NO10G01220, NO10G01220 (gene) Nannochloropsis oceanica

Overview
NameNO10G01220
Unique NameNO10G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2315
Alignment locationchr10:362308..364622 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:362308..364622 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR013656PAS_4
IPR000014PAS
Homology
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BLAST of NO10G01220 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-13
Identity = 45/133 (33.83%), Postives = 79/133 (59.40%), Query Frame = 0 
Query:  276 ANGQKARAARKKAFASLSKEERVERRKEKARLYSHVARRRQESNMRELKAEMECLTVYRLIIEESPDMIVVLHPDLEGRVLFANAAFARGVEAMPGGYMGKPLWAVIHETHRGVVNDAIRNLLMNPETITRLK 409
            A   + + AR+   +  +  E+ ERRKE+AR+YS   R RQ + +  L+ +++ L+VY+L+++E+P++  VL  D + +VL+ANAAFAR     P   +G+ +W V+H   +  V  A  + +M  E + R +
Sbjct:  272 ARRSEGKRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKEEVGRAR 404
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BLAST of NO10G01220 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 75.9 bits (185), Expect = 3.600e-10
Identity = 55/176 (31.25%), Postives = 90/176 (51.14%), Query Frame = 0 
Query:  278 GQKARAARKKAFASLSKEERVERRKEKARLYSHVARRRQESNMRELKAEMECLTVYRLIIEESPDMIVVLHPDLEGRVLFANAAFARGVEAMPGGYMGKP-----LWAVIHETHRGVVNDAIRNLLMNPETITRLKIQAKYPH---PDYPGQGPMMDL----TMRHTPTGLVCYMR 442
            G+K RA R   F+ L+ EE+++ +K +AR YS +AR RQ      L+AE+  L VY+ ++E +PD +++L  D +GR+LFAN    +    +P G   KP     LW  +  T R  +  AI  +++    +  +      P    P +  +GP   L    T+R +  GL+  +R
Sbjct:  323 GKKRRAPRMD-FSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHLVRAVPCTVWLPSGSVPKHDARGPQQSLKVLITLRSSAQGLILIIR 497
The following BLAST results are available for this feature:
BLAST of NO10G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23721.11.200e-1333.83conserved unknown protein [Nannochloropsis gaditan... [more]
EWM23655.13.600e-1031.25pas pac sensor hybrid histidine kinase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01220.1NO10G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586527gene_4095Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01220.1NO10G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01220 ID=NO10G01220|Name=NO10G01220|organism=Nannochloropsis oceanica|type=gene|length=2315bp
GTGTAAGCGTGTTATTAAAGTTAGACCCCGTCGGATCTAAGAACTTTTAC
AACATGGAACTGTGTTAGGGGAGATCGATGTAAGCAGTGAAGTGCTGATC
ATGGTCAACCCCGTTAACTGCTGGGGGGGATGTGCTTGTTGCTAAAATGC
TGCAAAACTGCAATACAACAGGCGCCAGGGGGAGAGAACGAGTAAAGGCA
TCGTCCAAGCATACAAGAAGTAAAATAGACAGCAAGGTCGTCGGCACCCT
TTTTGGGCGACGGAAATTTTACCTATCGCGGCCTCCACCCGCGGGCCCCG
ACGATCAAGGCGAAGCCCATGAAGAATTGACCGAGACACTGAGCATCGGC
GAACGCAGACGGCAGCAAGACCCATTCAAAATACATGCCTGCTCAAAACA
GTTAGCGTTGACAACAACATGAACACCCTCCTTGCCCTTGTCTTCCGGAA
ACACCTTCCGTGACTCTGTTCCTCAAGTTTCTAGATGCCGATCCCCCACC
TTCGGTGACTGACCCTCTGCGACAGTCTTGAGACGCACGCCCGAGCATGC
CTCTGCCGTCGAAGGGGGTGTCTTATCCTCGGTGGAGTTCGTACGACCGA
CCTTCACATGCACATCCCCGGGCTCACAACCCATCCTGCCAGTGCTCTAT
GTGCGAATAAGTCGGGCCCAACTCAAACTTTGATGTCCATGGGTAGCATA
CTAACTTTAACCCTAATAACGTGATTGTTCTCTTCTTTATGGAGCACAGG
AAGTCCCGAGGTCTCAGGAGCTTATTCTCCCGGTCTCCAACTCTCCAGGT
CAATCATCCCTCCTTCCCTGGCCGTGTTTCGTCCGTCCACTGATCAAGTG
GCAACCTCTTCAAGAGGAGGAGGGAAAAGCAACATGTCCGGCCCCCACGG
CAGTACCGGCACAAGCAGCAGCATCGGTGGTGGAGCCGGGGAAGGAGGAG
CAATGCCCCCTCGTCCTCAAATGGGTGCGAATAGCAGCGGCAGCAATAAC
GCAGGTAGCTGGTCCAGTGCCGGGTATCATCATCAGCAGCACCAGCACCA
GCAGCCGCAGCAACAACAACTAAAGCAGGCGCAGGGGCAAGGAGTGGTGA
GCCCGATGAGTGCGCTGCAGCGCCTGTTGTCGCTTCAGAGGGGGCAGCCC
TTGCCTTTGCCTGCCAATCTGGTACCACCGAAACCAGGGGGAGGAGTGGG
GGGAGGGAGCGCGATGGCGTCTTCATATCAGGCCGGGATAGCGATGAATC
GGAATAAGAGGGGGTTTGGGGCGGTGATGGGCGGGGAAGGAGTAAAGGGA
ATGAGTGATAGTGGCATGAGCAGTACCAGCATTGAGAGGAGGGAGGAGGG
AATGATGGAGGGATGGAGGGGGCATCACCAGCAACAGCAAATGTTGTCAT
CGGCAGGCTCGGCGGCAGCTGCTTTCCTAGGGACTGGGTTAAGGGGGGGC
AAGATGACGATGGATGGTAGCGAAGAAACTGGAGGTGGTGGTGGGAGAGG
GAAAAGTATGTCGCCGATGACCTTGCGGCCTCCGACATCAGTAGAAGGGA
GGGGGAGAGGAGTAGTGATGAGCAGCTCCAACAGTTTGAGTGCGAGTAGC
GAGGGTGACAGGGAAGAGGAGGAGGAGAAAGAGGAGATGGGGGACGACTA
TAACGAGGAGCTGGATGGTGATGAAAGCTATTCGGATTCGGTGGAGGATG
GCGGGGGAGCAAACGGGCAGAAGGCGCGAGCCGCGAGGAAGAAGGCGTTT
GCGAGCTTGAGTAAGGAGGAGAGGGTAGAACGGAGGAAGGAGAAGGCGAG
GCTGTATTCGCATGTGGCGCGGAGACGGCAGGAGAGTAACATGAGGGAGT
TGAAGGCGGAGATGGAGTGCTTGACGGTTTATCGACTGATAATCGAAGAG
AGCCCTGATATGATCGTGGTGCTACACCCCGATCTCGAGGGGCGGGTTTT
GTTCGCCAATGCGGCCTTTGCCCGGGGAGTGGAAGCCATGCCGGGGGGGT
ATATGGGAAAGCCGCTTTGGGCGGTGATCCACGAGACCCATCGGGGGGTG
GTGAATGATGCGATTAGAAACCTTTTGATGAACCCAGAGACCATAACCCG
CTTGAAGATTCAGGCGAAGTACCCACATCCGGATTACCCAGGGCAAGGAC
CGATGATGGATCTTACGATGAGGCATACGCCCACGGGCCTTGTGTGTTAT
ATGCGACAGGCTTAGGCAGTTTAAAGTGGGGGGCGGGGGGGGGAGGATGA
AGATAAGGAGCGGAGGAGGATGTAAGTGGGTGTATGTGTAAAGCGCCCCG
TGTCGGGGAGGCCGG
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protein sequence of NO10G01220.1

>NO10G01220.1-protein ID=NO10G01220.1-protein|Name=NO10G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MSGPHGSTGTSSSIGGGAGEGGAMPPRPQMGANSSGSNNAGSWSSAGYHH
QQHQHQQPQQQQLKQAQGQGVVSPMSALQRLLSLQRGQPLPLPANLVPPK
PGGGVGGGSAMASSYQAGIAMNRNKRGFGAVMGGEGVKGMSDSGMSSTSI
ERREEGMMEGWRGHHQQQQMLSSAGSAAAAFLGTGLRGGKMTMDGSEETG
GGGGRGKSMSPMTLRPPTSVEGRGRGVVMSSSNSLSASSEGDREEEEEKE
EMGDDYNEELDGDESYSDSVEDGGGANGQKARAARKKAFASLSKEERVER
RKEKARLYSHVARRRQESNMRELKAEMECLTVYRLIIEESPDMIVVLHPD
LEGRVLFANAAFARGVEAMPGGYMGKPLWAVIHETHRGVVNDAIRNLLMN
PETITRLKIQAKYPHPDYPGQGPMMDLTMRHTPTGLVCYMRQA*
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Synonyms
Publications