NO10G00960, NO10G00960 (gene) Nannochloropsis oceanica

Overview
NameNO10G00960
Unique NameNO10G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3553
Alignment locationchr10:297216..300768 +

Link to JBrowse

Properties
Property NameValue
DescriptionDdb1-and cul4-associated factor 8
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:297216..300768 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
BLAST of NO10G00960 vs. NCBI_GenBank
Match: EWM25335.1 (ddb1- and cul4-associated factor 8 [Nannochloropsis gaditana])

HSP 1 Score: 456.8 bits (1174), Expect = 1.300e-124
Identity = 263/576 (45.66%), Postives = 312/576 (54.17%), Query Frame = 0
Query:   25 LTFDLLFGRQQSPNVTHQAMNRRVCTAPSTLERFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASHQQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXKIMARHGGRAHRLALMRQSSSLFLTCGEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSNLFVVGGASVYVHLYDTRMPEKEVGRFAPRHMRGVREG-GRGGGGSNAHVTGTAFNWNGREFLATYNDECVYRFTLGKDEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTHSGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRPTAEGGREGRRKGSLKAHGGEAAEDLVRRNERERVREGXXXXXXXMANFASRLMQAAL 600
            LTFD+LFGRQQS  +TH    RRV +APS + + ++DGRL GH GCVNTVAFS+ GDFCVTGSDDTYLM+W+VA+H+  ++ LSGH+ NIFCARFLP TNNTE+VS AADGQVRWNSL R  S                           K +ARH GRAHRLA+   +S  FLTCGEDG VL FD R+  KR LLT       V   E  V+PLYALSCSP D + FVVGG SVY+H YD R   + VGR+AP H+R  ++G  +     + H+TGTAFNWNGRE LATYNDECVY F +  D                                                                                                                                 +GYTQV+RGHRND TVKQVNF+G RSEYV+SGCD+GHIFMW+T SG L QLL+GDRRGAVNCLE+HP LP++ TSGLEHDVK+WRPT        RKG+LKAHGGE AE L  RN +ER +         ++NF   +M  AL
Sbjct:   35 LTFDVLFGRQQSRIITHHNTCRRVRSAPSMVGKLKVDGRLTGHRGCVNTVAFSEHGDFCVTGSDDTYLMLWDVAAHECRMKHLSGHQGNIFCARFLPHTNNTEVVSVAADGQVRWNSLARPSS----------LLHCPWIVLTLPLSGISKQLARHNGRAHRLAVTETTS--FLTCGEDGRVLGFDTRDAHKRHLLT-------VTTPEDDVIPLYALSCSPVDGHSFVVGGTSVYMHHYDARHVREPVGRYAPFHLRDDKDGASKARKLVSDHITGTAFNWNGREVLATYNDECVYLFRVECDAARGGAEGEGEQVPWESSQDGLASDHGEERAEHRRPSHMGPREAEEDGQEDASPRAGDSPALHPCSAAYSNPQKRMRQQTSTRQTMRGDVVEEKL----------------------------------RGYTQVFRGHRNDHTVKQVNFFGARSEYVVSGCDTGHIFMWETQSGELAQLLYGDRRGAVNCLETHPNLPVLATSGLEHDVKIWRPTR---GLSVRKGALKAHGGETAEKLAERNAKERKKAA------RISNFTRFMMGRAL 548          
BLAST of NO10G00960 vs. NCBI_GenBank
Match: XP_005854589.1 (nuclear distribution protein [Nannochloropsis gaditana CCMP526] >EKU21770.1 nuclear distribution protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 427.9 bits (1099), Expect = 6.600e-116
Identity = 246/544 (45.22%), Postives = 291/544 (53.49%), Query Frame = 0
Query:   57 RFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASHQQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXKIMARHGGRAHRLALMRQSSSLFLTCGEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSNLFVVGGASVYVHLYDTRMPEKEVGRFAPRHMRGVREG-GRGGGGSNAHVTGTAFNWNGREFLATYNDECVYRFTLGKDEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTHSGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRPTAEGGREGRRKGSLKAHGGEAAEDLVRRNERERVREGXXXXXXXMANFASRLMQAAL 600
            + ++DGRL GH GCVNTVAFS+ GDFCVTGSDDTYLM+WNVA+H+  ++ LSGH+ NIFCARFLP TNNTE+VS AADGQVRWNSL R  S                           K +ARH GRAHRLA+   +S  FLTCGEDG VL FD R+  KR LLT       V   E  V+PLYALSCSP D + FVVGG SVY+H YD R   + VGR+AP H+R  ++G  +     + H+TGTAFNWNGRE LATYNDECVY F + +D                                                                                                                                 +GYTQV+RGHRND TVKQVNF+G RSEYV+SGCD+GHIFMW+T SG L QLL+GDRRGAVNCLE+HP LP++ TSGLEHDVK+WRPT        RKG+LKAHGGE AE L  RNE+ER +         ++NF   +M  AL
Sbjct:    4 KLKVDGRLTGHRGCVNTVAFSEHGDFCVTGSDDTYLMLWNVAAHECRMKHLSGHQGNIFCARFLPHTNNTEVVSVAADGQVRWNSLARPSS----------LLHCPWIVLTLPLSGISKQLARHNGRAHRLAVTETTS--FLTCGEDGRVLGFDTRDAHKRHLLT-------VTTPEDDVIPLYALSCSPVDGHSFVVGGTSVYMHHYDARHVREPVGRYAPFHLRDDKDGASKARKLVSDHITGTAFNWNGREVLATYNDECVYLFRVDRDAARGGAEGGGEQVPWESSQDGLVSDHGEERAEHRRPSHMGPREAEEDGQEDASPRAGDSPALHPCSAAYSNPQKRMRQQTSTRQTMRGDVLEEKL----------------------------------RGYTQVFRGHRNDHTVKQVNFFGARSEYVVSGCDTGHIFMWETQSGELAQLLYGDRRGAVNCLETHPNLPVLATSGLEHDVKIWRPTR---GLSVRKGALKAHGGEMAEKLAERNEKERKKAA------RISNFTRFMMGRAL 485          
BLAST of NO10G00960 vs. NCBI_GenBank
Match: CBJ49245.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 245.4 bits (625), Expect = 6.100e-61
Identity = 231/528 (43.75%), Postives = 278/528 (52.65%), Query Frame = 0
Query:   52 PSTLERFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASHQQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXKIMARHGGRAHRLALMRQSSSLFLTCGEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSNLFVVGGASVYVHLYDTRMPEKEVGRFAPRHMRGVREGGRGGGGSNAHVTGTAFNWNGREFLATYNDEC-VYRFTLGKDEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTHSGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRP---TAEGGREGRRKGSLKAHGGEAAEDLVRRNERER 576
            P+TL R  L G LRGH GCVNTV+ S DG + ++GSDD  LM+W+  SH++     S H+ N+F ARFLP T+N +IVSCAADGQVR  +L R+ S                           +++  H GRAHRLA+   S   F+TCGEDG+VL+FD+R    R +   +    G R   G       ++ +P D N+  V G S Y+ ++D R  +    RF PR  R          GS AH+TG A NW G E +ATYN    VY F + K                                                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    Y   + GHRN  TVKQV FYG RSE+V+SG D GHIF W+  S  L  LLFGD+ GAVNCLE HP LP + TSGL   VKVWRP   T  G   G+R  S      E  E  + +N+RE+
Sbjct:  178 PNTLRRLELSGELRGHDGCVNTVSCSPDGKYWISGSDDLKLMIWDCESHKRKTSFHSRHQNNVFQARFLPYTDNEKIVSCAADGQVRLTNLSRSTS---------------------------ELLGEHEGRAHRLAIEPGSPHRFMTCGEDGVVLSFDLRAPLARNMGATLLRQPGGRSISG-------MALNPADPNVLFVCGDSPYLDMFDARKADVPAARFCPRSRR----------GSRAHITGVAVNWCGTEVVATYNPSGEVYLFDVKK------------------------------------------------HASRGTGSAPMWCPSIREGLLEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYAARFTGHRNLLTVKQVTFYGPRSEFVVSGSDCGHIFFWNKSSAKLEMLLFGDKVGAVNCLEPHPYLPALATSGLSKTVKVWRPPRITPVGELVGKRGKSPPEIPTENPE--MGQNQREQ 611          
BLAST of NO10G00960 vs. NCBI_GenBank
Match: ELW48301.1 (DDB1- and CUL4-associated factor 8 [Tupaia chinensis])

HSP 1 Score: 225.3 bits (573), Expect = 6.500e-55
Identity = 150/506 (29.64%), Postives = 207/506 (40.91%), Query Frame = 0
Query:   49 CTAPSTLERFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASHQQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXKIMARHGGRAHRLALMRQSSSLFLTCGEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSNLFVVGGASVYVHLYDTRMP-EKE----VGRFAPRHMRGVREGGRGGGGSNAHVTGTAFNWNGREFLATYNDECVYRFTLGKDEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTHSGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRPTAEGGRE 550
            C A   ++RF L   L GH+GCVNTV F+  G +  +  DD  ++VW+    Q  L   SGH  N+F A+FLP   ++ +  CA DGQVR   L   P                            K +A+HGG +H+LAL   S   FLT GED +V   D+R+ +  R + V++E+E         V LY +  +P D+  F VGG   +V +YD R   E E    + +F P H+ G          SN  +T   ++ +G E LA+YNDE +Y F    D+  +                                                                                                                               Y + Y+GHRN+ TVK VNFYG RSE+V+SG D GHIF+W+  S  + Q L GD+ G +NCLE HP LP+M TSGL+HDVK+W PTA+G  +
Sbjct:  175 CGAQVFVQRFGLQYDLEGHVGCVNTVHFNQRGTWLASSGDDLKVIVWDWTRQQALLTFESGHRNNVFQAKFLPNCGDSILAMCARDGQVRVAELSATP-----------------------HCKNTKHVAQHGGASHKLALDPSSPFTFLTSGEDAVVFTIDLRKEQPARKMLVVKEEE-------KKVGLYTICVNPADTYQFAVGGQDQFVRIYDQRKTGENENSGVLKKFCPHHLLGY--------DSNVSITCLVYSHDGTELLASYNDEDIYLFNSAHDDGAQ-------------------------------------------------------------------------------------------------------------------------------YVKRYKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIIQCLDGDKGGTINCLEPHPYLPMMATSGLDHDVKIWAPTAKGSTD 515          
BLAST of NO10G00960 vs. NCBI_GenBank
Match: XP_004613975.1 (PREDICTED: DDB1- and CUL4-associated factor 8 [Sorex araneus])

HSP 1 Score: 221.9 bits (564), Expect = 7.200e-54
Identity = 154/532 (28.95%), Postives = 221/532 (41.54%), Query Frame = 0
Query:   49 CTAPSTLERFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASHQQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXKIMARHGGRAHRLALMRQSSSLFLTCGEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSNLFVVGGASVYVHLYD-TRMPEKE----VGRFAPRHMRGVREGGRGGGGSNAHVTGTAFNWNGREFLATYNDECVYRFTLGKDEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTHSGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRPTAEGGREGRRKGSLKAHGGEAAEDLVRRNERER 576
            C A   ++RFRL   L GH GCVNT+ F+  G +  +GSDD  ++VW+    +  L   SGH++N+F A+FLP + ++ +  CA DGQVR   L                                K +A+H G +H+LAL   S   FL+ GED +V   D+R+ R    L V +E E         V LY +   P +++ F VGG   +V +YD  R+ EKE    + +F P H+            S A++T   ++ +G E LA+YNDE +Y F+    +  +                                                                                                                               YT+ Y+GHRN+ TVK VNFYG +SE+V+SG D GH+F+W+  S  + Q + GD+ G VNCLE HP LP++ TSGL+HDVK+W PTAE   E      LK        D+++RN+RER
Sbjct:  457 CGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLRVLVWDWVRRRPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAEL-----------------------SATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKE-------KKVGLYTIFVDPANTHQFAVGGRDQFVRIYDQRRIDEKENNGVLKKFCPHHL--------VNSESKANITCLVYSHDGTELLASYNDEDIYLFSSSHSDGAQ-------------------------------------------------------------------------------------------------------------------------------YTKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHVFLWEKESCQIVQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTE---LAGLK--------DVMKRNKRER 812          
BLAST of NO10G00960 vs. NCBI_GenBank
Match: XP_013862937.1 (PREDICTED: DDB1- and CUL4-associated factor 8 [Austrofundulus limnaeus])

HSP 1 Score: 219.9 bits (559), Expect = 2.700e-53
Identity = 163/572 (28.50%), Postives = 233/572 (40.73%), Query Frame = 0
Query:    9 GPLTPSPPSLHNRANPLTFDLLFGRQQSPNVTHQAMNRRVCTAPSTLERFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASHQQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXKIMARHGGRAHRLALMRQSSSLFLTCGEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSNLFVVGGASVYVHLYDTR-MPEKE----VGRFAPRHMRGVREGGRGGGGSNAHVTGTAFNWNGREFLATYNDECVYRFTLGKDEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTHSGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRPTAEGGREGRRKGSLKAHGGEAAEDLVRRNERER 576
            GP+  + PSL +R          GR      +HQ + RRVC +   ++R  L GRL  H GCVNT+ F+  G    +GSDD  +++W+ A  +  L   SGH++N+F A+FLP + ++ +  CA DGQ+R   L                                K +A+H G AH+LAL   S   FL+ GED +V   D+R  R    L V++E E         V LY +  +P  ++ F VGG   YV +YD R + E E    + +F P H+            S  ++T   ++ NG E LATYNDE +Y F     +  +                                                                                                                               Y + Y+GHRN+ TVK VNFYG  SE+V+SG D GHI++WD +S  + Q + GDR G VNCLE HP LP M TSGL+HD+K+W PTAE              G +  ++++++N+RER
Sbjct:  163 GPVWQAVPSLRSRE--------IGRN-----SHQFV-RRVCGSRGLVQRLELQGRLERHTGCVNTLHFNPSGTRLASGSDDLRVVIWDWAVRRAELEFDSGHKSNVFQAKFLPHSGDSTLAMCARDGQIRVAEL-----------------------SATQRCKNTKRVAQHKGAAHKLALDPDSPCSFLSAGEDAVVFGIDLRMDRPANKLVVVKEGE-------KKVGLYTIFVNPAKTHQFAVGGRDQYVRIYDQRKIDENENNGVLKKFCPSHL--------VSSESKTNITCLVYSHNGTELLATYNDEDIYLFDANHSDGAD-------------------------------------------------------------------------------------------------------------------------------YRRRYKGHRNNATVKGVNFYGPCSEFVVSGSDCGHIYLWDKNSARIVQFMEGDRGGVVNCLEPHPHLPGMATSGLDHDIKLWAPTAE-----------TPTGLKGLKEVMKKNKRER 544          
BLAST of NO10G00960 vs. NCBI_GenBank
Match: XP_003415231.1 (DDB1- and CUL4-associated factor 8 [Loxodonta africana] >XP_010593174.1 DDB1- and CUL4-associated factor 8 [Loxodonta africana] >XP_010593175.1 DDB1- and CUL4-associated factor 8 [Loxodonta africana] >XP_010593178.1 DDB1- and CUL4-associated factor 8 [Loxodonta africana] >XP_010593179.1 DDB1- and CUL4-associated factor 8 [Loxodonta africana] >XP_023409931.1 DDB1- and CUL4-associated factor 8 [Loxodonta africana] >XP_023409932.1 DDB1- and CUL4-associated factor 8 [Loxodonta africana] >XP_023409933.1 DDB1- and CUL4-associated factor 8 [Loxodonta africana])

HSP 1 Score: 219.2 bits (557), Expect = 4.700e-53
Identity = 152/532 (28.57%), Postives = 218/532 (40.98%), Query Frame = 0
Query:   49 CTAPSTLERFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASHQQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXKIMARHGGRAHRLALMRQSSSLFLTCGEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSNLFVVGGASVYVHLYDTR-MPEKE----VGRFAPRHMRGVREGGRGGGGSNAHVTGTAFNWNGREFLATYNDECVYRFTLGKDEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTHSGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRPTAEGGREGRRKGSLKAHGGEAAEDLVRRNERER 576
            C A   ++RFRL   L GH GCVNT+ F+  G +  +GSDD  ++VW+    Q  L   SGH++N+F A+FLP + ++ +  CA DGQVR   L                                K +A+H G +H+LAL   S   FL+ GED +V   D+R+ R    L V +E E         V LY +  +P +++ F VGG   YV +YD R + E E    + +F P H+            S A++T   ++ +G E LA+YNDE +Y F     +  +                                                                                                                               Y + Y+GHRN+ TVK VNFYG +SE+V+SG D GHIF+W+  S  + Q + GD+ G VNCLE HP LP++ TSGL+HDVK+W PTAE   E               +D++++N+RER
Sbjct:  173 CGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAEL-----------------------SATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKE-------KKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKIDENENNGVLKKFCPHHL--------VNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQ-------------------------------------------------------------------------------------------------------------------------------YVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTE-----------LTGLKDVIKKNKRER 528          
BLAST of NO10G00960 vs. NCBI_GenBank
Match: XP_019964868.1 (PREDICTED: DDB1- and CUL4-associated factor 8 isoform X2 [Paralichthys olivaceus])

HSP 1 Score: 218.8 bits (556), Expect = 6.100e-53
Identity = 165/572 (28.85%), Postives = 230/572 (40.21%), Query Frame = 0
Query:    9 GPLTPSPPSLHNRANPLTFDLLFGRQQSPNVTHQAMNRRVCTAPSTLERFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASHQQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXKIMARHGGRAHRLALMRQSSSLFLTCGEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSNLFVVGGASVYVHLYDTRMPEKE-----VGRFAPRHMRGVREGGRGGGGSNAHVTGTAFNWNGREFLATYNDECVYRFTLGKDEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTHSGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRPTAEG--GREGRRKGSLKAHGGEAAEDLVRRNER 574
            GP+  S PSL +R          GR      +HQ + RRVC A   ++R  L GRL  H GCVNT+ F+  G    +GSDD  +++WN A     L   SGH++N+F A+FLP + ++ +  CA DGQ+R   L                                K +A+H G AH+LAL   S   FL+ GED +V   D+R  R    L V++E +         V LY +  +P  +  F VGG   YV +YD R   +      + +F P H+            S  ++T   ++ +G E LA+YNDE +Y F     +  +                                                                                                                               Y + Y+GHRN+ TVK VNFYG  SE+V+SG D GHI++WD +S  + Q + GDR G VNCLE HP LP M TSGL+HD+K+W PTAE   G +G  K  +K +  E  ED VR  ++
Sbjct:  167 GPIWRSVPSLRSRE--------IGRD-----SHQFV-RRVCAARGLVQRLELQGRLEKHTGCVNTLHFNPSGTRLASGSDDLRVVIWNWAIRHAELEFDSGHKSNVFQAKFLPHSGDSTLAMCARDGQIRVAEL-----------------------SATQRCKNTKRVAQHKGAAHKLALEPDSPCSFLSAGEDAVVFGIDLRLDRPANKLAVVKEGD-------KKVGLYTIYVNPAKTQQFAVGGRDQYVRIYDQRKINENDNNGVLKKFCPSHL--------VSSESKTNITCLVYSHDGTELLASYNDEDIYLFDSNHSDGAD-------------------------------------------------------------------------------------------------------------------------------YRRRYKGHRNNATVKGVNFYGPCSEFVVSGSDCGHIYLWDKNSARIVQFMEGDRGGVVNCLEPHPHLPGMATSGLDHDIKLWAPTAESPTGLKG-LKEVMKKNKRERDEDSVRHGDQ 558          
BLAST of NO10G00960 vs. NCBI_GenBank
Match: XP_019964859.1 (PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Paralichthys olivaceus])

HSP 1 Score: 218.8 bits (556), Expect = 6.100e-53
Identity = 165/572 (28.85%), Postives = 230/572 (40.21%), Query Frame = 0
Query:    9 GPLTPSPPSLHNRANPLTFDLLFGRQQSPNVTHQAMNRRVCTAPSTLERFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASHQQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXKIMARHGGRAHRLALMRQSSSLFLTCGEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSNLFVVGGASVYVHLYDTRMPEKE-----VGRFAPRHMRGVREGGRGGGGSNAHVTGTAFNWNGREFLATYNDECVYRFTLGKDEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTHSGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRPTAEG--GREGRRKGSLKAHGGEAAEDLVRRNER 574
            GP+  S PSL +R          GR      +HQ + RRVC A   ++R  L GRL  H GCVNT+ F+  G    +GSDD  +++WN A     L   SGH++N+F A+FLP + ++ +  CA DGQ+R   L                                K +A+H G AH+LAL   S   FL+ GED +V   D+R  R    L V++E +         V LY +  +P  +  F VGG   YV +YD R   +      + +F P H+            S  ++T   ++ +G E LA+YNDE +Y F     +  +                                                                                                                               Y + Y+GHRN+ TVK VNFYG  SE+V+SG D GHI++WD +S  + Q + GDR G VNCLE HP LP M TSGL+HD+K+W PTAE   G +G  K  +K +  E  ED VR  ++
Sbjct:  168 GPIWRSVPSLRSRE--------IGRD-----SHQFV-RRVCAARGLVQRLELQGRLEKHTGCVNTLHFNPSGTRLASGSDDLRVVIWNWAIRHAELEFDSGHKSNVFQAKFLPHSGDSTLAMCARDGQIRVAEL-----------------------SATQRCKNTKRVAQHKGAAHKLALEPDSPCSFLSAGEDAVVFGIDLRLDRPANKLAVVKEGD-------KKVGLYTIYVNPAKTQQFAVGGRDQYVRIYDQRKINENDNNGVLKKFCPSHL--------VSSESKTNITCLVYSHDGTELLASYNDEDIYLFDSNHSDGAD-------------------------------------------------------------------------------------------------------------------------------YRRRYKGHRNNATVKGVNFYGPCSEFVVSGSDCGHIYLWDKNSARIVQFMEGDRGGVVNCLEPHPHLPGMATSGLDHDIKLWAPTAESPTGLKG-LKEVMKKNKRERDEDSVRHGDQ 559          
BLAST of NO10G00960 vs. NCBI_GenBank
Match: XP_019964875.1 (PREDICTED: DDB1- and CUL4-associated factor 8 isoform X3 [Paralichthys olivaceus])

HSP 1 Score: 218.8 bits (556), Expect = 6.100e-53
Identity = 165/572 (28.85%), Postives = 230/572 (40.21%), Query Frame = 0
Query:    9 GPLTPSPPSLHNRANPLTFDLLFGRQQSPNVTHQAMNRRVCTAPSTLERFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASHQQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXKIMARHGGRAHRLALMRQSSSLFLTCGEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSNLFVVGGASVYVHLYDTRMPEKE-----VGRFAPRHMRGVREGGRGGGGSNAHVTGTAFNWNGREFLATYNDECVYRFTLGKDEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTHSGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRPTAEG--GREGRRKGSLKAHGGEAAEDLVRRNER 574
            GP+  S PSL +R          GR      +HQ + RRVC A   ++R  L GRL  H GCVNT+ F+  G    +GSDD  +++WN A     L   SGH++N+F A+FLP + ++ +  CA DGQ+R   L                                K +A+H G AH+LAL   S   FL+ GED +V   D+R  R    L V++E +         V LY +  +P  +  F VGG   YV +YD R   +      + +F P H+            S  ++T   ++ +G E LA+YNDE +Y F     +  +                                                                                                                               Y + Y+GHRN+ TVK VNFYG  SE+V+SG D GHI++WD +S  + Q + GDR G VNCLE HP LP M TSGL+HD+K+W PTAE   G +G  K  +K +  E  ED VR  ++
Sbjct:  164 GPIWRSVPSLRSRE--------IGRD-----SHQFV-RRVCAARGLVQRLELQGRLEKHTGCVNTLHFNPSGTRLASGSDDLRVVIWNWAIRHAELEFDSGHKSNVFQAKFLPHSGDSTLAMCARDGQIRVAEL-----------------------SATQRCKNTKRVAQHKGAAHKLALEPDSPCSFLSAGEDAVVFGIDLRLDRPANKLAVVKEGD-------KKVGLYTIYVNPAKTQQFAVGGRDQYVRIYDQRKINENDNNGVLKKFCPSHL--------VSSESKTNITCLVYSHDGTELLASYNDEDIYLFDSNHSDGAD-------------------------------------------------------------------------------------------------------------------------------YRRRYKGHRNNATVKGVNFYGPCSEFVVSGSDCGHIYLWDKNSARIVQFMEGDRGGVVNCLEPHPHLPGMATSGLDHDIKLWAPTAESPTGLKG-LKEVMKKNKRERDEDSVRHGDQ 555          
The following BLAST results are available for this feature:
BLAST of NO10G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25335.11.300e-12445.66ddb1- and cul4-associated factor 8 [Nannochloropsi... [more]
XP_005854589.16.600e-11645.22nuclear distribution protein [Nannochloropsis gadi... [more]
CBJ49245.16.100e-6143.75conserved unknown protein [Ectocarpus siliculosus][more]
ELW48301.16.500e-5529.64DDB1- and CUL4-associated factor 8 [Tupaia chinens... [more]
XP_004613975.17.200e-5428.95PREDICTED: DDB1- and CUL4-associated factor 8 [Sor... [more]
XP_013862937.12.700e-5328.50PREDICTED: DDB1- and CUL4-associated factor 8 [Aus... [more]
XP_003415231.14.700e-5328.57DDB1- and CUL4-associated factor 8 [Loxodonta afri... [more]
XP_019964868.16.100e-5328.85PREDICTED: DDB1- and CUL4-associated factor 8 isof... [more]
XP_019964859.16.100e-5328.85PREDICTED: DDB1- and CUL4-associated factor 8 isof... [more]
XP_019964875.16.100e-5328.85PREDICTED: DDB1- and CUL4-associated factor 8 isof... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000965NSK000965Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00960.1NO10G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670305gene_4123Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100196g13gene5176Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00960.1NO10G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00960 ID=NO10G00960|Name=NO10G00960|organism=Nannochloropsis oceanica|type=gene|length=3553bp
AGCACATCAAGGATGCTGTGTGGTGCACTGAGGGACAATGCTTCATCTTC
CGCACATCAGCACCTGTACTTACACTAGAGCTAGATTGAGTACCGTGAGC
ACGGCGTGGGGGCCCGCTTGTGGTGCCATGGTAATATTTGTACACTTCGT
TTGCATGTGCCTCATTCACCAACAACATGACCACAGGCATGCATTACGCG
TTTCAAATGTGCAATGGATTCCGAAATACACCATTAGCAGCGCAAGTGGC
AGTCGGACAGGGCAAGCGCGGGCATGTCTCCAAATTCAGCAGGCGGACAC
TCTGGAAGCTGAGTTTCAACTGATTTTGATGCGAGACTTGTACACTGATG
CTGAGGTGGGACAGGAGCCGCAATTAAAATAGTGGCAAGGCATAACCCCC
ATTTTGAGCGCCACTTTACAAGTGGCCGGCCTGCTGGGGCTACTGAAGCT
GTGTGTGGCGCGTACTTAGCATGCCCTTTTGAAGAAAGGCTATGGGGCTT
TGGCACATAGCGTTATTTGCCTTCCATCCAATTAAGAATCCCACCGACAT
GACATCATCCTTCACCGCCCCACAACAAACAGGGACGCTAACCCGAGGAG
AATACGACGCGTTTTTTCAAGCACTCGGTGTGCATCAGGGTGTCTCATAC
AGGGAGCGCACTTGCTGTAGGCGTGCATCTCAAGATCGGGTAGCTACGGA
GCGCTGGTGAGCCACCATTCTACCGTCCATCGCGATGATCAAGGCTTCCC
CTTCCGAAGGACCCCTGACGCCTTCCCCTCCATCCCTGCACAACCGGGCC
AATCCCCTCACCTTCGACTTGCTATTCGGGCGGCAACAAAGTCCAAATGT
CACACACCAAGCCATGAACCGGCGCGTGTGTACTGCCCCAAGCACTCTCG
AGAGGTTCCGGTTGGACGGCCGTCTTCGGGGCCACCTTGGGTGTGTTAAT
ACTGTAGCCTTTTCCGACGACGGGGATTTCTGCGTGACAGGCTCAGATGA
TACCTACCTCATGGTGTGGAATGTAGCCTCGCATCAGCAATGCCTGCGAG
CCTTGAGTGGGCATGAGgtgcgggaggaggaagggagggagggaaaacga
gagggagggtgagaaaatacattcactttcattttcttggcttaaaatcc
cttctaaatcaaccctttcttcccttgaagGCCAACATCTTTTGTGCGCG
TTTCCTTCCTCAGACGAACAACACTGAAATCGTCTCTTGTGCAGCCGACG
GGCAAGTCCGATGGAATTCGCTCCTCCGCGCGCCCTCTACCACGGCTACC
ACAATTGGGAGCAGTAGCAGCACCAACAGCAGCAGCAGTAGTAACAGCAA
CAGTTCCTTCCACAGCAGCAAGATAATGGCCAGACATGGTGGACGAGCGC
ATAGACTGGCCTTAATGAGGCAGTCGTCTTCCTTGTTTTTAACCTGTGGT
GAGGACGGCCTTGTCCTAGCGTTTGATATGAGAGAGGGGAGGAAACGACG
GCTTTTGACTGTGATGGAAGAGGACGAGGGCGTGAGGGAGGACGAGGGGA
GTGTTGTGCCATTGTATGCCTTGAGCTGTAGTCCTGACGATAGCAATCTG
TTTGTGGTGGGTGGGGCTTCCGTCTATGTGCATTTGTACGATACCCGGAT
GCCGGAGAAGGAGGTGGGGAGATTCGCGCCCAGACATATGAGGGGAGTGA
GGGAGGGAGGGCGGGGTGGAGGGGGAAGCAATGCGCATGTGACGGGGACG
GCATTTAATTGGAATGGACGGGAGTTTCTGGCGACGTATAATGATGAGTG
TGTATATCGTTTTACGTTAGGGAAGGATGAGGTGGAGGAAGGAAGTGAGG
AAAGGGAGGAGGTAGGGGAGGAGGGACAGGAGGAGGAGGAGGAGGAGGAG
GACGATGATGATGATGATGAAGATGAGGAACGGAGGGCAGCCATGTATGC
GTCGAGGGTGGTGGGGGACCTCAGGGCATGTTACAAAAGGAGGGCGGGGA
TGAGGGAAGGTTGTGGGGGGGGAGGAAGAAGGGGAGGGAAGGAGGAGAAG
GAGGAGAAAGAAGGAGAGCAGAGACAGAGCCGACGACAACGACGACGTCG
CATGTCGACCACTGCTGCTCAAGACGACCAAGACGAGCACAGTTACGCCC
CCCCCTCTCCTCCTCCTGCTCCTGCTCCTCCTCCTCCTCCTCCTGCACCT
TCCCCCTCCCTCCCCAAAGGCTACACGCAAGTGTACCGCGGTCACCGCAA
CGATCGAACGGTAAAGCAAGTTAATTTTTATGGCCATCGAAGCGAGTACG
TCATTTCCGGGTGTGACTCAGGGCACATTTTCATGTGGGACACCCATTCA
GGGGCATTAACACAACTCCTCTTCGGGGACCGGCGGGGCGCCGTGAATTG
TCTGGAGAGCCACCCGACTCTTCCTTTAATGATGACCAGTGGGCTGGAAC
ATGATGTCAAGGTATGGAGGCCTACAGCAGAGGGGGGGAGGGAGGGTAGG
AGGAAGGGGTCGTTGAAGGCGCACGGGGGGGAGGCAGCGGAGGACCTGGT
GAGGAGGAATGAGAGGGAGAGGGTGAGAGAGGGAGGAGGGAGGGGAGGAG
GAGGGATGGCCAATTTCGCCAGTCGTTTAATGCAGGCAGCTCTACGGAGG
TCGGATGCGAGGGATGTGAGGGAGATGCTCCTGTTAGTGAGAGCATTGTC
GGAGAGAGGAGGAGGAGGAGGAGGGGGAGGGATGAATGATGAAGAGGAGG
AGGAGGAGGAAGTGGAAGAGGAGGAAGAAGGGGAGGAAGATGAGGAGGAA
GAAGACGAGGAAGAAGAAGAGGAAGAAGACGAGGAAGAAGAGGATGAGGG
TCAAAGGACGGCTGAATCATTGAATCGATTGATGATGCATCTAACAAATA
ATAATGCTGCAGTCGGCAGTGAAGAGGAGGAGCAGGGGGAGGAGGAGGAG
GAGGAGAAGGTGGACGGAGGGATTGAGGGGGAGAGGAGGGGAGGAGAAGA
GGAGAGTAGCGTGATGTGGTCATCGGATGGGGGGTCATCTTCGGAGGAGT
GGGACGGAGTCGACTCCAACGATGAAGAGGATAATGAGGGCGACTCCAGT
GGTGGTGAGGAGGAGGAGGAAGAACGGGAGGTTGAAGAGGATGAGGTAAA
GGATGACAATGAGCAGGAAGGAGTAGGGGAGGTGGAAGGGCAGGAGGAAC
GATAGGGAACAACGGAGTTATGGACGAGTGGATTAGATTGGTGGTGGTGC
GACAAAAAAGGAGAGGTGGTAAAAGCGTTGCAGGGCCCAGGAGTGAAATT
GCCAGGGTAAGTAAGAGGAGGAAGGATGGCTTAAGGATGCAATGTGGCTT
GAAAAGCATCACCTGAGCGCCATGTTTTAATCGATGTAAGTAGCTACAGC
AGAAAACAGTGTAGCGACGACAGGTGGATTAGAGTGCAGGGGGAAAGGGA
ATGAGGACAAGGAATTAGGAGTGGGGGAACCTACCTGCAGGCCTGAATGT
AAAGACTCTATGTAAAATAACATAAGAAAAGAAGACAATGGAAAATTAGA
TAA
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protein sequence of NO10G00960.1

>NO10G00960.1-protein ID=NO10G00960.1-protein|Name=NO10G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=786bp
MIKASPSEGPLTPSPPSLHNRANPLTFDLLFGRQQSPNVTHQAMNRRVCT
APSTLERFRLDGRLRGHLGCVNTVAFSDDGDFCVTGSDDTYLMVWNVASH
QQCLRALSGHEANIFCARFLPQTNNTEIVSCAADGQVRWNSLLRAPSTTA
TTIGSSSSTNSSSSSNSNSSFHSSKIMARHGGRAHRLALMRQSSSLFLTC
GEDGLVLAFDMREGRKRRLLTVMEEDEGVREDEGSVVPLYALSCSPDDSN
LFVVGGASVYVHLYDTRMPEKEVGRFAPRHMRGVREGGRGGGGSNAHVTG
TAFNWNGREFLATYNDECVYRFTLGKDEVEEGSEEREEVGEEGQEEEEEE
EDDDDDDEDEERRAAMYASRVVGDLRACYKRRAGMREGCGGGGRRGGKEE
KEEKEGEQRQSRRQRRRRMSTTAAQDDQDEHSYAPPSPPPAPAPPPPPPA
PSPSLPKGYTQVYRGHRNDRTVKQVNFYGHRSEYVISGCDSGHIFMWDTH
SGALTQLLFGDRRGAVNCLESHPTLPLMMTSGLEHDVKVWRPTAEGGREG
RRKGSLKAHGGEAAEDLVRRNERERVREGGGRGGGGMANFASRLMQAALR
RSDARDVREMLLLVRALSERGGGGGGGGMNDEEEEEEEVEEEEEGEEDEE
EEDEEEEEEEDEEEEDEGQRTAESLNRLMMHLTNNNAAVGSEEEEQGEEE
EEEKVDGGIEGERRGGEEESSVMWSSDGGSSSEEWDGVDSNDEEDNEGDS
SGGEEEEEEREVEEDEVKDDNEQEGVGEVEGQEER*
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Synonyms
Publications