NO10G00420, NO10G00420 (gene) Nannochloropsis oceanica

Overview
NameNO10G00420
Unique NameNO10G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1571
Alignment locationchr10:144233..145803 -

Link to JBrowse

Properties
Property NameValue
DescriptionMethyltransferase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:144233..145803 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
GO:0032259methylation
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR007213LCM_MeTrfase
Homology
[Close]
BLAST of NO10G00420 vs. NCBI_GenBank
Match: EWM25275.1 (methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 89.4 bits (220), Expect = 3.300e-14
Identity = 71/211 (33.65%), Postives = 90/211 (42.65%), Query Frame = 0 
Query:  171 RGRKGVIDQVLILGSGMDTRAWRLPLPDVTIIEVDVAAVLQAKEQVLRLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQVQMV---LSSTSRPLAIILEGLLMYLSEEEVIKVVREAGRLAAAKGSRIGFSLVDRQSVR 379
            RGR+  + QVLILGSGMDTRAWRLPLPDVT+IEVDV AV++AKE+VL+ +                                                                                                  S+ VQ V   L +  +PL I+LEGLLMYL E+ V +V+ +AGR+  A GS IG SLVDR+SV+
Sbjct:    7 RGRREKVTQVLILGSGMDTRAWRLPLPDVTVIEVDVPAVVRAKEEVLKRL----------------------------------------------QEKEGQLPPPSPSSSPPEISPPSSLTQLTVKARIVIPANFTATTPPSLPSSPSSWVQAVRAGLPAPEKPLVILLEGLLMYLPEDAVKEVLTQAGRMGEAPGSVIGISLVDRESVK 171
The following BLAST results are available for this feature:
BLAST of NO10G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25275.13.300e-1433.65methyltransferase [Nannochloropsis gaditana][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00420.1NO10G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_102327g1gene5233Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00420.1NO10G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00420 ID=NO10G00420|Name=NO10G00420|organism=Nannochloropsis oceanica|type=gene|length=1571bp
CCTTCCCTCGCTCCCTCCCCTCCAATCTCACTCCCCCAGATGGTGCCCGC
GGCGTCTTCCTCCTCCTTCTCCTACTACTACTACTTCTGCTCCTTCTCCT
CCTCTTCACACCGCCGCACTAGCCCTGTCCGACTCCCCTTCCTCATCCCA
CCCCTCCTCTTCCTCACCATCGCACACCACTCCACCTGCTCCGCCTTCGC
CTCCCCCTCCTCCACCACGACCCCCTCCTCTACTTCCTCGCTCTCCTCCT
CTTCCTCTTCCTCCTCCTCCTTCTTTACTCGCCTCTTCTCCCCCCCTCCT
CCTCCACTCTTCGCAGGCGTGGATCCTTCCTCCCCCATCCCCTTCTCCTC
TCGTCAAATGTCCGCTGCGAGAGCCATCGAAGCCGAGAGACCATCGACTG
ACCGTCTCTTCCACGACAATTTATCCCAGCATTTCGCGGGAAAAGAGGCC
ATGCAGCAAGCTCGGGAGAGGATGAGGGGAGGAGGGGGGGAGGGAGGGGA
GGGAGTCAAGGGgtggggaggaagatagctgtcagaacacgatatttcga
tgattttttacaggactgctgtcttacccaggggatatcggagaagggga
gcaggggtgatggaccagcgtggctgtcgttgcttttcagACCGTGGCGG
TGGGTGATGAGAGGGATAGGCGGAGGAAGAGGGAGGAAGGGAGTGATTGA
CCAAGTTCTCATTTTGGGGAGTGGGATGGATACGCGGGCGTGGCGACTGC
CTTTGCCCGACGTGACTATCATAGAGGTTGATGTTGCCGCGGTTCTTCAG
GCCAAAGAGCAGGTTCTACGCCTCGTGGAGAAAGAGGAAAAGCAGCAGCT
GCAGCTGCAGCAGCTGCAACAACAGCGGCAACAGCAGCAGCAACAGCAGC
AGCAGCAGAACGGGACCTCGCCCGCTTCCTCCATCATCCAACTCACCGTC
AAGAAGCGCCTCATCATCCCTGCTGACTTTTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCTTTCATCCCCACCACCACCACTACAACCACTCCCTCAACCTCT
TCCTCTCCCCCTCCCTCCTGGTCTGCGCAAGTCCAGATGGTGTTATCCTC
CACCTCCCGTCCCCTTGCCATCATCCTCGAAGGCCTGCTTATGTACCTGT
CTGAGGAGGAAGTGATAAAGGTTGTCAGGGAGGCAGGGCGATTGGCCGCA
GCCAAAGGGAGTCGTATCGGGTTTAGCTTGGTGGACAGACAAAGCGTGAG
AGACGCGCAGAAATCGAACTCGCCTTTGAGAAGAACGTGGCTGTGGGGTT
GCGATGAAGACGAAGCAGCCGAATTTTTTGCAAGGACACTGTCGTCCTCG
TCAGAGCAAGGAGGGAGGACGTGGAAAGTGACGCATGTGACGAGGGTGGG
GAAGAAGGGGGGTTATCCGAAAGGAGCCAATTATGGGTGTTGGAAAGATG
GAGGGAAAGGTGGGGGGAAAGGAAAGAGAAAGGGAAAAACATTGTATGTG
CTAGCGGAGCGGGTGAGGTGA
back to top

protein sequence of NO10G00420.1

>NO10G00420.1-protein ID=NO10G00420.1-protein|Name=NO10G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MVPAASSSSFSYYYYFCSFSSSSHRRTSPVRLPFLIPPLLFLTIAHHSTC
SAFASPSSTTTPSSTSSLSSSSSSSSSFFTRLFSPPPPPLFAGVDPSSPI
PFSSRQMSAARAIEAERPSTDRLFHDNLSQHFAGKEAMQQARERMRGGGG
EGGEGVKGPWRWVMRGIGGGRGRKGVIDQVLILGSGMDTRAWRLPLPDVT
IIEVDVAAVLQAKEQVLRLVEKEEKQQLQLQQLQQQRQQQQQQQQQQNGT
SPASSIIQLTVKKRLIIPADFSSSSSSSSSSSSSSSSSSSSSSSSSSFIP
TTTTTTTPSTSSSPPPSWSAQVQMVLSSTSRPLAIILEGLLMYLSEEEVI
KVVREAGRLAAAKGSRIGFSLVDRQSVRDAQKSNSPLRRTWLWGCDEDEA
AEFFARTLSSSSEQGGRTWKVTHVTRVGKKGGYPKGANYGCWKDGGKGGG
KGKRKGKTLYVLAERVR*
back to top
Synonyms
Publications