NO10G01160, NO10G01160 (gene) Nannochloropsis oceanica

Overview
NameNO10G01160
Unique NameNO10G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length985
Alignment locationchr10:346878..347862 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:346878..347862 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO10G01160 vs. NCBI_GenBank
Match: EWM25383.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 334.3 bits (856), Expect = 3.200e-88
Identity = 179/255 (70.20%), Postives = 202/255 (79.22%), Query Frame = 0
Query:    1 MALPHRTPLILVTSLLAMVAVAHGFFLRPSTLRVSTIMTAH---QQLEHSPATGLDRKAALQQGVVLTSVFLFVAGASPLPVRAKDNKPAALSFEECVSKLLLSKKVLQPVAKYIKIGQYDPARTNIKYVTNQFRLKKAMERIVLLAFEKDVSQSKLDEAAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQAFEFYDTVLDSIDKVLSLAGAEDISAAQKLVDGTPLPSFLFKQFADGQTFRPPTP 253
            M++   +   +V  +L + A+  GFFL P T   +T+M A    Q         LDR AALQQG  L+S FLF+  +   P +AK++ PAA SFEEC+S+LLLS+KVL+PV KYIKIGQYDPARTNIKYVTNQFRLKKAMER+VLLAFEKD+ QSKLD+AAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQAFEFYDT LDSIDKVLSLA  ED+  AQKLVDGT LP FLFK FADGQTFRPPTP
Sbjct:    1 MSIRRFSTFFVVIWVLILAAITQGFFLAPCTRSATTLMQAQASKQSQNRVDGGKLDRLAALQQGAFLSSAFLFLTASLSSPAQAKNSAPAA-SFEECISRLLLSRKVLEPVQKYIKIGQYDPARTNIKYVTNQFRLKKAMERVVLLAFEKDLPQSKLDDAAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQAFEFYDTTLDSIDKVLSLASPEDLKEAQKLVDGTSLPPFLFKSFADGQTFRPPTP 254          
BLAST of NO10G01160 vs. NCBI_GenBank
Match: CBJ29602.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 111.7 bits (278), Expect = 3.400e-21
Identity = 63/167 (37.72%), Postives = 97/167 (58.08%), Query Frame = 0
Query:   78 PVRAKDNKPAALSFEECVSKLLLSKKVLQPVAKYIKIGQYDPARTNIKYVTNQFRLKKAMERIVLLAFEKDVSQSKLDEAAEVTAVIDNTLSQLDSSVYTQIFIP--TDGEISPDALKYQKQAFEFYDTVLDSIDKVLSLAGAEDISAAQKLVDG--TPLPSFLFKQ 241
            P  +K  + AA S EE  + +++ K+V +P  +Y+K  Q+D ARTN  Y+T  F LKK ++  ++ A +       +++A ++   ++   +  DSSVYT IFIP   DG + P A KY KQA+ FYD +   +D  + L   E  +AA+KL+     PLPSFLFK+
Sbjct:   91 PALSKRAEAAAQSLEELEADIMICKEVFKPTLQYLKAEQFDAARTNTNYITRFFNLKKKIDSFIVQASDVVEDPDTMEKAFDMAQEVEALFTNFDSSVYTIIFIPADADGVLPPGAEKYLKQAYGFYDDINKVLDFYIDLVPPETKAAAEKLLPAKRAPLPSFLFKE 257          
BLAST of NO10G01160 vs. NCBI_GenBank
Match: XP_005705617.1 (hypothetical protein Gasu_34880 [Galdieria sulphuraria] >EME29097.1 hypothetical protein Gasu_34880 [Galdieria sulphuraria])

HSP 1 Score: 88.6 bits (218), Expect = 3.100e-14
Identity = 59/165 (35.76%), Postives = 86/165 (52.12%), Query Frame = 0
Query:   62 VVLTSVFLFVAGASPLPVRAKDNKPAALSFEECVSKLLLSKKVLQPVAKYIKIGQYDPARTNIKYVTNQFRLKKAMERIVLLAFEKDVSQSKLDEAAEVTAVIDNTLSQLDSSVYTQIFIPTDGE-ISPDALKYQKQAFEFYDTVLDSIDKVLSLAGAEDISAAQ 226
            V L  V+ F   ASP+     D + A +   +C       +++L PV  Y+  G +D ART++ Y T   RLK  M+ +  L  E  +     D+A E T  IDN +SQLD+S YT  FIP+D   ++    KYQ QA +FY  V+  +D  L L+  E++  AQ
Sbjct:   79 VTLIGVYCF---ASPVFAYNADMESALVPIIQC-------RQLLDPVEGYLNNGNWDKARTSVNYCTRVLRLKTNMKTVTNLLSEDTLK----DKAIEYTVDIDNAMSQLDASAYTPNFIPSDARGVTDQNQKYQMQAKDFYHKVIQELDAFLDLSPGEELKNAQ 229          
BLAST of NO10G01160 vs. NCBI_GenBank
Match: CEM20016.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 84.0 bits (206), Expect = 7.500e-13
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 0
Query:   93 ECVSKLLLSKKVLQPVAKYIKIGQYDPARTNIKYVTNQFRLKKAMERIVLLAFEKDVSQSKLDEAAEVTAVIDNTLSQLDSSVYTQIF-IPTDGEISPDALKYQKQAFEFYDTVLDSIDKVLSLAGAEDISAAQKLVDGTPLPSFL 238
            E ++ + + ++ + PV  YI  GQ+D AR+N+ Y T   RL   ++++       D+ +    E  E+   + NT+S LDSS+YT IF   T         KYQK+ + +YD  +  +D+ + L  +E ++ + +L D  PLP FL
Sbjct:   54 EAIATVFVCRRAMDPVKGYIAEGQWDRARSNVNYCTRVLRLNSVLKKV-----SNDIDEV---EGLEIAGDLLNTMSDLDSSIYTPIFAFDTASGTQRSFAKYQKECYRYYDESVALLDRFIQLLPSELLAESSQLADARPLPKFL 191          
BLAST of NO10G01160 vs. NCBI_GenBank
Match: XP_005535411.1 (hypothetical protein CYME_CMD034C [Cyanidioschyzon merolae strain 10D] >BAM79125.1 hypothetical protein CYME_CMD034C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 38/134 (28.36%), Postives = 73/134 (54.48%), Query Frame = 0
Query:   86 PAALSFEECVSKLLLSKKVLQPVAKYIKIGQYDPARTNIKYVTNQFRLKKAMERIVLLAFEKDVSQSKLDEAAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQAFEFYDTVLDSIDKVLSLAGAE 220
            P  L  +  V  +++ +++L+P+ +Y++ G +D AR+N+ Y T   RL  A+  +       +    K + A  V++ + N ++QLD+++YT IF+ +D  +SP   KY  +A  + +     +D  LSL  +E
Sbjct:   84 PYDLGTDRGVQAVMVCRELLEPIPRYVESGSWDKARSNVNYCTRTLRLHTALRAVTDRLLTPEYDLEKHESAMRVSSDLPNVMTQLDATLYTPIFMASDQGVSPAQRKYGDEALGYLEQAKQMLDHYLSLLPSE 217          
BLAST of NO10G01160 vs. NCBI_GenBank
Match: OSX69233.1 (hypothetical protein BU14_1714s0002 [Porphyra umbilicalis])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 49/130 (37.69%), Postives = 71/130 (54.62%), Query Frame = 0
Query:   90 SFEECVSKLLLSKKVLQPVAKYIKIGQYDPARTNIKYVTNQFRLKKAMERIVLLAFEKDVSQSKLDEAAEVTAVIDNTLSQLDSSVYTQIFIPTD-GEISPDALKYQKQAFEFYDTVLDSIDKVLSLAGA 219
            S +E ++ L+  +  L P+  Y+K G++D ARTN+ Y T   RL   + R    A   D     LD  ++V     N  +QLD+S YT  FIP D GEI  +A KY +Q   F D V   +D++L+LAG+
Sbjct:   89 SLDEPLTSLVQCRAALPPIRGYLKAGKWDKARTNVNYCTRVLRLSTNI-RTYATALGGDAYYDALDVLSDVM----NLTTQLDASAYTAGFIPADEGEIPLEAKKYMEQGLAFLDEVEGLMDQLLALAGS 213          
The following BLAST results are available for this feature:
BLAST of NO10G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM25383.13.200e-8870.20conserved unknown protein [Nannochloropsis gaditan... [more]
CBJ29602.13.400e-2137.72conserved unknown protein [Ectocarpus siliculosus][more]
XP_005705617.13.100e-1435.76hypothetical protein Gasu_34880 [Galdieria sulphur... [more]
CEM20016.17.500e-1331.51unnamed protein product [Vitrella brassicaformis C... [more]
XP_005535411.12.000e-1028.36hypothetical protein CYME_CMD034C [Cyanidioschyzon... [more]
OSX69233.12.000e-1037.69hypothetical protein BU14_1714s0002 [Porphyra umbi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000986NSK000986Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01160.1NO10G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100005g134gene5156Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01160.1NO10G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01160 ID=NO10G01160|Name=NO10G01160|organism=Nannochloropsis oceanica|type=gene|length=985bp
ATGGCCCTACCTCATCGCACACCACTTATTCTTGTGACTTCGCTCCTTGC
CATGGTCGCCGTGGCGCACGGCTTTTTCCTCCGCCCTTCGACCCTCAGAG
TCAGCACGATTATGACGGCCCACCAGCAGTTAGAGCACTCCCCAGCCACA
GGGCTCGACCGAAAGGCCGCCCTGCAACAAGGTGTTGTACTAACATCGGT
ATTTCTATTTGTAGCTGGCGCATCTCCTCTCCCGGTCCGAGCCAAGGATA
ACAAGCCGGCCGCACTAAGCTTTGAGGAATGTGTCTCAAAGCTCCTGCTA
AGCAAGAAGGTCCTGCAGCCCGTAGCAAAGTATATTAAAATTGGCCAGTA
CGACCCCGCACGTACCAATATCAAGTATGTGACAAATCAGTTTCGATTGA
AGAAGGCAATGGAGCGGATTGTCCTGCTGGCGTTTGAGAAGGACGTTTCG
CAGAGCAAACTTGATGAGGCAGCCGAGGTGACTGCCGTGATTGACAATAC
CTTATCCCAGCTAGATTCGAGTGTCTACACGCAGATCTTTATTCCCACTG
ACGGTGAGATCAGTCCTGATGCGCTCAAGTATCAGAAACAGgttcgtttc
taggccttatgataaatatatactgttattctttttgggggcttgcattt
tttgttttctcttttcatgctgacactattttaagtggccgcaaaatgaa
gcagcatcaccccatctgtttcccttccttacagcagtactccttttctc
catcccccgcccttcttcgggttaacttatcattcattcttacccttccg
ccaccaaatgaacacagGCTTTTGAATTCTATGACACTGTCTTGGACTCC
ATCGATAAAGTCCTCTCCCTTGCAGGCGCTGAGGACATTTCCGCAGCCCA
AAAGCTGGTTGATGGGACGCCCCTCCCTTCCTTCCTCTTTAAGCAGTTCG
CCGACGGGCAGACATTCCGCCCCCCCACTCCTTAG
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protein sequence of NO10G01160.1

>NO10G01160.1-protein ID=NO10G01160.1-protein|Name=NO10G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MALPHRTPLILVTSLLAMVAVAHGFFLRPSTLRVSTIMTAHQQLEHSPAT
GLDRKAALQQGVVLTSVFLFVAGASPLPVRAKDNKPAALSFEECVSKLLL
SKKVLQPVAKYIKIGQYDPARTNIKYVTNQFRLKKAMERIVLLAFEKDVS
QSKLDEAAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQAFE
FYDTVLDSIDKVLSLAGAEDISAAQKLVDGTPLPSFLFKQFADGQTFRPP
TP*
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Synonyms
Publications