NO10G01180, NO10G01180 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G01180
Unique Name	NO10G01180
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1401
Alignment location	chr10:350382..351782 -

Link to JBrowse

Properties


Property Name	Value
Description	Glutaredoxin

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:350382..351782 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity
GO:0009055	electron transfer activity
GO:0005515	protein binding
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis
GO:0019725	cellular homeostasis
GO:0006091	generation of precursor metabolites and energy

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR036282	Glutathione-S-Trfase_C_sf
IPR002109	Glutaredoxin
IPR004045	Glutathione_S-Trfase_N

Vocabulary: **Cellular Component**
Term	Definition
GO:0005623	cell

Homology

[Close]

BLAST of NO10G01180 vs. NCBI_GenBank
Match: EWM25410.1 (Glutaredoxin [Nannochloropsis gaditana])

HSP 1 Score: 465.3 bits (1196), Expect = 1.900e-127
Identity = 268/356 (75.28%), Postives = 294/356 (82.58%), Query Frame = 0

Query:   52 KRRDYRGPLLVGGSLVGASTLQYYLHQRAFTSPVILGQGHAHAQLVASTSAATTIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLEGLRITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNKPFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGASSCVHAE 408
            KRRDYRGPLLVGGSLVGAST+Q YLH RAF+SP +LG   A  QL+ S S+ T IG         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             PLEGLRITLYQYKICPFCCKVKAVLD+YK+PYET+DVNPLTKAEIKFS+DYRKVPIAR+G EVV DS +IV +I D+L AA VAP ++LD FF+P+A RWAEWAD ELAVLLFPNITR+FGES+QAFSYV +VPHFS LDKL+NQW+GATAMWAAQGKIKKKYNI DER ALF AL+ W+ EVG KPFL G+ PNVGDL VYACI AIEGLDA KDL+ANT I  WYTRVEHAIGASSCV AE
Sbjct:   51 KRRDYRGPLLVGGSLVGASTIQCYLHHRAFSSPTVLGPNQARNQLIVSASSVTAIG--------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTQDLQSQPASLNPLEGLRITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASSCVRAE 398

[Close]

BLAST of NO10G01180 vs. NCBI_GenBank
Match: CBN80040.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 293.9 bits (751), Expect = 7.700e-76
Identity = 139/228 (60.96%), Postives = 171/228 (75.00%), Query Frame = 0

Query:  166 LEGLRITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVG--NKPFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWY 392
            LEG  IT+YQYKICPFC K+K V+D+  IPY   +VNPLTK EIKFS DYRKVPI R+G E+  DS +I+ +++  LR   V   +E   F + +A +WAEWAD +LAVLLFPN+TR F ESYQAFSYV DV  FSM+DK++NQ IG+ AMWAAQGKIKKKYNI DER ALF+A++ W+  +   + PF  G  PN+GDLCV+ CIRAIEGLD HKD+LA  G+G WY
Sbjct:   30 LEGEDITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKISNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALREVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWY 257

[Close]

BLAST of NO10G01180 vs. NCBI_GenBank
Match: KOO25571.1 (hypothetical protein Ctob_008578 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 283.9 bits (725), Expect = 8.000e-73
Identity = 134/227 (59.03%), Postives = 171/227 (75.33%), Query Frame = 0

Query:  171 ITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIK-FSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSE-VGNKPFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVE 396
            + +YQY+ICPFC KVKA+LD Y++PYET +VNPLTK EIK +S  YRKVPIA++GDE V DS +I   ++D +  A V  AK+L  F +P+A  WA+W+D + AVLLFPNITR+F ESYQAF YV  VPHFSMLDK++NQ IG+  MW AQGKIKKKY I DERAA+ A +  W +E VG+KPF  G  PN  D+CV+ C++AI+  DA+K+++A T I PWY RVE
Sbjct:   45 VLIYQYEICPFCNKVKALLDLYRVPYETTEVNPLTKGEIKAWSGGYRKVPIAKLGDEQVNDSGVISQALLDRMGTAGVLDAKQLAEFRSPKALEWAKWSDEKFAVLLFPNITRSFSESYQAFGYVMSVPHFSMLDKVSNQIIGSFFMWMAQGKIKKKYGIDDERAAVVAGINHWLNEGVGSKPFAGGKQPNFADVCVFGCLKAIDRTDAYKEIMAETAIKPWYDRVE 271

[Close]

BLAST of NO10G01180 vs. NCBI_GenBank
Match: XP_005777220.1 (electron carrier/ protein disulfide oxidoreductase [Emiliania huxleyi CCMP1516] >EOD24791.1 electron carrier/ protein disulfide oxidoreductase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 261.2 bits (666), Expect = 5.500e-66
Identity = 128/239 (53.56%), Postives = 169/239 (70.71%), Query Frame = 0

Query:  171 ITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARI------GDEVVIDSSIIVGKIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSE-VGNKPFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANT-GIGPWYTRVEHAIGAS 402
            I LYQY+ICPFC K+KA+LD + + YET+DVNPLTK EIK  ++YRKVPIA +        E + DS +I  +++D + AA + PA+   AF +P+A  WA+W+D +LAVLLFPNITR+FGE+YQAF YV+DVPHFS  D+L+NQ +GA AMW AQGKIKKKY I DER AL  A+ TW  E +  + F  G  P+ GD+CVY C+RAI+   AH ++L +   +  WY R+E A+G S
Sbjct:   46 IRLYQYQICPFCNKIKALLDLHGLEYETVDVNPLTKKEIKPWSEYRKVPIAVLTPPAGGEPEQINDSPVIAERLLDAIDAAALRPARAAKAFRSPQAMEWAQWSDAKLAVLLFPNITRSFGEAYQAFGYVQDVPHFSTADRLSNQVVGACAMWMAQGKIKKKYAIDDERQALRGAIRTWVGEGLAGRAFAGGDAPHYGDVCVYGCLRAIDRTAAHAEILDDAPELARWYGRMEEAVGPS 284

[Close]

BLAST of NO10G01180 vs. NCBI_GenBank
Match: XP_005785506.1 (electron carrier/ protein disulfide oxidoreductase [Emiliania huxleyi CCMP1516] >EOD33077.1 electron carrier/ protein disulfide oxidoreductase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 260.8 bits (665), Expect = 7.200e-66
Identity = 128/239 (53.56%), Postives = 169/239 (70.71%), Query Frame = 0

Query:  171 ITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARI------GDEVVIDSSIIVGKIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSE-VGNKPFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANT-GIGPWYTRVEHAIGAS 402
            I LYQY+ICPFC K+KA+LD + + YET+DVNPLTK EIK  ++YRKVPIA +        E + DS +I  +++D + AA + PA+   AF +P+A  WA+W+D +LAVLLFPNITR+FGE+YQAF YV+DVPHFS  D+L+NQ +GA AMW AQGKIKKKY I DER AL  A+ TW  E +  + F  G  P+ GD+CVY C+RAI+   AH ++L +   +  WY R+E A+G S
Sbjct:   46 IRLYQYQICPFCNKIKALLDLHGLEYETVDVNPLTKKEIKPWSEYRKVPIAVLTPLAGGEPEQINDSPVIAERLLDAIDAAALRPARAAKAFRSPQAMEWAQWSDAKLAVLLFPNITRSFGEAYQAFGYVQDVPHFSTADRLSNQVVGAFAMWMAQGKIKKKYAIDDERQALRGAIRTWVGEGLAGRAFAGGDAPHYGDVCVYGCLRAIDRTAAHAEILDDAPELARWYGRMEEAVGPS 284

[Close]

BLAST of NO10G01180 vs. NCBI_GenBank
Match: POM73587.1 (Prostaglandin E synthase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 232.3 bits (591), Expect = 2.800e-57
Identity = 112/234 (47.86%), Postives = 155/234 (66.24%), Query Frame = 0

Query:  171 ITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPA-KELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNK-PFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGASS 403
            + LYQY+ CP+CCKVKAVLDY KIPYE ++VNPLTK E K   DYRKVP+ RI DEVV+DSS+I+ ++ +L+    VAP   +LD     E  +W +W D +L +L  PNI RT  E+ QAF Y      F+ +++  +++ GA  M+    + KKKYNI DER AL+ AL++W   +G+K PFL G  PN+ DL V+  +RA+ GLD + D++  T I PW+TR+   +GASS
Sbjct:   90 VVLYQYEPCPYCCKVKAVLDYLKIPYEVVEVNPLTKKETKAFTDYRKVPVIRIDDEVVVDSSVIISRLRELV----VAPKDSQLDEEALEEEEKWRQWVDQKLILLTPPNIYRTVPEALQAFDYCLTEGKFTPMERRMSKYAGAVVMYLIAKRSKKKYNIDDERQALYTALDSWVDAIGDKRPFLGGEEPNMADLSVFGVLRAMHGLDTYNDMMRETNIEPWFTRMTAKVGASS 319

[Close]

BLAST of NO10G01180 vs. NCBI_GenBank
Match: POM78514.1 (Prostaglandin E synthase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 232.3 bits (591), Expect = 2.800e-57
Identity = 112/234 (47.86%), Postives = 155/234 (66.24%), Query Frame = 0

Query:  171 ITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPA-KELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNK-PFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGASS 403
            + LYQY+ CP+CCKVKAVLDY KIPYE ++VNPLTK E K   DYRKVP+ RI DEVV+DSS+I+ ++ +L+    VAP   +LD     E  +W +W D +L +L  PNI RT  E+ QAF Y      F+ +++  +++ GA  M+    + KKKYNI DER AL+ AL++W   +G+K PFL G  PN+ DL V+  +RA+ GLD + D++  T I PW+TR+   +GASS
Sbjct:   90 VVLYQYEPCPYCCKVKAVLDYLKIPYEVVEVNPLTKKETKSFTDYRKVPVIRIDDEVVVDSSVIISRLRELV----VAPKDSQLDEEALEEEEKWRQWVDQKLILLTPPNIYRTVPEALQAFDYCLTEGKFTPMERRMSKYAGAVVMYLIAKRSKKKYNIDDERQALYTALDSWVDAIGDKRPFLGGEEPNMADLSVFGVLRAMHGLDTYNDMMRETNIEPWFTRMTAKVGASS 319

[Close]

BLAST of NO10G01180 vs. NCBI_GenBank
Match: OWY96711.1 (Prostaglandin E synthase [Phytophthora megakarya])

HSP 1 Score: 229.2 bits (583), Expect = 2.300e-56
Identity = 109/234 (46.58%), Postives = 152/234 (64.96%), Query Frame = 0

Query:  170 RITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNK-PFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGASS 403
            ++ LYQY+ CP+CCKVKAVLDY KIPYE ++VNPL+K E K   DY KVP+ RI DEVV+DSS I+ ++ +L+    VAP    +     E  +W +W D +L VL  PNI RT  E+ QAF Y      F+ +++  +++ GA  M+    + KKKYNI DER AL++AL++W   +G K PFL G  PN+ DL V+  +RA+ GLD + D++  T I PW+TR+   +GASS
Sbjct:   88 KVVLYQYEPCPYCCKVKAVLDYLKIPYEVVEVNPLSKKETKTFTDYSKVPVVRIDDEVVVDSSAIISRLRELV----VAPKTSQNEEALEEEEKWRQWVDQKLIVLTPPNIYRTVPEALQAFDYCLTEGKFTPMERRMSKYAGAVVMYLIAKRSKKKYNIDDERQALYSALDSWVGAIGEKRPFLGGDEPNMADLSVFGVLRAMNGLDTYNDMMRETNIEPWFTRMTDKVGASS 317

[Close]

BLAST of NO10G01180 vs. NCBI_GenBank
Match: GAX95480.1 (Hypothetical protein PINS_003366 [Pythium insidiosum])

HSP 1 Score: 228.8 bits (582), Expect = 3.000e-56
Identity = 107/238 (44.96%), Postives = 155/238 (65.13%), Query Frame = 0

Query:  170 RITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNKPFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGASSCVHAE 408
            ++TLYQY+ CP+CCKVKAVLDY +IPY  ++VNPLTK E +   DY+KVP+ RI DEVV+DSS I+ ++ +L        A+ +D     E  +W +W D +L ++  PNI RT  E+ QAF Y      F+ +++  +++ GA  M+    + KKKY I DER AL+ ALE+W S VG++ FL GS PN+ DL V+  +RA++GL    DL+ANT I PW+ R+   +G+S+ V +E
Sbjct:   91 KVTLYQYEPCPYCCKVKAVLDYLRIPYHVVEVNPLTKKETQAFTDYKKVPVVRIDDEVVVDSSAIIARLRELAVELGAQEAESVDGVSFEEEEKWRKWVDEKLILMTPPNIYRTVPEALQAFDYCLTEGKFTPMERRLSKYSGAVIMYLIAKRSKKKYGIEDERQALYDALESWVSAVGDRAFLGGSVPNMADLSVFGVLRAMKGLQTFDDLMANTTIQPWFDRMTDRVGSSTRVSSE 328

[Close]

BLAST of NO10G01180 vs. NCBI_GenBank
Match: XP_002282513.1 (PREDICTED: prostaglandin E synthase 2 [Vitis vinifera])

HSP 1 Score: 227.6 bits (579), Expect = 6.800e-56
Identity = 110/236 (46.61%), Postives = 155/236 (65.68%), Query Frame = 0

Query:  171 ITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNKPFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGASSCVHA 407
            + LYQY+ CPFC KVKA LDYY IPY+ ++VNPL+K EIK+S DY+KVPI  + DE ++DSS I+ K+ D      + P K  D+    E  +W +W D  L  +L PNI R+  E+ ++F Y+    +FS  +KLT ++ GA AM+    K+KK++NITDERAAL+ A ETW   +  + FL GS PN+ DL V+  +R I  L + +D++ NT IG WYTR+E+A+G SS + A
Sbjct:  120 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPLSKREIKWS-DYKKVPILMVNDEQLVDSSAIIDKMSD-----KILPKKSADSASDDEERKWRQWVDNHLVHVLSPNIYRSTSEALESFDYITSNGNFSFTEKLTVKYAGAAAMYFVSKKLKKRHNITDERAALYEAAETWVDGLNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVENTRIGEWYTRMENAVGESSRIKA 349

The following BLAST results are available for this feature:

BLAST of NO10G01180 vs. NCBI_GenBank

BLAST of NO10G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM25410.1	1.900e-127	75.28	Glutaredoxin [Nannochloropsis gaditana]	[more]
CBN80040.1	7.700e-76	60.96	conserved unknown protein [Ectocarpus siliculosus]	[more]
KOO25571.1	8.000e-73	59.03	hypothetical protein Ctob_008578 [Chrysochromulina...	[more]
XP_005777220.1	5.500e-66	53.56	electron carrier/ protein disulfide oxidoreductase...	[more]
XP_005785506.1	7.200e-66	53.56	electron carrier/ protein disulfide oxidoreductase...	[more]
POM73587.1	2.800e-57	47.86	Prostaglandin E synthase [Phytophthora palmivora v...	[more]
POM78514.1	2.800e-57	47.86	Prostaglandin E synthase [Phytophthora palmivora v...	[more]
OWY96711.1	2.300e-56	46.58	Prostaglandin E synthase [Phytophthora megakarya]	[more]
GAX95480.1	3.000e-56	44.96	Hypothetical protein PINS_003366 [Pythium insidios...	[more]
XP_002282513.1	6.800e-56	46.61	PREDICTED: prostaglandin E synthase 2 [Vitis vinif...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL053	nonsL053	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL052	nonsL052	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR004	ncniR004	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR017	ngnoR017	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR015	ngnoR015	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000989	NSK000989	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO10G01180.1	NO10G01180.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623077	gene_4099	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100005g132	gene5154	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO10G01180.1	NO10G01180.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO10G01180 ID=NO10G01180|Name=NO10G01180|organism=Nannochloropsis oceanica|type=gene|length=1401bp
ACAGCAATACAGTAAGTACTTCATCGCCGCGACCTGGGAGTCCGGACGAT
CCTTCGTCGGGTGCTGTTGCTGCTAGTCAGAAAAATTGTCATGTTGCATC
GGACTGTCGCCGCCTCTACCGTAAGCCGGTGCCCCCTGGCCACCACGTCC
CCTGCAGCTGCCTCCGCTGCGGCTTCTGCTCTGATGTCCCCCGGCTGCCG
GCGGTCGTCTCACAGCCACCACGACGGCAACAACTCGCACAGCAAACGTC
GAGATTATCGAGGCCCCTTGCTCGTTGGCGGCTCGTTAGTTGGGGCATCG
ACGCTCCAGTACTACCTCCACCAACGAGCGTTCACTAGTCCCGTGATTTT
GGGGCAAGGACATGCCCATGCGCAGCTCGTCGCCTCAACTTCCGCGGCCA
CCACCATTGGAGCAGCAGCGGCCGCCACCTTTTCGACCACGGCAGCAACC
TCCTCACCGGCCACCAATGCAACTACCAGCACCACACCATCTCCGACCAT
GCATGCGTCCTCGGTGGCATCTCGCCCCTTGTCCTCCTCTGCCTCCACAT
CCGCCCCGACGAGCTACAGCAGCAGCGCAAACCCTTTAGAAGGCCTGCGG
ATCACCCTCTATCAATACAAAATATGCCCCTTCTGCTGCAAAGTCAAGGC
TGTCCTGGACTACTACAAAATCCCCTACGAGACCATGGATGTCAATCCTC
TTACCAAAGCCGAAATAAAGTTCTCCGCTGACTACCGCAAGGTACCAATT
GCCCGGATAGGGGATGAGGTGGTCATTGATTCCTCCATCATCGTCGGCAA
GATTATGGATTTGCTCCGCGCGGCCCACGTGGCCCCTGCGAAAGAATTGG
ACGCGTTTTTCGCACCTGAGGCGACGCGATGGGCCGAATGGGCGGATATG
GAGTTAGCAGTATTGTTGTTTCCTAATATAACCCGGACATTTGGAGAATC
ATACCAGGCGTTTAGTTACGTGAAGGATGTGCCTCATTTTTCGATGCTTG
ATAAACTAACTAATCAATGGATAGGTGCCACGGCTATGTGGGCAGCACAG
GGGAAGATAAAGAAAAAGTACAACATCACGGATGAACGCGCTGCGCTGTT
TGCGGCGTTGGAGACCTGGAGTAGCGAGGTGGGGAACAAGCCGTTTTTGA
GCGGGAGTACTCCCAATGTGGGGGATTTGTGTGTGTATGCTTGCATTCGA
GCTATTGAGGGGTTGGATGCCCATAAGGATTTGCTGGCGAACACGGGGAT
AGGACCCTGGTATACACGGGTGGAGCATGCGATAGGGGCGTCGTCGTGTG
TGCATGCGGAGTAAGATTGATAAAAGGACTGGGCGAGGTAGGCTGATGGG
ATTGGAAGAAAATGGCAGGGAAAGAAAAAAAAGAATGGGATGATTTTGCA
A

protein sequence of NO10G01180.1

>NO10G01180.1-protein ID=NO10G01180.1-protein|Name=NO10G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MLHRTVAASTVSRCPLATTSPAAASAAASALMSPGCRRSSHSHHDGNNSH
SKRRDYRGPLLVGGSLVGASTLQYYLHQRAFTSPVILGQGHAHAQLVAST
SAATTIGAAAAATFSTTAATSSPATNATTSTTPSPTMHASSVASRPLSSS
ASTSAPTSYSSSANPLEGLRITLYQYKICPFCCKVKAVLDYYKIPYETMD
VNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPA
KELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHF
SMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNK
PFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGA
SSCVHAE*

Synonyms

Publications