLIHLNILEPVYPLLTFLMEQNPE---------EVGDLYLDVAEAFLDVGEYNSALPLLSAL 440
[Close]
BLAST of NO10G01320 vs. NCBI_GenBank
Match: XP_018110397.1 (PREDICTED: general transcription factor 3C polypeptide 3-like [Xenopus laevis] >OCT86295.1 hypothetical protein XELAEV_18019987mg [Xenopus laevis])

HSP 1 Score: 116.3 bits (290), Expect = 7.800e-22
Identity = 79/334 (23.65%), Postives = 149/334 (44.61%), Query Frame = 0 
Query:  385 LPESLSRVYGEAQRHYMRAEYREALRLLNEVIRQAPTVPDPYQMMGQIYEDQGELQKAAEINLVGGQFGPKDAALWKKTGQMFLELGPDFYLKAQYCFGRAIKLNRKDVEAIADRAHVQSLWGKVDKAIAGYEAILRLSPPQPEQFLLRLAEDCLR---EGRFWEKGMGALSEVLCRVMGALFVQKQIGFLPIRPKAERYVPNRKMEVGYEASSVLVRHLMGLKRYGDAASVVQALHLFIAKLRERQTRFDVESEKQQELALPLDLVIRYGICQLHLDKLASALQSFAALRQMETSGGAGQGGQGEVVELLGEVAMAYMDTGKYFRALEILRRL 716
            LP +L  + GEA   + R E  +A+ +  E+IRQAP   +P+  +  IYEDQG+++K+ +  L+     P +   W +  +M LE   D   +A +C+G+A+K N  ++  + +R+ +    G+   A+ GY  IL L  P   +  ++LA D  +   E       +G + E L +       Q  +    +   AE Y+ N++    Y+ +  ++    G+        ++ +    +  + +                +P+D+ ++  +C +HL+ L         L +             EV +L  +VA A++D G+Y  AL +L  L
Sbjct:  147 LPRALRGLMGEANIRFARGESEDAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSNTEEWVRLAEMSLE--QDNIKQAIFCYGKALKYNPTNIRYLWERSSLYEQIGEHKLAMDGYRRILNLLSPSDGERFMQLARDMAKSYYETNDIASAIGTIEEALAK------HQNLVAIEDVNIAAELYISNKQ----YDKALDVITQFSGITLSKSDTGLLDSAESVVCNMPD---------------GVPIDISVKMMLCLIHLNILEPVYPLLTFLMEQNPE---------EVGDLYLDVAEAFLDAGEYNSALPLLSAL 444
[Close]
BLAST of NO10G01320 vs. NCBI_GenBank
Match: XP_005853454.1 (transcription factor iiic-gamma subunit, partial [Nannochloropsis gaditana CCMP526] >XP_005855356.1 transcription factor iiic-gamma subunit, partial [Nannochloropsis gaditana CCMP526] >EKU21002.1 transcription factor iiic-gamma subunit, partial [Nannochloropsis gaditana CCMP526] >EKU22906.1 transcription factor iiic-gamma subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.0 bits (284), Expect = 3.900e-21
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 0 
Query: 1360 VAAAGKAMEQEVVFNMGRAFHQAGLLHMAVPFYQDALKMFDAHGELWKRGLGDKGHVTREAAWNLVVIYTGSKNREMARGLVERYLRV 1448
            V  A +A+EQEVV+NMGRAFHQAGLLHMAVPFYQDAL +FD + E   R +  KGHVTREAAWNLV IY   + RE+AR +V RYLR+
Sbjct:   29 VKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQE-ELRTVDGKGHVTREAAWNLVCIYREGECRELARLVVGRYLRM 115
The following BLAST results are available for this feature:
BLAST of NO10G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25349.13.300e-28654.75transcription factor iiic-gamma subunit [Nannochlo... [more]
XP_005989558.19.200e-2325.22PREDICTED: general transcription factor 3C polypep... [more]
XP_005989560.19.200e-2325.22PREDICTED: general transcription factor 3C polypep... [more]
XP_014340255.19.200e-2325.22PREDICTED: general transcription factor 3C polypep... [more]
XP_014340256.19.200e-2325.22PREDICTED: general transcription factor 3C polypep... [more]
XP_018432472.16.000e-2225.00PREDICTED: general transcription factor 3C polypep... [more]
PIO40726.16.000e-2225.30hypothetical protein AB205_0032920 [Rana catesbeia... [more]
XP_002941839.27.800e-2224.25PREDICTED: general transcription factor 3C polypep... [more]
XP_018110397.17.800e-2223.65PREDICTED: general transcription factor 3C polypep... [more]
XP_005853454.13.900e-2167.05transcription factor iiic-gamma subunit, partial [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001000NSK001000Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01320.1NO10G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526880gene_4084Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g120gene5143Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01320.1NO10G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01320 ID=NO10G01320|Name=NO10G01320|organism=Nannochloropsis oceanica|type=gene|length=5514bp
GGAAGGACGGGGACGGAGTGGCTGGGTGGGGTTGGGTTATGCACCAGGGG
AAAATTTAGGGGAAAACACGCAGGCCTCCGATGCGTCGAGCAAACGATGC
ATGCGACAGCCATGCACATGGCCGCGCGCGTGAGAAACAAGCAAGATTGG
AGCGTGACAACTCATGGTCTCTGCGATATGACAATAAGAACGACCCCATG
CACCAGTCAGAGTCGTCGCGCCCGCCCATTCTCGCCACGAAATAGCCACC
AAGGAGTGTTGTTACGGGCTGTGGGTGCGTGGCTTGTGGGTGTACAGTGT
GGTGGACACACACCGCGGCAGTGTCGAACACGAACAAAAAATTGGAAAAA
AGATGGCGAGGTTTTGGCTGCCTGAAGATGGGGAAATAAAAAGGATGATG
CCGTCCGCACGAGATCATGACGTACTCCGGGCCTGCCGTCGAGTGCATGT
GGTTGGAGGGTGTGCAGTGGATGGAAAAGTGGAGTGGGTCATGTCGTGGT
GGATTGTGCGTTTGCACGCCGCGGCGGCCGGAATGATGATGCGAGGCTTC
AAACAGCGATGCGTCATCATAAGACGCCAATTTCACACACACCTGAAGCC
ACATTACACACAAAGACACGCAGCCACCACAGCGGCACGTATAACGTTTT
CCCCACTCTGTACTGAGGCACGCCATTCTCATCTCCGCTGTGTTTTTCAA
GCGAAACGCGATCGTCTGACGCTCACCCCTCCCCTTGCTACCAGGGCCTT
TCCTTCCTACAGAACAGCACCATGTCTGCTACCAGGCGGAGTTCCCGGCT
CGCAGACCGTCTCACAGTCGCGGTGCCACAATCCGCGACAGCCACCAAGG
AAGAGGGCGAGGAGGAAATGGAGGTGGGCCTCCAGGGAAAAAAAGCGGAA
AAGTCTAGCATAATCATGTGCAAGAGCCACAGCAGCAAAGCTGGGACAAG
TGCTGCAGTCGAGGACAATTATCATTCCCAAAATGCCGCAAATAATGATA
TTGAAGATAATGGGGAGGAGGAGGAGGAGGAGAACAATGACGATGGTGAA
TATGAGGAAGAGGAGGAGGAGATGGAGGAGGAAGAAGAGGAGGAGGAGGA
AATGGAGGAGGAAGAGGAGGAGGAAGAAGATGATGATGATGAAGATGACG
ACGACGACATGGACTATGAGCGAGGCGAGGGCATGGAAGATGAGGGGGAA
GTGGAGGATTTCGGGTCCTTCCAAATGGATGACGAGGAAGAGGAGGGAGG
AGGCAGCAGTACTGCGACTCTTGCAAGCATCCCCGCGGCCGGCATGACAG
GAGCAGCTGCTACGAGCAAGAGGTCTGCTGCCACGACCACCATATACACC
ACCTCGATCATAACTGGTGAAGCTGCTCCCTCTGCTTCCGCCATCACTGA
TGCCGCCTCACAAAAAAAGGGCATGCAAGTTAACCAGACCCGCCAAGCGA
ATGCGCTCGTATCCCTTGTGGCGGCTGCAGAGGAGACACGAGACGAGAGA
GTAGGAGGGACAGGAGGAAGAGAAGCTGGAAGCGGAAGGGGGGCCAGAAG
TGGAAGAGAAGGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGACGCAGCCAGCTGCAGTTTAGCCTATGCAAAGATG
ACGAGGGAGTATGAAGATATGAATGATATGGGGTACCTGATGATAGGTGG
AGGAGGGGGGTGGGGAGGAGGAGGAGGGATGAGTATGCCTTTCATCGATC
ACGTGGCAGAGCTCCAAAGGTTGACGGCCCGTCAAAGGAAGCGGAGCAAG
AAGCGTCAGCGTCGGGAGGGAGGAGGAGGACAAAGAGCAGGAAGAGGAAG
TGGTGAGCCAGCCTCCAAAGACGGTATGCCTGCCAAAAAGAAGAAAAAAA
AAGGCGCGACAGGCGGGAGAATCCTGCCGGAGAGTCTCAGTCGGGTGTAC
GGGGAAGCGCAGAGGCATTACATGCGAGCCGAGTACAGGGAGGCGTTGAG
GTTATTGAACGAGGTGATACGACAGGCGCCGACGGTGCCCGACCCGTACC
AGATGATGGGGCAGgtaacgacggcagagagggaggagggggaagggctg
gaggaagggattctgcacatagtctaccggcatgcctgactcacacatga
catgcaccttatcccttcgccccatttctcccttgctccttccttccttc
cctccctccctctcaccaatcagATCTACGAAGACCAAGGCGAATTACAA
AAGGCCGCGGAGATTAACCTTGTAGGGGGTCAATTCGGACCCAAGGACGC
CGCCCTGTGGAAAAAAACAGGACAGATGTTTCTCGAGCTCGGCCCCGACT
TTTATCTCAAGGCCCAATACTGCTTCGGTCGGGCCATCAAACTGAACCGT
AAAGACGTCGAGGCCATTGCGGACCGTGCGCACGTGCAGTCTCTGTGGGG
TAAGGTCGATAAGGCCATTGCGGGCTACGAGGCAATTTTACGCCTCTCAC
CCCCGCAGCCTGAGCAGTTTTTGTTGAGACTCGCCGAAGACTGCCTTCGG
GAGGGGAGATTTTGGGAGAAGGGGATGGGGGCGTTGAGTGAGGTGCTATG
TCGGGTGATGGGAGCGCTGTTTGTGCAGAAACAGATCGGGTTTCTGCCTA
TCAGGCCCAAGGCGGAGAGATATGTGCCGAACAGGAAGATGGAAGTAGGG
TATGAGGCGAGCTCGGTGTTGGTGAGGCATTTGATGGGTTTAAAGAGGTA
CGGGGATGCGGCGAGTGTCGTCCAGGCCCTGCATTTGTTCATTGCTAAGC
TGAGAGAGAGGCAGACGAGGTTTGACGTGGAGAGCGAGAAGCAGCAGGAG
CTGGCCTTGCCCCTGGATCTGGTGATCAGGTATGGGATATGTCAGTTGCA
CTTGGACAAGCTCGCTAGCGCCTTGCAATCCTTTGCGGCCTTGCGGCAAA
TGGAGACGAGCGGTGGTGCGGGGCAAGGGGGGCAAGGAGAGGTGGTGGAG
TTGTTGGGGGAAGTGGCGATGGCGTACATGGACACGGGGAAGTATTTCCG
TGCTTTGGAGATTTTGCGGAGGCTTGATGGGAGTAAGAGTGCCGGTGGTA
GTGGTGGTAGCAGCAGCAGCAGCAGCAGCAGGAGCTGTGGGTTGTCGGAG
AAAGCACGAATAAGAGTGAAACTTCAGATGGCGCGGTCGTATTTAGCCTT
GAATCAATTCAAAGGAGCTGCAACGACCTTGGCCCAAATCGAATCTATTT
GCTCGGTCGCCGCTACTGCTGCTGGTGCTGCAGGTGCTCCTGCTGCTACA
GCTGCTACTACCGCACCTATGTCTCTTGTTGCTCAAATGGCGCAAGGAGG
GGGGATGGAAGGGGGAGAGGGAGGAAGGCGTATGTACGGGGACGTGCAAC
GGGAGGTTGTGGTGCTGCAGGCGACGACGGCAAGAGGGCTGAAGCACCGT
CCGACCATGCTCTCCTGCCTATCTCGACTGACAAAAGAGTTGGAAAATCT
CCTCGCGCACCACCGACAGCTTCAGGAGCATCAACAGCAGGAGCAGGAAC
AAACGCAGGCGGAGGAAACAGGAAGGGGAGGGAGGGGAAGATGGGAAAAA
GAGAGTGTGTCGGAGCATCACTTGCTGATAGGCGCTTCATCCAAGCCGGC
GCCGGCGAAGAAACGAGGTCGTCCTCCCTTCCGCCCTCCCTTGATGACAA
CAGCCGAAGTTGAAAAGGAAGCTTCTGCCGCCGCTTCTACCGCTGCGGAA
GAGGAAGGGGAGAGAGGGAGGGAGGAACAGGCAGCACGTGGAGAAGGAAG
AGGAGGAGGAACAGAAGGAGAAGGGGAAGAGATGCTTAGAAGGGTTGATC
CAGAGGTGACTGAATTGGAAATGTTTTTGGAGTATGGGTTGTTGTGTAGG
GAGGTCGGAAGGCATGAAGACTCTACATCGGTCATTTTGGCATTGGTGGA
GCTGGCTGTCTTTCAGAGTAAGAGTGACTTTAGACGCAGTCGGAAGAATA
AGGGGGCGGTTGAGGAAGAGGAAGAAGAGGAGGAGGAGAAGATGGGGCGG
AGGGAAAGGGGGAGGGAGGGGGAGGACGGGTGGGAAGGGGTGGATGGAGG
GACAGGAGGAGGGACTGGCCAAGCCTTGACAAAAAAGCGTGCGGCCGCTC
CTGCTGCTAACGCTACGGCAACTGCTCCGGTGGTCTCTATCCCTGGACAA
GGAGGGCTCTCCACCACAGCAGCCTCCGCCACCTCCCTTCCAACCCGAAA
TTCGCATCAAATGGACATCCCTCTCTTGCTCCCTCGCCCCTGGGACCAGA
CCACTTTCCAATCCGCCCTCCAAAAGCACCTCCATTCTCACTTTGCCCGC
ACTGAAATCGTTTCTCGGCTTGGCGAACATAAGCTTTTCCTCGCAGCCCG
CTCCTTGATTCGTGCCTGCATCGACACCCACGGCATGATTAAAGAAGCTG
GTTCGATAAGCCGTACTCTCGTCCAGAGAAAACACCTCCTGACAGAAGAC
CACGCGCGAGAACTCCACGAGTACACCCTCCTCCACGCCGTCAACGAAGA
CGACTACTCCTCCGCCATCAAGTCCTCAATTGTCTCTCTCTCCTCCCACC
CCACATGCCTCGAACGGGGCAATGCCCTGAACCGGCTCGTCCGCAAGGCC
TCCCGGGCTGACGCCAATCGCGCCGTCATCCGACGCATGGCCCATAAGAC
CCCGCACTCTCTTCCTCTCGCCCTACTCTCGGGAAATGCCTTTGCGATCT
CACGAAATTACCAGATGGCATTGGACAAGTTCCTCGGGGCGCACAGGCTT
GCGCCAACAGAACCTTTGGTTACACTGGCGGCGGGGGCCTTGTTAATGCG
GGTGTTGAGTCATCGGAAGTTGGTGGATCGACACGGATGTTTGGTGAAAT
GTTTGGGATTTCTGGATAAATATGTGCAGTTAAGGAGGGAACAGGGGGTA
GAAGAAGAGGTGCTGAAAGAAGAAGGGAGGGAGGGCGGTGTACCTCCGGC
AGTTACGGTGGCTGCCGCTGGAAAGGCGATGGAGCAGGAAGTGGTGTTTA
ATATGGGGCGGGCGTTTCACCAGGCGGGATTATTGCACATGGCCGTGCCA
TTCTATCAGGATGCTTTAAAGATGTTCGATGCGCATGGGGAGTTGTGGAA
GAGGGGGTTGGGAGACAAGGGGCATGTCACCCGGGAGGCTGCCTGGAATC
TGGTGGTGATTTATACGGGTTCCAAGAATAGGGAAATGGCGCGAGGGTTG
GTGGAGAGGTACTTGCGGGTGTGAGATATGGTGCAGATGGAGGCGAGGGC
ATGTGAATATAAGATGTGTTCAAAAGCAGAACGATAACGACGAAGAAACA
TGGCTAGCAAATTAAGGGTCGAAGAAATGAAGGCCTGCCGCGATAAGTCT
CACGAAGCCAAGACAAAGATATGTGTCCCGCGCCCGCGGCAGATTCGGCA
AGACAGTTTGATTCCTAGCAAAAGCTGTGTATGATAGAAAAGAAAATGTT
CATCACTAAAGACT
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protein sequence of NO10G01320.1

>NO10G01320.1-protein ID=NO10G01320.1-protein|Name=NO10G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1448bp
MSATRRSSRLADRLTVAVPQSATATKEEGEEEMEVGLQGKKAEKSSIIMC
KSHSSKAGTSAAVEDNYHSQNAANNDIEDNGEEEEEENNDDGEYEEEEEE
MEEEEEEEEEMEEEEEEEEDDDDEDDDDDMDYERGEGMEDEGEVEDFGSF
QMDDEEEEGGGSSTATLASIPAAGMTGAAATSKRSAATTTIYTTSIITGE
AAPSASAITDAASQKKGMQVNQTRQANALVSLVAAAEETRDERVGGTGGR
EAGSGRGARSGREGRGRRRGGGGGGGGGGGGDAASCSLAYAKMTREYEDM
NDMGYLMIGGGGGWGGGGGMSMPFIDHVAELQRLTARQRKRSKKRQRREG
GGGQRAGRGSGEPASKDGMPAKKKKKKGATGGRILPESLSRVYGEAQRHY
MRAEYREALRLLNEVIRQAPTVPDPYQMMGQIYEDQGELQKAAEINLVGG
QFGPKDAALWKKTGQMFLELGPDFYLKAQYCFGRAIKLNRKDVEAIADRA
HVQSLWGKVDKAIAGYEAILRLSPPQPEQFLLRLAEDCLREGRFWEKGMG
ALSEVLCRVMGALFVQKQIGFLPIRPKAERYVPNRKMEVGYEASSVLVRH
LMGLKRYGDAASVVQALHLFIAKLRERQTRFDVESEKQQELALPLDLVIR
YGICQLHLDKLASALQSFAALRQMETSGGAGQGGQGEVVELLGEVAMAYM
DTGKYFRALEILRRLDGSKSAGGSGGSSSSSSSRSCGLSEKARIRVKLQM
ARSYLALNQFKGAATTLAQIESICSVAATAAGAAGAPAATAATTAPMSLV
AQMAQGGGMEGGEGGRRMYGDVQREVVVLQATTARGLKHRPTMLSCLSRL
TKELENLLAHHRQLQEHQQQEQEQTQAEETGRGGRGRWEKESVSEHHLLI
GASSKPAPAKKRGRPPFRPPLMTTAEVEKEASAAASTAAEEEGERGREEQ
AARGEGRGGGTEGEGEEMLRRVDPEVTELEMFLEYGLLCREVGRHEDSTS
VILALVELAVFQSKSDFRRSRKNKGAVEEEEEEEEEKMGRRERGREGEDG
WEGVDGGTGGGTGQALTKKRAAAPAANATATAPVVSIPGQGGLSTTAASA
TSLPTRNSHQMDIPLLLPRPWDQTTFQSALQKHLHSHFARTEIVSRLGEH
KLFLAARSLIRACIDTHGMIKEAGSISRTLVQRKHLLTEDHARELHEYTL
LHAVNEDDYSSAIKSSIVSLSSHPTCLERGNALNRLVRKASRADANRAVI
RRMAHKTPHSLPLALLSGNAFAISRNYQMALDKFLGAHRLAPTEPLVTLA
AGALLMRVLSHRKLVDRHGCLVKCLGFLDKYVQLRREQGVEEEVLKEEGR
EGGVPPAVTVAAAGKAMEQEVVFNMGRAFHQAGLLHMAVPFYQDALKMFD
AHGELWKRGLGDKGHVTREAAWNLVVIYTGSKNREMARGLVERYLRV*
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Synonyms
Publications