NO10G00560, NO10G00560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G00560 vs. NCBI_GenBank
Match: OEU12666.1 (MFS general substrate transporter [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 81.3 bits (199), Expect = 3.700e-12 Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 0 Query: 1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLV 61 MD+VPKE+RGKW SLESV M +WSGSA +GG+LV+R G LFN TA LQL++T PL L+ Sbjct: 402 MDNVPKEERGKWASLESVNMFSWSGSAALGGILVERKGILFNFCFTAVLQLIATGPLLLL 461
BLAST of NO10G00560 vs. NCBI_GenBank
Match: CEP00650.1 (hypothetical protein PBRA_001704 [Plasmodiophora brassicae]) HSP 1 Score: 69.3 bits (168), Expect = 1.400e-8 Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0 Query: 1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPL 58 MD +PK+ RG WNSLESVT+ +W+GSA IGG++VD++G+ L TA+L +S LP+ Sbjct: 366 MDIIPKKSRGTWNSLESVTIFSWTGSAAIGGIVVDQWGYRTCFLATAALYAISCLPI 422
BLAST of NO10G00560 vs. NCBI_GenBank
Match: PNW70136.1 (hypothetical protein CHLRE_17g707250v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 69.3 bits (168), Expect = 1.400e-8 Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0 Query: 1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVP 66 MD VPKE R WNSLESVT WSGSA +GG L+ +YGF F ++TA +Q + L+L +VP Sbjct: 1206 MDFVPKESRAAWNSLESVTAFGWSGSAALGGWLIHKYGFQFTFIVTALMQSMGWAMSMLLLPIVP 1270
BLAST of NO10G00560 vs. NCBI_GenBank
Match: XP_002772738.1 (hypothetical protein Pmar_PMAR014955 [Perkinsus marinus ATCC 50983] >EER04554.1 hypothetical protein Pmar_PMAR014955 [Perkinsus marinus ATCC 50983]) HSP 1 Score: 67.4 bits (163), Expect = 5.500e-8 Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0 Query: 1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVPCE 68 MD VP RG+WN+LES++ TWSGSAVIGG L+D + + + ++TA + LV+ L +L LVP E Sbjct: 330 MDFVPSHQRGRWNALESLSSMTWSGSAVIGGYLMDNHDYRYTFVVTAYIYLVALLMRLPLLKLVPKE 396
BLAST of NO10G00560 vs. NCBI_GenBank
Match: XP_002785461.1 (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >EER17257.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983]) HSP 1 Score: 67.4 bits (163), Expect = 5.500e-8 Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0 Query: 1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVPCE 68 MD VP RG+WN+LES++ TWSGSAVIGG L+D + + + ++TA + LV+ L +L LVP E Sbjct: 359 MDFVPSHQRGRWNALESLSSMTWSGSAVIGGYLMDNHDYRYTFVVTAYIYLVALLMRLPLLKLVPKE 425
BLAST of NO10G00560 vs. NCBI_GenBank
Match: XP_009032938.1 (hypothetical protein AURANDRAFT_61023 [Aureococcus anophagefferens] >EGB11814.1 hypothetical protein AURANDRAFT_61023 [Aureococcus anophagefferens]) HSP 1 Score: 67.4 bits (163), Expect = 5.500e-8 Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 0 Query: 1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLV 65 MD VP DRGKWN+++ VT WSGSAV+GG LVDR G+ LITA +QL++ ++G+V Sbjct: 654 MDHVPYGDRGKWNAVDGVTRFGWSGSAVLGGYLVDRGGYALTFLITAGMQLLAAALWLALVGVV 717
BLAST of NO10G00560 vs. NCBI_GenBank
Match: GAX74844.1 (hypothetical protein CEUSTIGMA_g2290.t1 [Chlamydomonas eustigma]) HSP 1 Score: 67.0 bits (162), Expect = 7.100e-8 Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 0 Query: 1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVP 66 MD V KE+R KWNS E++T+ WSGSA +GG L+ YGF ITA++QL+S L+L +VP Sbjct: 608 MDYVSKENRAKWNSFEAITVFGWSGSAALGGWLIHEYGFQVTFHITATMQLISWCFTLLLLHMVP 672
BLAST of NO10G00560 vs. NCBI_GenBank
Match: PSC76787.1 (Major Facilitator Superfamily (MFS) [Micractinium conductrix]) HSP 1 Score: 67.0 bits (162), Expect = 7.100e-8 Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 0 Query: 1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVP 66 MD VP+ RGK N+++S+ +WSGSA GG L+ RYGF LITA ++L + LPLF +L VP Sbjct: 450 MDCVPRRHRGKVNAVDSIRTFSWSGSAAAGGWLISRYGFQTTFLITAGIKLGAFLPLFALLAYVP 514
BLAST of NO10G00560 vs. NCBI_GenBank
Match: XP_014155258.1 (hypothetical protein SARC_06316 [Sphaeroforma arctica JP610] >KNC81356.1 hypothetical protein SARC_06316 [Sphaeroforma arctica JP610]) HSP 1 Score: 65.9 bits (159), Expect = 1.600e-7 Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 0 Query: 1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVPCERN 70 MD P R KW +LES++ WSGSAV+GG+LVD YGF TA++QL++ PL L+L LV E + Sbjct: 366 MDYCPPNQRAKWGALESLSAFGWSGSAVLGGILVDSYGFDIAFHATATVQLIAWSPLLLLLPLVAREEH 434
BLAST of NO10G00560 vs. NCBI_GenBank
Match: XP_002184256.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44434.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 65.5 bits (158), Expect = 2.100e-7 Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 0 Query: 1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLG 63 MD+VP +RGKW++LESV M +WSGSA +GG+++ G L ++TA QL++TLPL + G Sbjct: 431 MDNVPPHERGKWSALESVNMFSWSGSAFVGGMVIGWGGILPLFIVTACGQLLATLPLVALFG 492 The following BLAST results are available for this feature:
BLAST of NO10G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 13
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G00560 ID=NO10G00560|Name=NO10G00560|organism=Nannochloropsis oceanica|type=gene|length=570bpback to top protein sequence of NO10G00560.1 >NO10G00560.1-protein ID=NO10G00560.1-protein|Name=NO10G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bpback to top Synonyms
Publications
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