NO10G01250, NO10G01250 (gene) Nannochloropsis oceanica

Overview
NameNO10G01250
Unique NameNO10G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1185
Alignment locationchr10:369589..370773 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:369589..370773 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G01250 vs. NCBI_GenBank
Match: EWM25430.1 (hypothetical protein Naga_100005g127 [Nannochloropsis gaditana])

HSP 1 Score: 181.0 bits (458), Expect = 7.100e-42
Identity = 115/238 (48.32%), Postives = 153/238 (64.29%), Query Frame = 0 
Query:   17 VFEIREWLDEDGKEVSSEVYSVREAARQVQALNLFGALEKAAKAKKEATTAAATAAEVNDAVNSHFSVKVDEVSTKTTLSSSNSGSRHKASNRHPAQLNAGGALPNVTSQLLDDHDWEGIKKRAKEIETLQRRSVHGELEAEADTAKGRDRLEGVGWGKGFFLNNEESKSTGKKDTNNASSMKGNLTVTTRHISSPIKSILHTKSSYGGSKKHVSFNLDSSPTPRHKPLEFLSHSRVP 255
            VFEIREW+D++GKEVSSEVYSVREAARQV+ L+L G LEKAA A K+A+TAAA A EV +A  + F       S +    ++   +  ++SN        G +LP+ T QLLDD DWEGIK+RA EI++ Q +S+ GELEAEAD+ +GR++LEG GWGKGFFL+    +  G     N+S  +     T   I SP+     TK++    KKHVSF+L S+P  R + L+FL   R+P
Sbjct:  104 VFEIREWVDDEGKEVSSEVYSVREAARQVKKLDLLGVLEKAAAANKKASTAAAIATEVKEAERAAFGNNQTPTSNRDV--NNRVAADSESSNASSNGCKTGASLPSSTQQLLDDQDWEGIKERASEIQSQQFKSIRGELEAEADSRQGRNKLEGSGWGKGFFLSTGRERIGG-----NSSGTESTTKPTKSCIKSPV-----TKTA--RVKKHVSFDLHSAPASR-ESLDFLPRRRIP 326
The following BLAST results are available for this feature:
BLAST of NO10G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25430.17.100e-4248.32hypothetical protein Naga_100005g127 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000994NSK000994Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01250.1NO10G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586493gene_4092Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g127gene5149Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01250.1NO10G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01250 ID=NO10G01250|Name=NO10G01250|organism=Nannochloropsis oceanica|type=gene|length=1185bp
ATGGCAGCCACCAGCAATGGGCAGCTTTCCGCCGAGGATGAGGGCGATGT
GTTTGAGATCCGGGAATGGCTCGACGAGGACGGGAAAGAGGTATCGTCGG
AAGTGTACAGTGTGCGGGAGGCAGCCAGACAAGTGCAGGCGCTTAACTTA
TTTGGGGCCTTAGAGAAGGCCGCTAAGGCCAAGAAAGAGGCCACTACCGC
CGCAGCTACCGCTGCCGAGGTTAATGATGCCGTGAACAGCCATTTTTCAG
TGAAAGTAGACGAGGTATCGACTAAGACCACGTTGAGCAGCAGCAACAGC
GGCAGCAGGCACAAAGCAAGTAACCGCCATCCCGCTCAGCTGAATGCTGG
GGGCGCTCTTCCGAACGTGACGAGCCAGCTTTTAGATGACCATGATTGGG
AAGGGATCAAGAAACGCGCGAAGGAAATCGAAACCTTGCAGCGTAGGTCC
GTGCATGGAGAATTAGAGGCAGAGGCGGACACGGCGAAAGGACGGGATAG
GCTCGAAGGGGTCGGTTGGGGAAAGGGCTTCTTTCTTAACAACGAAGAAA
GCAAAAGTACCGGCAAAAAGGATACCAACAACGCTAGCAGCATGAAGGGG
AACCTGACCGTTACCACCAGGCATATATCATCTCCGATCAAGAGCATTTT
GCACACTAAGAGCTCGTATGGCGGCAGCAAGAAGCACGTGAGCTTCAACC
TCGATTCTTCTCCAACTCCTCGACACAAACCTCTAGAATTCTTGTCACAT
TCTCGCGTCCCTCGCCCTTACCAAGCGGAAGCAGAAGAGGAGAAGGACGA
GGAAAAACGCGCGTTGGCTGCCCTGCGACGGCAGCTGCAGCAGCGACAGC
AGATGCAGCAGTTTCAATCCGAGGACGAGGAGGAGAAAGCGCAAGCTGAA
GCCTTCACTGGACAAGTAAGCGAGATGAATGTGGAAGAGAAGAAAGAGAA
AGGGGCAGGAGCATCGGATGGAGCATGTAACATGCCAGCGCCCCAACCGA
CGCAGAGATCGCAGCCAAGGATGGCGATTAACGCAGGAGCAGGAGCAGGA
GCAAGAGCGGGGGAAGTTGTCACATTCACGACAGGAGGAGGAGATAGGGC
TGACATTGCTCCTCCGGGCATGTCTCGCTTCAAGGCCCGGGCGCTTGGAC
TGACGTTCGAGGGCGACGAGGAGGGGAGCAACTGA
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protein sequence of NO10G01250.1

>NO10G01250.1-protein ID=NO10G01250.1-protein|Name=NO10G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MAATSNGQLSAEDEGDVFEIREWLDEDGKEVSSEVYSVREAARQVQALNL
FGALEKAAKAKKEATTAAATAAEVNDAVNSHFSVKVDEVSTKTTLSSSNS
GSRHKASNRHPAQLNAGGALPNVTSQLLDDHDWEGIKKRAKEIETLQRRS
VHGELEAEADTAKGRDRLEGVGWGKGFFLNNEESKSTGKKDTNNASSMKG
NLTVTTRHISSPIKSILHTKSSYGGSKKHVSFNLDSSPTPRHKPLEFLSH
SRVPRPYQAEAEEEKDEEKRALAALRRQLQQRQQMQQFQSEDEEEKAQAE
AFTGQVSEMNVEEKKEKGAGASDGACNMPAPQPTQRSQPRMAINAGAGAG
ARAGEVVTFTTGGGDRADIAPPGMSRFKARALGLTFEGDEEGSN*
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Synonyms
Publications