NO10G00290, NO10G00290 (gene) Nannochloropsis oceanica

Overview
NameNO10G00290
Unique NameNO10G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1870
Alignment locationchr10:100291..102160 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:100291..102160 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
Homology
The following BLAST results are available for this feature:
BLAST of NO10G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00290.1NO10G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00290.1NO10G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00290 ID=NO10G00290|Name=NO10G00290|organism=Nannochloropsis oceanica|type=gene|length=1870bp
ATGCCTCCTAGGGCCCGATATGGAGAGAGGGGGGAAGGAGAAGGAGGAGC
AGGAGAAGGAGGAGGGGGAGATGAGCGACTGGGGAGACAAGGAAAGACAG
GAGGTGGAGAGGGTAGTCATAAACCGAAGAGGAAGACATGGGACTTGGCG
TCGGAAGTGAGTGAGAAGATGAAGAGGTGTCGGATTACCATGTCCCCGGG
GGAGCTGCGTCTAAGGAAGgtgagagggagggagggagggagagaaggaa
ggttgagagtgcatgtgggaggtcatccatgagttcgaggcatcgttaga
gggagggaaggaggtagggaacaacctgaatcttgtaaaaccccgaaagc
gcttcaacaagaaggacgggctagagcccccccacccatccaccttgttc
ctgctgcccgtcagcaggaggagagcgcgagagcagcctttctttcttcc
acgaagaatgcggaggaggaggcctaggagctgagactgatggacacacg
ctgttcaattgaggtctcagttttcggagcgtcctacaactcctccctct
taccctccctccctcttaccctccctccctccctttacccatatacacaa
ctcaaactttgctcacagcctccctccctctctccctcctttcctcccca
gGATCTCGAGGACCTCAAAGAACTTGTCGAGCCGGACCGCGCCCGTCCTT
CCCCTTCATCCTCCTTCCCTTCCTCCCCCTCCTCCTTCCTCCCTTCCTCT
CTCCATCCCTTCTCGGGAGAAAGAGAGAGAATCCAGATAGTACGGACCAC
CGACCCTCTCACCCTCCACGTCTATTTCTTCTCCCCTTCTCCCCCCCCGC
CCTCCCTCGCTGCCGCCTTCCCCTCCTCCCTCTCGACCTCGCCCTCCCGC
CTCCTCCTCTCTGGCCGGCACCACAGCAGCGTCACTGCCCCCCTTCCTCC
CCTCCCTCCTCGCCTCCTTGACCTCGCTGCGGCTGCGGCTGCTCCTGCTG
CTTCTTCTTGCCCCGGTCCCTCCGCCTTCATCGTCAAAATTCCTCGCTTC
TATCCACATCACgtaaaaaaggaggggggagggttgcagggaggaagaga
ggaagggagggagggatacagaggttgaaaacacactcaactcctccccc
tccctccctccctccctccctccctccctcccttcctccctccttccctt
cctcctaaattttatagCCTCCACTCGTCAGCGTCCTCCCCTCCTCCTCC
CCCTTCGTCCCTCCCTCCTCCCCCCTCGTCCACCGTGACGGACAAGGGCA
GGTGCTGCACCCTCTGTTTGGGACGGGATGGAGCGGTGTATATTCCTTTA
AAGACGTGATAGAGGCCCTGCGGGACGTCAGGGAAGGCAGAGGCGCTCGT
CAGgtagaaaaagcccccctccccctcctcgtcctcctcccccttctcct
cctcatcctgttcctcctcctcttcacctgttgctccgtcgattttccac
tttccttctatcgttccaataagagcaggcagcccacttactaaacccct
cctttcttccctccctccctccctccctccctcccttcctcctctgtcag
GTTCCCTTATCGTCCTCCGTAACTCCTCCTTCCCCTTCCTCCTCTCCTTC
CTCCTCTCCTTCCTCCTCCCCTTCCCCCTCTCCTTCCTGCGTCCAGATGA
TGACGAACCACTCGCCCTGCAGCAGCAGGGGCTGGGAGGAAGGGAGGGAG
GGAGGGGTGGCGGGAGGGAGAAGGAGGAATGTGGGGGTGGACGCGGCAAA
TGGATTGTTGGTTTGGAATGAGGAGGAGGACAGAGACGAGGAAAAGGGAG
ACGGAATGAATGTGTGTTAG
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protein sequence of NO10G00290.1

>NO10G00290.1-protein ID=NO10G00290.1-protein|Name=NO10G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MPPRARYGERGEGEGGAGEGGGGDERLGRQGKTGGGEGSHKPKRKTWDLA
SEVSEKMKRCRITMSPGELRLRKDLEDLKELVEPDRARPSPSSSFPSSPS
SFLPSSLHPFSGERERIQIVRTTDPLTLHVYFFSPSPPPPSLAAAFPSSL
STSPSRLLLSGRHHSSVTAPLPPLPPRLLDLAAAAAAPAASSCPGPSAFI
VKIPRFYPHHPPLVSVLPSSSPFVPPSSPLVHRDGQGQVLHPLFGTGWSG
VYSFKDVIEALRDVREGRGARQVPLSSSVTPPSPSSSPSSSPSSSPSPSP
SCVQMMTNHSPCSSRGWEEGREGGVAGGRRRNVGVDAANGLLVWNEEEDR
DEEKGDGMNVC*
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Synonyms
Publications