NO10G00230, NO10G00230 (gene) Nannochloropsis oceanica

Overview
NameNO10G00230
Unique NameNO10G00230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2645
Alignment locationchr10:79742..82386 -

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, RING/FYVE/PHD-type
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:79742..82386 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0019789SUMO transferase activity
GO:0008270zinc ion binding
GO:0019789SUMO transferase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0000724double-strand break repair via homologous recombination
GO:0016925protein sumoylation
GO:0000724double-strand break repair via homologous recombination
Vocabulary: Cellular Component
TermDefinition
GO:0030915Smc5-Smc6 complex
GO:0030915Smc5-Smc6 complex
Vocabulary: INTERPRO
TermDefinition
IPR026846Nse2(Mms21)
IPR004181Znf_MIZ
Homology
BLAST of NO10G00230 vs. NCBI_GenBank
Match: XP_014149719.1 (hypothetical protein SARC_11666, partial [Sphaeroforma arctica JP610] >KNC75817.1 hypothetical protein SARC_11666, partial [Sphaeroforma arctica JP610])

HSP 1 Score: 83.2 bits (204), Expect = 1.400e-12
Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 0
Query:  124 NNLTHLAQTHLQEAYVAERARQADTLEQHGMWKEIMKFLEPEQDEDLEIVARQGPDPFQFKCPITQSTYVEPMRNTVCGHSFSHAGIMQSLNKKTEIKCPVPGCNKPVKRSTLEKD 240
            NN+T     H  +++   +   A   EQ      +    E E DED+ +    GP    FKC ITQ    +PM+N+VCGH +S AGIMQ + +   IKCP+ GC K V+R+TL+ D
Sbjct:   55 NNITDTVTDHKVDSHEWTQESLAFLKEQFPHKYNVDVNSELESDEDIVV----GPATQDFKCKITQMLMKDPMKNSVCGHRYSKAGIMQMIGEHPSIKCPIGGCGKTVRRNTLQHD 166          
BLAST of NO10G00230 vs. NCBI_GenBank
Match: EWM25252.1 (Zinc finger, RING/FYVE/PHD-type [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 1.800e-12
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 0
Query:  196 MRNTVCGHSFSHAGIMQSLNKKTEIKCPVPGCNKPVKRSTLEKDKXXXXXXXRHARQTQGGGGTSTQRYPVAEEVD 272
            MRN  CGH++S AGIMQSL KK E+KCPVPGCNK V+ ++LE+D+       R  RQTQ G   ++QR   AEEV+
Sbjct:    1 MRNEPCGHTYSKAGIMQSLRKKHEVKCPVPGCNKAVRAASLERDREKEVLVLRFERQTQ-GVFMASQRDAGAEEVE 75          
BLAST of NO10G00230 vs. NCBI_GenBank
Match: XP_005854387.1 (hypothetical protein NGA_0173500 [Nannochloropsis gaditana CCMP526] >EKU21973.1 hypothetical protein NGA_0173500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 71.6 bits (174), Expect = 4.200e-9
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 MEAAVDMAMAAIVHEARKLRQGGPAQEGLDILENDINDAFRNIKIALKEELNFPTIKNDAAFYEAQTNRLK 72
            MEAAVD AM AI  EA+KLR  G  Q+GLD++ENDIN  FR +K+A+  +LN   IK + AFY AQ  R+K
Sbjct:    1 MEAAVDSAMVAIQQEAKKLRSDG--QQGLDVVENDINAVFRFLKLAVTNDLN--AIKTEQAFYRAQIERVK 67          
BLAST of NO10G00230 vs. NCBI_GenBank
Match: OBZ91919.1 (E3 SUMO-protein ligase MMS21 [Choanephora cucurbitarum])

HSP 1 Score: 71.6 bits (174), Expect = 4.200e-9
Identity = 34/111 (30.63%), Postives = 61/111 (54.95%), Query Frame = 0
Query:  156 KEIMKFLEPEQDEDLEIVARQGPDPFQFKCPITQSTYVEPMRNTVCGHSFSHAGIMQSLNKKTEIKCPVPGCNKPVKRSTLEKDKXXXXXXXRHARQTQGGGGTSTQRYPV 267
            +E+   +E  +++D+ +    GP     KCP+T   + +PM + +C H+FS + I      +  I CP+PGCN+PV+R++L+ D        R A++ +  G  +TQ + V
Sbjct:  146 EEMPSLVETTEEDDIVM----GPSKISLKCPLTTIWFEDPMTSIICKHTFSKSAIFSLFKHQNAIPCPIPGCNRPVQRASLKPDDLMAERVKR-AKEREKEGQKATQFFDV 251          
BLAST of NO10G00230 vs. NCBI_GenBank
Match: XP_009023089.1 (hypothetical protein HELRODRAFT_162723 [Helobdella robusta] >ESN99211.1 hypothetical protein HELRODRAFT_162723 [Helobdella robusta])

HSP 1 Score: 68.2 bits (165), Expect = 4.600e-8
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0
Query:  182 QFKCPITQSTYVEPMRNTVCGHSFSHAGIMQSLN-KKTEIKCPVPGCN--KPVKRSTLEKD 240
            Q KCPITQST +EP+RN +CGHS+   G +Q +N +  + +CPVPGC   +P+    LE+D
Sbjct:  304 QTKCPITQSTMIEPVRNKLCGHSYDRKGALQLINMRANKARCPVPGCANVEPLNEDQLEED 364          
BLAST of NO10G00230 vs. NCBI_GenBank
Match: KYQ91755.1 (hypothetical protein DLAC_07543 [Tieghemostelium lacteum])

HSP 1 Score: 67.8 bits (164), Expect = 6.000e-8
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 0
Query:  165 EQDEDLEIVARQGPDPFQFKCPITQSTYVEPMRNTVCGHSFSHAGIMQSLNKKTEIKCPVPGCNKPVKRSTLEK 239
            ++D+DL + ++        KCPI+Q  +VEP++N  CGH +S A I   L  K ++ CPV GCNK +   + E+
Sbjct:  147 DEDDDLSLASQS----VNIKCPISQQIFVEPVKNRECGHLYSKASIESYLKNKNQVACPVAGCNKKITHGSYER 216          
BLAST of NO10G00230 vs. NCBI_GenBank
Match: OAO14375.1 (hypothetical protein AV274_3965 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 67.0 bits (162), Expect = 1.000e-7
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 0
Query:  156 KEIMKFLEPEQDEDLEIVARQGPDPFQFKCPITQSTYVEPMRNTVCGHSFSHAGIMQSLNKKTEIKCPVPGCNKPVKRSTLEKDK 241
            K  M       D+D+EI   +     +  CPI++  +V P+RN  C H++S   I+  +  KT +KCPV GCNK V  ++LE D+
Sbjct:   98 KRSMTARNRNNDDDIEIDGVEMDTKSRLLCPISRERFVHPVRNKGCKHTYSRDAIVNLIGHKTSVKCPVKGCNKNVSLNSLEDDE 182          
BLAST of NO10G00230 vs. NCBI_GenBank
Match: PRP85329.1 (hypothetical protein PROFUN_06931 [Planoprotostelium fungivorum])

HSP 1 Score: 67.0 bits (162), Expect = 1.000e-7
Identity = 40/119 (33.61%), Postives = 63/119 (52.94%), Query Frame = 0
Query:  131 QTHLQEAYVAERARQADTLE-----QHGMWK-EIMKFLEPEQDEDLEIVARQGPDPFQFKCPITQSTYVEPMRNTVCGHSFSHAGI---MQSLNKKTEIKCPVPGCNKPVKRSTLEKDK 241
            + HL +    + A++A++       Q  +WK +      P +D+DL I      D     CPIT+   V+PMRN  CGH +  + I   ++S+ K  +I CPV GC+K V +++LE DK
Sbjct:   93 EDHLNKLNKKDAAKEAESHPKLIDYQKKIWKAQYPNKPFPGEDDDLIIT----NDEIDINCPITKKQLVKPMRNMACGHHYEQSAIEEYLKSMRKHRQIDCPVAGCSKTVSKTSLEYDK 207          
BLAST of NO10G00230 vs. NCBI_GenBank
Match: XP_009033730.1 (hypothetical protein AURANDRAFT_61757 [Aureococcus anophagefferens] >EGB11353.1 hypothetical protein AURANDRAFT_61757 [Aureococcus anophagefferens])

HSP 1 Score: 65.9 bits (159), Expect = 2.300e-7
Identity = 34/102 (33.33%), Postives = 53/102 (51.96%), Query Frame = 0
Query:  146 ADTLEQHGMWKEIMKFLEP-------EQDEDLEIVARQGPDPFQFKCPITQSTYVEPMRNTVCGHSFSHAGIMQSLNKKTEIKCPVPGCNKPVKRSTLEKDK 241
            A  +E  G +K++ K   P       + DE++++   Q      FKCPIT   +V+PM +  CGH+FS    M   +K    KC V GC + + ++ L+KDK
Sbjct:  119 APDVELDGQFKKMRKVCAPVLGGGDDDSDEEIQVDETQADQEADFKCPITTGLFVDPMISKTCGHTFSKKAAMSYFHKTIPKKCAVFGCAQLLTQADLKKDK 220          
BLAST of NO10G00230 vs. NCBI_GenBank
Match: OAQ29144.1 (hypothetical protein K457DRAFT_32550 [Mortierella elongata AG-77])

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-7
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 0
Query:  163 EPEQDEDLEI-VARQGPDPFQFKCPITQSTYVEPMRNTVCGHSFSHAGIMQSLNKKTEIKCPVPGCNKPVKRSTLEKDK 241
            E E DED+EI V R G +    KCP+T     +P+ + VC HSFS A I   +  +    CPV GCN+P+    L+ +K
Sbjct:  253 EDEDDEDMEIMVTRDGNNLQSLKCPLTTQFLEDPVTSAVCKHSFSSAAIHALIRSRPRSVCPVHGCNRPIALENLQPNK 331          
The following BLAST results are available for this feature:
BLAST of NO10G00230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
XP_014149719.11.400e-1238.79hypothetical protein SARC_11666, partial [Sphaerof... [more]
EWM25252.11.800e-1255.26Zinc finger, RING/FYVE/PHD-type [Nannochloropsis g... [more]
XP_005854387.14.200e-956.34hypothetical protein NGA_0173500 [Nannochloropsis ... [more]
OBZ91919.14.200e-930.63E3 SUMO-protein ligase MMS21 [Choanephora cucurbit... [more]
XP_009023089.14.600e-849.18hypothetical protein HELRODRAFT_162723 [Helobdella... [more]
KYQ91755.16.000e-837.84hypothetical protein DLAC_07543 [Tieghemostelium l... [more]
OAO14375.11.000e-736.47hypothetical protein AV274_3965 [Blastocystis sp. ... [more]
PRP85329.11.000e-733.61hypothetical protein PROFUN_06931 [Planoprotosteli... [more]
XP_009033730.12.300e-733.33hypothetical protein AURANDRAFT_61757 [Aureococcus... [more]
OAQ29144.13.000e-740.51hypothetical protein K457DRAFT_32550 [Mortierella ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00230.1NO10G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665815gene_4198Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102006g2gene5254Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00230.1NO10G00230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00230 ID=NO10G00230|Name=NO10G00230|organism=Nannochloropsis oceanica|type=gene|length=2645bp
AGGATGAGGTGGGTGGAGTGCTGTGGGTGGGTAAGAGTGTTGGGGGGCGT
GCGTGAGGACGAGGGAGAGAAGGCAGGAGGGCACAAGCAACCGCAGAAAA
TGCTCGATTGGAAGCAAAGGACTCGCTCACTTGTCTTGAGCGAGTCTTGG
GCTTGGCCGAGGCGGGACGTTGCTCGCGTTGCAAACAGCAATCAAAGGTC
GTCACGCTGCTCAAGGGCGTGTGTTGGTGTGTGTGAAGGGTTTCGACAGG
CACACTGGGCATGCATTTGGGTGGGGCAGGCGTCAAATGGATGCGAAGAA
GATGAGGAAGAGGATGGGGGGTGGGAGGGAAGAGGGCGGGAAGAACATGG
GAAGGAAAGGAAGGGGGACAGCTGCATCATTCTTCGCTCACTGCATTGGA
CAGCGAGGGTAAAGGCAATGTGATAATGTGTTGAGGCGACAGTGAGCCAT
TCACGAGGCATATCTACCATGTAAGCAACATACGAAGCGACCTTCCCTTT
CCCTGTTCCCCCCCTCCATTTTTTCCCAACATAGCTCCTCCCTTGCCTGT
CTCGCCTTCCTTGCCCATGGAGGCCGCTGTCGACATGGCCATGGCGGCTA
TCGTCCACGAGGCCAGGAAGCTACGTCAAGGAGGACCCGCGCAGGAGGGT
TTGGACATCCTGGAGAACGATATTAATgtaagagcatggaggagactggg
aaggggaagagaaggggatgggaggacaaggcgaggaacatatcttctgc
aagcgtgggatacgcctttttgtagggatgatgaagatgccgacgtcgct
tcatctctttgatatacgataaagggcgaactgtatgtgcgagtgcgggg
tagctggaagggagggagggagggacgtgtcctggggagccctacgattg
acgctcgtgcaagacgaggggcagggtttatgtttagtcgagaggataga
gagaggtaactttgtgcttagccatatgcttctggtacgcttatctatcc
tctccttgcccccctttcctccatccctccctttcctcttcccctagGAC
GCTTTCCGCAACATTAAGATCGCCCTAAAAGAGGAGCTAAACTTCCCGAC
CATCAAGAATGATGCGGCTTTCTATGAGGCGCAGACAAATCGGCTTAAGg
cacgtttgggtgtacggtagaatggagggagggacgaaaggaataatgga
ggcttaaccatcgttggaaccactcatccttcctcccctccctctccccc
tctctcccttcttcccttccttccttccttcccctatgcacagGACAATA
TCAAGGCCTTGACCGAAGCCGACATAATGCGTTCCACATGGGTCCGTGTC
ATGGAGGCTCTCGAACGACCGCACGgtgtgtttctcttctccctccctct
cttcctcctccccttcctcccttcctttcttcctttccccttctttttgc
ctagccaggcctctcgtcccgcaccctaaaatttcctccttctcaattta
atttaaactgcccaatccccacccacccactccctccctccctccctccc
tccctccctctcttcctccctcagACCCCATGACACAAGCTCTCCGCGCC
TCCATCACCACTGCCGTCTGCTCCGATCCTGCTGTGGCGTATGACCCGAA
CAATCTCACACACCTGGCGCAGACGCACCTGCAAGAGGCTTACgtaagga
gagagggagggaggggaggacggagggagggagcagggtgttcggaataa
gatgtcgttggcttttccataacaggtattcatctttgcccggccctccc
tcccgccctccctccagGTCGCGGAGAGGGCAAGGCAGGCAGACACGTTG
GAGCAGCACGGCATGTGGAAGGAAATCATGAAGTTTCTAGAACCCGAGCA
AGACGAGgtatgtctccctccctccctccttccctccctcctctcccttc
tatcccctgagggccaaggactaaatgtgttcttcagggccagcgaaaca
ggaagacgtgacagcaaacacatcccctccctccctccctccctccctcc
ctccctccctcccccccttccccagGATCTGGAGATCGTCGCGCGCCAAG
GCCCGGACCCCTTCCAATTTAAGTGCCCCATCACCCAATCCACCTACGTC
GAGCCCATGCGCAACACCGTCTGTGGCCACTCCTTCAGCCACGCAGGCAT
CATGCAGAGCCTCAACAAGAAGACCGAGgtacgtcaccctcctctccctc
acctaaccctgccccaggagcagctctcgcggctgatgcaggcagatcgg
ttgtcagatccctcacccacccaccctccctccctccctccctctcttca
cttccaatgcagATCAAATGTCCGGTGCCGGGCTGCAACAAGCCCGTCAA
GCGGAGCACGTTGGAGAAGGACAAAGAGAAGCAACTGCAGCTTGATCGAC
ACGCGCGGCAGACGCAGGGAGGGGGCGGGACCAGCACACAAAGATACCCG
GTGGCGGAAGAGGTCGATTTTTGAGGGAGGGAGGGAGGAAGGGGGGGAGT
TGAACAGCTGAAAATACAGGGAAGGAGAAGAGGAAGAAAAAATAAAGAAG
ACGAAAAAGAGCAAGAAGAAGAGGAAGGAGGCATGGCACATGAGC
back to top

protein sequence of NO10G00230.1

>NO10G00230.1-protein ID=NO10G00230.1-protein|Name=NO10G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MEAAVDMAMAAIVHEARKLRQGGPAQEGLDILENDINDAFRNIKIALKEE
LNFPTIKNDAAFYEAQTNRLKDNIKALTEADIMRSTWVRVMEALERPHDP
MTQALRASITTAVCSDPAVAYDPNNLTHLAQTHLQEAYVAERARQADTLE
QHGMWKEIMKFLEPEQDEDLEIVARQGPDPFQFKCPITQSTYVEPMRNTV
CGHSFSHAGIMQSLNKKTEIKCPVPGCNKPVKRSTLEKDKEKQLQLDRHA
RQTQGGGGTSTQRYPVAEEVDF*
back to top
Synonyms
Publications