NO10G00860, NO10G00860 (gene) Nannochloropsis oceanica

Overview
NameNO10G00860
Unique NameNO10G00860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length978
Alignment locationchr10:276503..277480 -

Link to JBrowse

Properties
Property NameValue
DescriptionTranslation initiation factor eif-2b subunit alpha
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:276503..277480 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0044237cellular metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR037171NagB/RpiA_transferase-like
IPR000649IF-2B-related
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Homology
BLAST of NO10G00860 vs. NCBI_GenBank
Match: EWM25308.1 (translation initiation factor eif-2b subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 456.8 bits (1174), Expect = 5.500e-125
Identity = 247/325 (76.00%), Postives = 266/325 (81.85%), Query Frame = 0
Query:    1 MSNSRAVTIMGIQNDLQEATKKLIDYERQMSRGRASISFRAGVELFFRYATRNNDDVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPLYVAAESYKFARLYPLTQADLEENIDNDLNRPLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGNVGFESGSVAGVAAMVTTQNPSCDYTPATYISLLFTDLGILTPAAVSDELIKLYQ 326
            MS+SRAVTIMGIQNDL+ AT +LI+YER++S GRASISFRA VELFFRYATR NDDVPDF  LN+LFI RG+ FVANALKSR  IAELGH+FVQDGM+IL HGRSEVVTGVL RAAQ+NKNFTVM+TEGRPEGSGFKAAERLTE GIPVTVILDSAA YFMERVDIVLLGAEGVVESGGIVNKIGTCQ+AMVAKLYNKPLYVAAESYKFARLYPLTQADLE+N+DND+ +PL P                                  G N  F+SG   GVAAM TT+NPSCDYTPA YISLLFTDLGILTPAAVSDELIKLYQ
Sbjct:   89 MSSSRAVTIMGIQNDLKAATSELIEYERRISGGRASISFRACVELFFRYATRKNDDVPDFETLNKLFIARGHHFVANALKSRLGIAELGHSFVQDGMMILTHGRSEVVTGVLIRAAQSNKNFTVMVTEGRPEGSGFKAAERLTEAGIPVTVILDSAAAYFMERVDIVLLGAEGVVESGGIVNKIGTCQLAMVAKLYNKPLYVAAESYKFARLYPLTQADLEDNVDNDVEKPLFPPLLTGIEGGTATGKVEEGEGRHRQERGSSGNL-LGKNTIFDSG--PGVAAM-TTKNPSCDYTPAQYISLLFTDLGILTPAAVSDELIKLYQ 409          
BLAST of NO10G00860 vs. NCBI_GenBank
Match: OQR89827.1 (translation initiation factor eIF-2B subunit alpha [Thraustotheca clavata])

HSP 1 Score: 261.9 bits (668), Expect = 2.600e-66
Identity = 155/323 (47.99%), Postives = 197/323 (60.99%), Query Frame = 0
Query:    6 AVTIMGIQNDLQEATKKL---IDYERQMSRGRASISFRAGVELFFRYATRNNDDVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPLYVAAESYKFARLYPLTQADLEENIDNDLNRPLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGNVGFESGSVAGVAAMVTTQNPSCDYTPATYISLLFTDLGILTPAAVSDELIKLYQ 326
            A T+M I+N LQEA  +L    D     S   +SIS  A  +LF RY TR   +  DF+      I RG  FVA +L SR+ IA+LGHNFV+DGM +L HG S VVTG+L +AA+  K+F+V++TEGRP  +G+K AE L++ GIP TVI+D+A GY+ME+VD+V++GAEGVVE+GGIVNKIGT   AM+A    KP YVAAES+KFARLYPL Q+D   N  ++                                           NV  E+         +T  +P+CDYTP  YISLLFTDLG+LTP+AVSDELIKLYQ
Sbjct:   37 ASTMMEIENALQEAAAQLKAAADTPVDKSITLSSISVTAVCQLFLRYVTRCFLEFADFDQCKAQLIDRGKMFVATSLTSRKRIADLGHNFVRDGMQVLTHGASRVVTGLLLQAAK-TKHFSVVVTEGRPNNAGYKTAEVLSKAGIPTTVIVDAAMGYYMEKVDMVIVGAEGVVENGGIVNKIGTFSCAMIAHAMKKPFYVAAESFKFARLYPLNQSDFPHNCTDE-------------------------------------------NVPSET------HPNMTVGSPTCDYTPPHYISLLFTDLGVLTPSAVSDELIKLYQ 309          
BLAST of NO10G00860 vs. NCBI_GenBank
Match: XP_008604149.1 (hypothetical protein SDRG_00450 [Saprolegnia diclina VS20] >EQC42726.1 hypothetical protein SDRG_00450 [Saprolegnia diclina VS20])

HSP 1 Score: 258.8 bits (660), Expect = 2.200e-65
Identity = 152/327 (46.48%), Postives = 198/327 (60.55%), Query Frame = 0
Query:    1 MSNSRAVTIMGIQNDLQEATKKL--IDYERQMSRGRASISFRAGVELFFRYATRNNDDVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPLYVAAESYKFARLYPLTQADLEENIDNDLNRPLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGNVGFESGSVAGVAAMVTTQNPSCDYTPATYISLLFTDLGILTPAAVSDELIKLYQ 326
            +  S A T+M I++ L EA  +L         ++  +SIS  A  +LF RY TR   +  DF+      I RG  F   +L SR+ IA+LGHNFV+DGM +L HG S VVTG+L +AA+  K+F+V++TEGRP G+G+K AE L++ GIP TVI+D+A GY+ME+VD+V++GAEGVVE+GGIVNKIGT   AM+A    KP YVAAESYKFARLYPL Q+D   +  +D++   +P                                                 A +T  +PSCDYTP  YISLLFTDLG+LTP+AVSDELIKLYQ
Sbjct:   32 VQRSSASTMMEIESALTEAAAQLKAAADGPAPTQALSSISVTAVCQLFLRYVTRCFLEFDDFDQCKSQLIDRGKLFAETSLLSRKRIADLGHNFVRDGMQVLTHGASRVVTGLLLQAAK-TKHFSVLVTEGRPNGAGYKTAEVLSKAGIPTTVIVDAAMGYYMEKVDMVIVGAEGVVENGGIVNKIGTFSAAMIAHAMKKPFYVAAESYKFARLYPLNQSDFPHSRKDDMSN--LPACACRPK--------------------------------------TTAQANLTVGSPSCDYTPPHYISLLFTDLGVLTPSAVSDELIKLYQ 317          
BLAST of NO10G00860 vs. NCBI_GenBank
Match: OQR91934.1 (translation initiation factor eIF-2B subunit alpha [Achlya hypogyna])

HSP 1 Score: 255.0 bits (650), Expect = 3.200e-64
Identity = 150/328 (45.73%), Postives = 191/328 (58.23%), Query Frame = 0
Query:    1 MSNSRAVTIMGIQNDLQEAT---KKLIDYERQMSRGRASISFRAGVELFFRYATRNNDDVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPLYVAAESYKFARLYPLTQADLEENIDNDLNRPLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGNVGFESGSVAGVAAMVTTQNPSCDYTPATYISLLFTDLGILTPAAVSDELIKLYQ 326
            +  S A T+M I++ L +A    K   D         +SIS  A  +LF RY TR   +  DF+      I RG  F   +L SR+ IA+LGHNFV+DGM +L HG S VVTG+L +AA+  K+F+V++TEGRP G+G+K AE L+  GIP TVI+D+A GY+ME+VD+V++GAEGVVE+GGIVNKIGT   AM+A    KP YVAAES+KFARLYPL Q+D   N  +D                                                  +       +T  +PSCDYTP  YISLLFTDLG+LTP+AVSDELIKLYQ
Sbjct:   32 VQRSSASTMMEIESALTDAAAALKAAADGPAASKVQLSSISVTAVCQLFLRYVTRCFLEFDDFDQCKSQLIDRGKLFAETSLLSRKRIADLGHNFVRDGMKVLTHGASRVVTGLLLQAAK-TKHFSVVVTEGRPNGAGYKTAELLSNAGIPTTVIVDAAMGYYMEKVDMVIVGAEGVVENGGIVNKIGTFSAAMIAHAMKKPFYVAAESFKFARLYPLNQSDFPHNRHDDTT----------------------------------------------LDAAVAKHPNLTVGSPSCDYTPPHYISLLFTDLGVLTPSAVSDELIKLYQ 312          
BLAST of NO10G00860 vs. NCBI_GenBank
Match: XP_009831638.1 (hypothetical protein H257_07709 [Aphanomyces astaci] >ETV78919.1 hypothetical protein H257_07709 [Aphanomyces astaci])

HSP 1 Score: 253.4 bits (646), Expect = 9.200e-64
Identity = 151/341 (44.28%), Postives = 197/341 (57.77%), Query Frame = 0
Query:    1 MSNSRAVTIMGIQNDLQEATKKL--------------IDYERQMSRGRASISFRAGVELFFRYATRNNDDVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPLYVAAESYKFARLYPLTQADL--EENIDNDLNRPLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGNVGFESGSVAGVAAMVTTQNPSCDYTPATYISLLFTDLGILTPAAVSDELIKLYQ 326
            + +S A T+M +++ LQ+A  +L              I      ++  +SIS  AG +LF RY TR   +  DF+      I RG  F   +  SR+ I + GHNFV+DGMV+L HG S VVT VL +AA+ +K+F+V++TEGRP G+G+K AE L+  GIP TVI+D+A GY+MERV +V++GAEGVVE+GGIVNKIGT   AM+A    KP YVAAESYKFARLYPL Q D       D  +   L P                                    +   +   V     ++T  +P+CDYTP  YISLLFTDLG+LTP+AVSDELIKLYQ
Sbjct:   35 IQHSEASTMMEMESALQDAASQLKAAAAANSPADNKNIATHSTSAQSLSSISVTAGCQLFLRYVTRCFLEFDDFDQCKSQLIDRGKLFAETSSTSRKRIVDFGHNFVRDGMVVLTHGASRVVTKVLLQAAK-SKHFSVVVTEGRPNGAGYKTAELLSNAGIPTTVIVDAAMGYYMERVSMVIVGAEGVVENGGIVNKIGTFSCAMIAHAMKKPFYVAAESYKFARLYPLNQHDFPHSRRTDESVVSMLAP------------------------------------SCTCDPELVLPSHPLLTAGSPACDYTPPQYISLLFTDLGVLTPSAVSDELIKLYQ 338          
BLAST of NO10G00860 vs. NCBI_GenBank
Match: XP_013898655.1 (Translation initiation factor eIF-2B subunit alpha [Monoraphidium neglectum] >KIY99635.1 Translation initiation factor eIF-2B subunit alpha [Monoraphidium neglectum])

HSP 1 Score: 252.7 bits (644), Expect = 1.600e-63
Identity = 148/326 (45.40%), Postives = 191/326 (58.59%), Query Frame = 0
Query:    1 MSNSRAVTIMGIQNDLQEATKKLIDYERQMSRGRASISFRAGVELFFRYATRNND-DVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPLYVAAESYKFARLYPLTQADLE-ENIDNDLNRPLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGNVGFESGSVAGVAAMVTTQNPSCDYTPATYISLLFTDLGILTPAAVSDELIKLY 325
            + NS A T+MG++ +L++A   L            SIS +AG ELF RY TR +  ++ DF A     I RGNRF   ++++R+ IAELG  F+++G  +L HGRS VV  +L RA     NF+V++TEGRP+G+G   A  L E+G+PVT++LDS   Y +ERVD+VL+G EGVVE+GG++NK+GT QIA+ AK  NKP YVAAESYKFARLYPL Q DL  E+   D+  PL+P                                                   V   NPS DYTP  YISLL TDLG+LTPAAVSDELI+LY
Sbjct:   54 IKNSGAQTMMGLEKELKDAAAAL------QRCNPTSISLKAGCELFLRYTTRTSALEMEDFAAAKARLIERGNRFADISIRARQAIAELGARFIRNGSTLLTHGRSRVVLALLQRAVSQGINFSVVVTEGRPDGTGQSMARALDELGVPVTMVLDSGVAYALERVDMVLVGGEGVVENGGVINKLGTYQIALCAKALNKPFYVAAESYKFARLYPLNQQDLPVEHKPVDVG-PLLP-------------------------------------------------RSVAVDNPSRDYTPPQYISLLVTDLGVLTPAAVSDELIQLY 323          
BLAST of NO10G00860 vs. NCBI_GenBank
Match: XP_008880135.1 (hypothetical protein H310_14120 [Aphanomyces invadans] >ETV91298.1 hypothetical protein H310_14120 [Aphanomyces invadans])

HSP 1 Score: 250.0 bits (637), Expect = 1.000e-62
Identity = 150/344 (43.60%), Postives = 199/344 (57.85%), Query Frame = 0
Query:    1 MSNSRAVTIMGIQNDLQEA-------------------TKKLIDYERQMSRGRASISFRAGVELFFRYATRNNDDVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPLYVAAESYKFARLYPLTQADLEENIDNDLNRPLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGNVGFESGSVAGVAAMVTTQNPSCDYTPATYISLLFTDLGILTPAAVSDELIKLYQ 326
            + +S+A T+M I++ LQ+A                    KK        ++  +SIS  AG +LF RY TR   +  DF+      I RG  F   +  SR+ I + GHNFV+DGMV+L HG S VVT +L +AA+ +K+F+V++TEGRP G+G+K AE L+  GIP TVI+D+A GY+MERV +V++GAEGVVE+GGIVNKIGT   AM+A    KP YVAAESYKFARLYPL Q+D   +   +    L+P                                    +   +   V     ++T  +P+CDYTP  YISLLFTDLG+LTP+AVSDELIKLYQ
Sbjct:   35 IQHSKASTMMEIESALQDAAAQLKAAAAANTPASATTDNKKNYVAHSTSAQSLSSISVTAGCQLFLRYVTRCFLEFDDFDLCKSQLIDRGKLFAETSSTSRKRIVDFGHNFVRDGMVVLTHGASRVVTKLLLQAAK-SKHFSVVVTEGRPNGAGYKTAELLSNAGIPTTVIVDAAMGYYMERVSMVVVGAEGVVENGGIVNKIGTFSCAMIAHAMKKPFYVAAESYKFARLYPLNQSDFPHSRTEE--SMLLP------------------------------------SCTCDPELVLPSHPLLTVGSPTCDYTPPQYISLLFTDLGVLTPSAVSDELIKLYQ 339          
BLAST of NO10G00860 vs. NCBI_GenBank
Match: OWY92697.1 (Translation initiation factor eIF-2B subunit alpha [Phytophthora megakarya])

HSP 1 Score: 248.1 bits (632), Expect = 3.900e-62
Identity = 147/334 (44.01%), Postives = 193/334 (57.78%), Query Frame = 0
Query:    1 MSNSRAVTIMGIQNDLQEATKKLIDYERQ---MSRGRASISFRAGVELFFRYATRNNDDVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPLYVAAESYKFARLYPLTQADLEENIDNDLNRPLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGNVGFESGSVAG------VAAMVTTQNPSCDYTPATYISLLFTDLGILTPAAVSDELIKLYQ 326
            ++ S A T+M ++ +LQEA ++L  ++ +    +R   SI+  AG +LF RY TR   +  DF+      I RG  F   +L SR  I+E+GHNF++DGM +L HG+S VV  +L  AA+  KNF+V +TEGR   SG   AE L +VGIP TVILDSA  Y+ME++DIV++GAEGVVE+GGIVN IGT   A++A+  NK  YVAAESYKFARLYPLTQ D+ +                                                 +   SG +AG          VT  +P  DYTP  YI+L+FTDLG+LTP+AVSDELIKLYQ
Sbjct:   34 ITRSEASTMMQMEGELQEAAQQLRAFQSEDDAATRFHNSIATTAGCQLFLRYVTRCFLEFDDFDLCRSQLIDRGKLFAETSLTSRNRISEVGHNFIRDGMKVLTHGKSRVVIALLCEAAK-TKNFSVFVTEGRSNSSGVGTAEELAKVGIPTTVILDSAVAYYMEQIDIVIVGAEGVVENGGIVNSIGTYSTAVIAQALNKQFYVAAESYKFARLYPLTQRDVPQK-----------------------------------------------QMAAISGDIAGGETTDETMKDVTFASPFFDYTPPGYIALMFTDLGVLTPSAVSDELIKLYQ 319          
BLAST of NO10G00860 vs. NCBI_GenBank
Match: POM67007.1 (Translation initiation factor eIF-2B subunit alpha [Phytophthora palmivora var. palmivora])

HSP 1 Score: 247.7 bits (631), Expect = 5.100e-62
Identity = 146/328 (44.51%), Postives = 194/328 (59.15%), Query Frame = 0
Query:    1 MSNSRAVTIMGIQNDLQEATKKLIDYERQ---MSRGRASISFRAGVELFFRYATRNNDDVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPLYVAAESYKFARLYPLTQADLEENIDNDLNRPLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGNVGFESGSVAGVAAMVTTQNPSCDYTPATYISLLFTDLGILTPAAVSDELIKLYQ 326
            ++ S A T+M ++ +LQEA ++L  ++ +    +R   SI+  AG +LF RY TR   +  DF+      I RG  F   +L SR  I+E+GHNF++DGM +L HG+S VV  +L  AA+  KNF+V +TEGR   SG   AE L +VGIP TVILDSA  Y+ME++DIV++GAEGVVE+GGIVN IGT   A++A+  NK  YVAAESYKFARLYPLTQ D+ +     ++                                       G + G E  +       VT  +P  DYTP  YI+L+FTDLG+LTP+AVSDELIKLYQ
Sbjct:   35 ITRSEASTMMQMEGELQEAAQQLRAFQAEDDAATRFHNSIATTAGCQLFLRYVTRCFLEFDDFDLCRSQLIDRGKLFAETSLSSRNRISEVGHNFIRDGMKVLTHGKSRVVIALLCEAAK-TKNFSVFVTEGRSNASGVSTAEELAKVGIPTTVILDSAVAYYMEQIDIVIVGAEGVVENGGIVNSIGTYSTAVIAQALNKQFYVAAESYKFARLYPLTQRDVPQKQMAAIS---------------------------------------GESAGGE--TTGETMKDVTFASPFFDYTPPGYIALMFTDLGVLTPSAVSDELIKLYQ 320          
BLAST of NO10G00860 vs. NCBI_GenBank
Match: XP_009522099.1 (putative initiation factor [Phytophthora sojae] >EGZ19382.1 putative initiation factor [Phytophthora sojae])

HSP 1 Score: 247.3 bits (630), Expect = 6.600e-62
Identity = 148/336 (44.05%), Postives = 192/336 (57.14%), Query Frame = 0
Query:    1 MSNSRAVTIMGIQNDLQEATKKL-----IDYERQMSRGRASISFRAGVELFFRYATRNNDDVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPLYVAAESYKFARLYPLTQADLEENIDNDLNRPLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGNVGFESGSVAG------VAAMVTTQNPSCDYTPATYISLLFTDLGILTPAAVSDELIKLYQ 326
            ++ S A T+M ++ +LQEA ++L      D   Q +R   SI+  AG +LF RY TR   +  DF+      I RG  F   +L SR+ I+++GHNF++DGM +L HG+S VV  +L  AA+  KNF+V +TEGR   SG   AE L +VGIP TVILDSA  Y+ME+VDIV++GAEGVVE+GGIVN IGT   A++A+   K  YVAAESYKFARLYPLTQ D+ +                                                 +   SG +AG          VT  +P  DYTP  YI+L+FTDLG+LTP+AVSDELIKLYQ
Sbjct:   35 ITRSGASTMMQMEGELQEAAQQLRAFQAADDNSQATRFHNSIATTAGCQLFLRYVTRTFLEFDDFDLCRSQLIDRGKLFAETSLSSRKRISDVGHNFIRDGMKVLTHGKSRVVIALLREAAK-TKNFSVFVTEGRSNASGVGTAEELAKVGIPTTVILDSAVAYYMEQVDIVVVGAEGVVENGGIVNSIGTYSTAVIAQALKKQFYVAAESYKFARLYPLTQRDVPQK-----------------------------------------------QMAAISGDIAGGESSDETMKNVTFASPFFDYTPPGYIALMFTDLGVLTPSAVSDELIKLYQ 322          
The following BLAST results are available for this feature:
BLAST of NO10G00860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25308.15.500e-12576.00translation initiation factor eif-2b subunit alpha... [more]
OQR89827.12.600e-6647.99translation initiation factor eIF-2B subunit alpha... [more]
XP_008604149.12.200e-6546.48hypothetical protein SDRG_00450 [Saprolegnia dicli... [more]
OQR91934.13.200e-6445.73translation initiation factor eIF-2B subunit alpha... [more]
XP_009831638.19.200e-6444.28hypothetical protein H257_07709 [Aphanomyces astac... [more]
XP_013898655.11.600e-6345.40Translation initiation factor eIF-2B subunit alpha... [more]
XP_008880135.11.000e-6243.60hypothetical protein H310_14120 [Aphanomyces invad... [more]
OWY92697.13.900e-6244.01Translation initiation factor eIF-2B subunit alpha... [more]
POM67007.15.100e-6244.51Translation initiation factor eIF-2B subunit alpha... [more]
XP_009522099.16.600e-6244.05putative initiation factor [Phytophthora sojae] >E... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR014ngnoR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00860.1NO10G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586663gene_4134Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100135g14gene5193Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00860.1NO10G00860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00860 ID=NO10G00860|Name=NO10G00860|organism=Nannochloropsis oceanica|type=gene|length=978bp
ATGAGCAATAGCCGTGCCGTCACCATCATGGGCATTCAGAACGACTTGCA
AGAAGCCACCAAGAAGTTGATAGACTACGAACGACAAATGAGTCGAGGCC
GGGCCTCCATCTCCTTTCGGGCGGGGGTCGAGCTGTTCTTCCGCTATGCC
ACGCGCAACAACGACGACGTCCCAGATTTTAATGCCCTTAATCAATTATT
CATCACGCGGGGGAATCGTTTTGTTGCGAATGCATTGAAAAGCCGCGAAG
TGATTGCTGAGCTTGGGCACAATTTCGTGCAAGATGGAATGGTGATCTTA
ATGCACGGCCGCTCTGAAGTGGTGACCGGCGTCCTGACCCGTGCCGCGCA
GAATAATAAAAATTTCACTGTGATGATCACGGAAGGTCGCCCGGAGGGTT
CTGGATTCAAGGCAGCGGAGCGATTGACTGAAGTTGGGATCCCCGTGACG
GTGATATTGGACTCGGCCGCTGGGTACTTTATGGAGAGGGTTGACATTGT
ATTGTTGGGCGCTGAGGGGGTGGTGGAGAGCGGGGGGATCGTGAATAAGA
TTGGGACATGCCAAATAGCCATGGTGGCCAAGTTGTACAATAAACCGTTG
TATGTCGCGGCGGAGAGCTATAAATTTGCCAGGCTTTATCCATTGACCCA
GGCGGATTTGGAGGAGAATATCGATAACGATTTAAACCGGCCGTTGGTTC
CCCCCATGCAGAGCGACAGTAGCGGCACTAGTAGCAGTAGTAGTAGCAGT
TGTAGCAGTAGCAACAGTAGTAGCGCCTTGCGTTCATCGGTAGTGGTAGG
AGATGGGGGTAATGTTGGGTTCGAGAGTGGGAGTGTGGCGGGGGTCGCGG
CAATGGTGACGACGCAGAATCCAAGCTGTGACTACACTCCGGCGACGTAC
ATCAGTCTGTTGTTTACGGATTTAGGTATCCTGACCCCTGCAGCCGTGTC
GGATGAACTGATCAAATTGTACCAATGA
back to top

protein sequence of NO10G00860.1

>NO10G00860.1-protein ID=NO10G00860.1-protein|Name=NO10G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MSNSRAVTIMGIQNDLQEATKKLIDYERQMSRGRASISFRAGVELFFRYA
TRNNDDVPDFNALNQLFITRGNRFVANALKSREVIAELGHNFVQDGMVIL
MHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTEVGIPVT
VILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAKLYNKPL
YVAAESYKFARLYPLTQADLEENIDNDLNRPLVPPMQSDSSGTSSSSSSS
CSSSNSSSALRSSVVVGDGGNVGFESGSVAGVAAMVTTQNPSCDYTPATY
ISLLFTDLGILTPAAVSDELIKLYQ*
back to top
Synonyms
Publications