NO10G00540, NO10G00540 (gene) Nannochloropsis oceanica

Overview
NameNO10G00540
Unique NameNO10G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1704
Alignment locationchr10:184195..185898 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:184195..185898 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019395Transmembrane_161A/B
Homology
The following BLAST results are available for this feature:
BLAST of NO10G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000912NSK000912Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00540.1NO10G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586784gene_4165Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00540.1NO10G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00540 ID=NO10G00540|Name=NO10G00540|organism=Nannochloropsis oceanica|type=gene|length=1704bp
ATGGAGCTCATTGGGTCGGTCTTAATGACCTACACCCTTGCCCGCTTCAA
TTCTATCGAGGATTTCAACCTCGCGCACCGCCTTTTAAACAAGCTGCGAT
TCTGGGTACCGCCCAGCGAGGAGGACGTGCAGCGCATAATGAAACCGGGA
AAGACCTCTTCCTCTTCCTCCACGTCCTCTAAGTCCACGACATTGAGCAG
CAAATTCGCACGCCGTTCCAACAAAGACAAGGACAAGGACAAAAATGGCT
GCGGTAGCGCGGGCAAAAAAGCGGGGGAGAAGCTGCACATGACGGCAGCA
GACCGCGTTGAGCAATTGGAATTGAAGCAGGCCTTGGTGCAACAGGGCAT
GTTGCTGCGCTACCGCGACTGGCCTCTACTTGATCGAATTATTATCTTCT
CCTGTTTAGCTGTTTTCATGACGGGCTGGCAAGAGTTGTATCGGTTCGCG
CACCCGAACGTGCGTCTGTTTAAGATTGGCAGTTTATTTACAGGCATTGC
CGCAGCCGTTGCTTTGGGCACGTTGGTGGACCTGGTGTGGAAGCGCAGAG
CATCTCGCACGGCGACGACGGGTGATTTTCACACGGCGGTGGCGTGGATG
ACGGGGATTGTGGCGGTGATCGCCTCATCGACCATGCTGTTGCTGCCAAA
AGATGGCGGGGGTCTGATGACAATGACGTTTCATTTAGACTCTGTCATAC
AGGCGCTGGGGACGCAATGCTATTCGTTCTGTGTGGATATTGTGGGGATA
AGTCCAACGTCTTCTTTTCTTATCGCTGCTGGAGAAGGGGACAAGCAATG
TCCCACCCAAGGATTGACGCGTCTGCTGCTCGTGGTGGTGGCAGCTGTCA
TTGCCATCGCGCACGTCCCTTCTGCCTTGACCGTATCCTTCGCATTCGTC
CATCAATACAAACTCCCTGGGCGGGCGCGTGGAAGCAGACTCGTGCGTAT
TGCCGTTTACTTGGAGCCTTTGCTCTGTCCTCTCTACTGTCTGACTTTCG
TGAAGCCCTTGGGTTTAGGCCTCCTGCAAGACAAGCTCGCCTCCTGTCCC
TCTGCCTCCCCCCCGCCCTCCTGGCTCCTCTCCCTGGGCACAGAGATCGG
TTGGCTGCACATGCAAGTGTGGATGCTCACGTTTCTAATGGTACTGCGGT
TGGTGCTGCTGAGATGGCAACTGCAGACCTACTTAGAGTATGGCTCCGTT
CTTGCCCTCTATCAAGAGCTGCACCGCGCGGGCCCCAAACCTGAAGATAT
TGACGCCCTCGGTGTCCGTCTTCTTTTCCAGCATCGTTTCCAAAAGCTTC
CTCTTATCTGTCTGGAACTCGTCGCTCCGCTCGTCTGGCTGGGGATCTGT
CTATTTTTGTTGGTGAGCAAGTGCTTTCTTCCTTCCTTCCTCGATGGGCT
TGCGGCCTCTGTGATGAATCAAGATGCGGCGGCTGCTTTTCGCTCTCCGA
CCTCCAAACCCTTAGGAGGGAGCATTGTCTCGATCCTGGACAAGCTCCGC
AGCGAGAAAGGGGAGGAAAAGTATATTGATTGGGCATTGGGGAGGGATAT
CATGCATGTTTTATGGGGCTTTGAATGGTGGAGCGCGAGTGAATGGGCGG
ACGCGGTAGGGTTCCTAGCTTGGTGGTCTGTGAGTGCGTGGACGGGTCTG
TACCTTGTGTGTATCGCCTGGAGGATGCTGAATCCGCAGATGGGGGATAG
GTAG
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protein sequence of NO10G00540.1

>NO10G00540.1-protein ID=NO10G00540.1-protein|Name=NO10G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MELIGSVLMTYTLARFNSIEDFNLAHRLLNKLRFWVPPSEEDVQRIMKPG
KTSSSSSTSSKSTTLSSKFARRSNKDKDKDKNGCGSAGKKAGEKLHMTAA
DRVEQLELKQALVQQGMLLRYRDWPLLDRIIIFSCLAVFMTGWQELYRFA
HPNVRLFKIGSLFTGIAAAVALGTLVDLVWKRRASRTATTGDFHTAVAWM
TGIVAVIASSTMLLLPKDGGGLMTMTFHLDSVIQALGTQCYSFCVDIVGI
SPTSSFLIAAGEGDKQCPTQGLTRLLLVVVAAVIAIAHVPSALTVSFAFV
HQYKLPGRARGSRLVRIAVYLEPLLCPLYCLTFVKPLGLGLLQDKLASCP
SASPPPSWLLSLGTEIGWLHMQVWMLTFLMVLRLVLLRWQLQTYLEYGSV
LALYQELHRAGPKPEDIDALGVRLLFQHRFQKLPLICLELVAPLVWLGIC
LFLLVSKCFLPSFLDGLAASVMNQDAAAAFRSPTSKPLGGSIVSILDKLR
SEKGEEKYIDWALGRDIMHVLWGFEWWSASEWADAVGFLAWWSVSAWTGL
YLVCIAWRMLNPQMGDR*
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Synonyms
Publications